Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99860 * 2 1 4 4 N 1.46899 * 109.47206 * 124.13319 * 3 2 1 5 5 C 1.46897 * 110.99935 * 64.84169 * 4 3 2 6 6 C 1.50705 * 109.46871 * 66.04942 * 5 4 3 7 7 H 1.08001 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99798 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00314 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99805 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.46900 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47055 * 239.99798 * 10 8 6 13 13 H 1.48506 * 109.46927 * 119.99901 * 10 8 6 14 14 C 1.46899 * 110.99838 * 300.89282 * 4 3 2 15 15 H 1.09003 * 115.55467 * 79.35767 * 14 4 3 16 16 C 1.52998 * 117.49949 * 225.03036 * 14 4 3 17 17 C 1.52997 * 117.49950 * 293.68770 * 14 4 3 18 18 H 1.09000 * 117.49763 * 0.02562 * 17 14 4 19 19 C 1.53001 * 117.50098 * 145.02388 * 17 14 4 20 20 O 1.42908 * 109.47064 * 185.00150 * 19 17 14 21 21 H 1.08005 * 120.00032 * 179.97438 * 1 2 3 22 22 H 1.08006 * 120.00004 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00223 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47104 * 4.13143 * 3 2 1 25 25 H 1.08996 * 109.47179 * 244.13170 * 3 2 1 26 26 H 1.08997 * 109.47650 * 306.04947 * 5 4 3 27 27 H 1.09002 * 109.47357 * 186.04782 * 5 4 3 28 28 H 0.97002 * 119.99691 * 359.97438 * 9 8 6 29 29 H 1.09004 * 117.50355 * 214.98122 * 16 14 4 30 30 H 1.09004 * 117.49623 * 359.97438 * 16 14 4 31 31 H 1.09002 * 109.46933 * 304.99404 * 19 17 14 32 32 H 1.08996 * 109.47448 * 64.99712 * 19 17 14 33 33 H 0.96703 * 113.99594 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9813 1.3407 1.1464 5 6 4.0197 0.3091 1.0215 6 6 4.9046 0.6271 -0.1562 7 1 4.7143 1.5072 -0.7525 8 6 5.9570 -0.2055 -0.4723 9 7 6.1885 -1.2776 0.2535 10 14 7.0535 0.1882 -1.9326 11 1 6.5847 1.4396 -2.5802 12 1 6.9952 -0.9278 -2.9105 13 1 8.4525 0.3663 -1.4674 14 6 2.2487 1.1997 2.4118 15 1 1.9570 0.1830 2.6755 16 6 2.6234 2.1458 3.5543 17 6 1.2997 2.3322 2.8087 18 1 1.2186 3.1817 2.1306 19 6 0.0142 1.9512 3.5458 20 8 -0.7933 3.1160 3.7283 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3575 2.1322 0.0740 25 1 2.6334 1.3956 -0.9247 26 1 3.5501 -0.6629 0.8711 27 1 4.6199 0.2858 1.9311 28 1 5.6189 -1.4822 1.0115 29 1 2.5780 1.7519 4.5696 30 1 3.4139 2.8727 3.3670 31 1 -0.5365 1.2157 2.9593 32 1 0.2649 1.5268 4.5179 33 1 -1.6265 2.9485 4.1898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308299180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = -28.877407 kcal Electronic energy + Delta-G solvation = -14147.584450 eV Core-core repulsion = 11787.612123 eV Total energy + Delta-G solvation = -2359.972328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05404 -37.84286 -36.12770 -35.12803 -33.09711 -28.51738 -27.87215 -26.26407 -24.15693 -22.08817 -21.66602 -20.30450 -18.71777 -18.30924 -17.36480 -16.21382 -16.03135 -15.76029 -15.60251 -15.00588 -14.96060 -14.30891 -13.88307 -13.45497 -13.10260 -13.01451 -12.49538 -12.44823 -12.20138 -12.01574 -11.92894 -11.63813 -11.10270 -10.92406 -10.59845 -10.52821 -10.32975 -9.11918 -8.68029 -6.38060 1.32543 1.52276 1.61648 1.78847 2.53238 2.68317 2.95219 3.14990 3.50731 3.87041 3.98065 4.12857 4.16425 4.30160 4.32994 4.44991 4.52636 4.69854 4.77267 4.82770 4.88947 5.01098 5.03047 5.14402 5.27072 5.64805 5.71175 5.85906 5.98508 6.36581 6.43703 6.65820 6.92564 7.41553 8.70797 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.042238 B = 0.007640 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.756346 B = 3664.225603 C = 3966.688867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.194 4.194 3 C 0.094 3.906 4 N -0.509 5.509 5 C 0.199 3.801 6 C -0.596 4.596 7 H 0.052 0.948 8 C -0.036 4.036 9 N -0.939 5.939 10 Si 1.124 2.876 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.007 3.993 15 H 0.073 0.927 16 C -0.159 4.159 17 C -0.126 4.126 18 H 0.099 0.901 19 C 0.114 3.886 20 O -0.588 6.588 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.064 0.936 26 H -0.031 1.031 27 H -0.006 1.006 28 H 0.253 0.747 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.654 4.818 4.553 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.214 4.214 3 C -0.033 4.033 4 N -0.231 5.231 5 C 0.073 3.927 6 C -0.634 4.634 7 H 0.070 0.930 8 C -0.234 4.234 9 N -0.577 5.577 10 Si 0.946 3.054 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.102 4.102 15 H 0.091 0.909 16 C -0.197 4.197 17 C -0.145 4.145 18 H 0.117 0.883 19 C 0.037 3.963 20 O -0.396 6.396 21 H 0.127 0.873 22 H 0.130 0.870 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.083 0.917 26 H -0.014 1.014 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.609 5.051 3.406 13.110 hybrid contribution -1.762 -0.935 1.242 2.350 sum -13.370 4.116 4.648 14.742 Atomic orbital electron populations 1.23900 0.94428 1.02741 0.99295 1.23482 0.97300 0.99092 1.01518 1.21174 0.93768 0.94265 0.94060 1.62038 1.11818 1.48706 1.00530 1.19459 0.89541 0.88121 0.95589 1.22311 1.15252 1.11617 1.14234 0.92985 1.27359 0.98930 0.92862 1.04205 1.70869 1.40801 1.27216 1.18775 0.82836 0.74363 0.76134 0.72093 1.19652 1.20397 1.20431 1.22380 1.01369 0.93789 0.92682 0.90891 1.23299 0.98132 1.02009 0.96258 1.22213 0.90683 0.99541 1.02093 0.88280 1.21607 0.89378 0.86882 0.98461 1.86431 1.36554 1.34566 1.82089 0.87302 0.87046 0.90470 0.89950 0.91747 1.01365 0.98801 0.93724 0.86896 0.89579 0.92364 0.91989 0.75032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 14.32 67.79 0.97 -3.62 16 2 C -0.19 -7.07 8.09 25.65 0.21 -6.86 16 3 C 0.09 3.77 5.54 85.56 0.47 4.25 16 4 N -0.51 -22.64 4.83 -880.09 -4.25 -26.89 16 5 C 0.20 10.73 3.88 85.56 0.33 11.06 16 6 C -0.60 -34.66 8.45 25.60 0.22 -34.44 16 7 H 0.05 3.03 7.13 -2.91 -0.02 3.01 16 8 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 9 N -0.94 -58.66 13.65 21.45 0.29 -58.37 16 10 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.01 0.25 3.93 44.91 0.18 0.43 16 15 H 0.07 2.70 8.04 -2.39 -0.02 2.68 16 16 C -0.16 -5.10 10.11 30.62 0.31 -4.79 16 17 C -0.13 -3.78 5.44 -10.77 -0.06 -3.84 16 18 H 0.10 3.24 7.91 -2.39 -0.02 3.22 16 19 C 0.11 2.56 7.33 71.98 0.53 3.09 16 20 O -0.59 -12.53 13.66 -148.98 -2.04 -14.57 16 21 H 0.11 2.58 8.06 -2.91 -0.02 2.55 16 22 H 0.11 2.68 7.84 -2.91 -0.02 2.66 16 23 H 0.08 3.27 6.82 -2.91 -0.02 3.25 16 24 H 0.08 2.88 7.21 -2.39 -0.02 2.86 16 25 H 0.06 2.88 6.74 -2.39 -0.02 2.86 16 26 H -0.03 -1.76 6.24 -2.39 -0.01 -1.78 16 27 H -0.01 -0.35 7.94 -2.39 -0.02 -0.37 16 28 H 0.25 16.08 7.22 -92.71 -0.67 15.41 16 29 H 0.11 3.01 8.03 -2.38 -0.02 2.99 16 30 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.20 7.88 -2.39 -0.02 1.18 16 33 H 0.40 4.17 9.12 -74.06 -0.68 3.49 16 Total: -1.00 -68.75 278.36 0.19 -68.56 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.51 Total: 14.20 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.62 Total: -36.39 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -3.96 Total: -85.26 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -2.04 Total: -14.57 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -68.75 0.19 -68.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308299180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.683 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds