Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.53000 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47591 * 304.99926 * 4 3 2 6 6 N 1.46500 * 109.47194 * 65.00598 * 4 3 2 7 7 C 1.34773 * 120.00128 * 204.99909 * 6 4 3 8 8 O 1.21689 * 120.00052 * 359.97438 * 7 6 4 9 9 C 1.46374 * 119.99997 * 179.97438 * 7 6 4 10 10 H 1.08003 * 120.00337 * 353.94042 * 9 7 6 11 11 C 1.40048 * 119.99925 * 173.94619 * 9 7 6 12 12 N 1.30673 * 120.00239 * 6.15139 * 11 9 7 13 13 Si 1.86803 * 120.00096 * 186.15606 * 11 9 7 14 14 H 1.48496 * 109.47463 * 94.97624 * 13 11 9 15 15 H 1.48497 * 109.47204 * 214.98446 * 13 11 9 16 16 H 1.48507 * 109.46758 * 334.98066 * 13 11 9 17 17 C 1.53004 * 109.47054 * 184.99930 * 4 3 2 18 18 C 1.53004 * 117.51748 * 111.28440 * 17 4 3 19 19 C 1.53001 * 117.49896 * 179.91349 * 17 4 3 20 20 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46841 * 299.99733 * 1 2 3 22 22 H 1.09003 * 109.46786 * 59.99701 * 1 2 3 23 23 H 1.09003 * 109.47135 * 239.99813 * 2 1 3 24 24 H 1.09003 * 109.46786 * 120.00299 * 2 1 3 25 25 H 1.09002 * 109.46882 * 60.00292 * 3 2 1 26 26 H 1.09001 * 109.46969 * 300.00287 * 3 2 1 27 27 H 0.97001 * 119.99727 * 24.98972 * 6 4 3 28 28 H 0.97002 * 119.99816 * 180.02562 * 12 11 9 29 29 H 1.08996 * 115.55211 * 325.58985 * 17 4 3 30 30 H 1.08995 * 117.49780 * 214.97609 * 18 17 4 31 31 H 1.08998 * 117.49721 * 359.97438 * 18 17 4 32 32 H 1.08996 * 117.49621 * 359.97438 * 19 17 4 33 33 H 1.08997 * 117.49460 * 144.99998 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9331 0.8530 0.8427 6 7 4.0589 0.8585 -1.2509 7 6 5.2808 0.2919 -1.2982 8 8 5.9783 0.2656 -0.3013 9 6 5.7690 -0.2919 -2.5485 10 1 5.1151 -0.3569 -3.4057 11 6 7.0839 -0.7663 -2.6334 12 7 7.8369 -0.7990 -1.5659 13 14 7.7616 -1.3523 -4.2726 14 1 8.4955 -0.2416 -4.9304 15 1 8.6866 -2.4918 -4.0469 16 1 6.6410 -1.7894 -5.1436 17 6 4.0801 2.8794 0.1264 18 6 4.7797 3.2697 1.4299 19 6 5.5952 3.0919 0.1476 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.5030 0.8797 -2.0456 28 1 8.7478 -1.1272 -1.6248 29 1 3.4722 3.6387 -0.3654 30 1 4.6319 4.2858 1.7957 31 1 4.8762 2.5028 2.1984 32 1 6.2285 2.2080 0.0725 33 1 5.9839 3.9912 -0.3302 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323912059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -37.309265 kcal Electronic energy + Delta-G solvation = -14308.440183 eV Core-core repulsion = 11948.102223 eV Total energy + Delta-G solvation = -2360.337960 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.41038 -35.87518 -34.70950 -32.56152 -31.78824 -28.52499 -26.00599 -23.66300 -21.60498 -20.70030 -20.27282 -19.15761 -17.09921 -15.52956 -14.97868 -14.86655 -14.30571 -14.04412 -13.75534 -13.06545 -12.35037 -12.19794 -12.04749 -11.70778 -11.16432 -11.10196 -10.99186 -10.73752 -10.56996 -10.48368 -10.36003 -10.30010 -10.15228 -9.58547 -9.32918 -8.81357 -7.54266 -7.31964 -6.15788 -4.59161 3.15345 3.22891 3.25978 4.12373 4.43865 4.61662 5.01701 5.11662 5.32377 5.38865 5.53134 5.71919 5.73527 5.81246 5.86284 5.97495 6.06601 6.11161 6.14514 6.25207 6.36290 6.45648 6.64162 6.69991 6.71900 6.88045 7.35138 7.47750 8.01171 8.21094 8.39964 9.06819 9.62657 10.64084 10.84561 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.009492 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.375849 B = 2949.258520 C = 3636.457781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.119 4.119 4 C 0.183 3.817 5 H 0.075 0.925 6 N -0.757 5.757 7 C 0.560 3.440 8 O -0.578 6.578 9 C -0.547 4.547 10 H 0.065 0.935 11 C 0.089 3.911 12 N -0.768 5.768 13 Si 0.904 3.096 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.164 4.164 18 C -0.185 4.185 19 C -0.176 4.176 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.378 0.622 28 H 0.267 0.733 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.432 4.009 1.039 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.157 4.157 4 C 0.077 3.923 5 H 0.093 0.907 6 N -0.410 5.410 7 C 0.364 3.636 8 O -0.461 6.461 9 C -0.584 4.584 10 H 0.084 0.916 11 C -0.130 4.130 12 N -0.396 5.396 13 Si 0.729 3.271 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.183 4.183 18 C -0.223 4.223 19 C -0.213 4.213 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.209 0.791 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.741 3.921 1.864 9.760 hybrid contribution 0.060 -0.085 -1.250 1.254 sum -8.681 3.837 0.615 9.511 Atomic orbital electron populations 1.21778 0.96577 1.01105 1.01221 1.21503 0.94706 0.97114 1.02828 1.21819 0.95500 0.96728 1.01622 1.20107 0.91263 0.90491 0.90436 0.90745 1.46159 1.20095 1.64318 1.10441 1.18113 0.78651 0.77295 0.89498 1.90508 1.56272 1.62299 1.37065 1.20903 0.97805 1.42292 0.97376 0.91628 1.25669 0.96794 0.93645 0.96914 1.70020 1.07231 1.34120 1.28260 0.86422 0.79202 0.78635 0.82856 1.19886 1.20535 1.18975 1.22720 0.96237 0.98502 1.00878 1.22847 1.06768 1.00887 0.91782 1.23376 0.94525 1.04482 0.98911 0.93148 0.93211 0.93058 0.91274 0.92228 0.91729 0.92212 0.79112 0.92240 0.89392 0.90263 0.89300 0.84682 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.80 5.82 -26.73 -0.16 -1.95 16 3 C -0.12 -1.76 4.74 -26.73 -0.13 -1.89 16 4 C 0.18 3.52 2.27 -67.93 -0.15 3.36 16 5 H 0.07 1.64 7.34 -51.93 -0.38 1.26 16 6 N -0.76 -16.61 4.51 -55.21 -0.25 -16.86 16 7 C 0.56 15.45 7.07 -12.99 -0.09 15.35 16 8 O -0.58 -17.80 12.07 5.20 0.06 -17.74 16 9 C -0.55 -15.30 9.53 -35.63 -0.34 -15.64 16 10 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 11 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 12 N -0.77 -22.76 11.85 55.55 0.66 -22.10 16 13 Si 0.90 20.20 29.56 -169.99 -5.03 15.17 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 C -0.16 -3.01 5.36 -90.61 -0.49 -3.50 16 18 C -0.19 -3.26 10.18 -26.73 -0.27 -3.53 16 19 C -0.18 -3.67 9.73 -26.73 -0.26 -3.93 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.38 7.47 8.58 -40.82 -0.35 7.12 16 28 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 29 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.60 8.05 -51.93 -0.42 1.19 16 32 H 0.14 3.49 5.01 -51.93 -0.26 3.23 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 275.55 15.07 4.15 4.15 Total: -1.00 -31.41 275.55 -7.18 -38.58 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.16 Total: 9.50 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.61 Total: -10.70 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.41 Total: -38.96 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.06 Total: -17.74 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.41 -7.18 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323912059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.273 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds