Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.53000 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47591 * 304.99926 * 4 3 2 6 6 N 1.46500 * 109.47194 * 65.00598 * 4 3 2 7 7 C 1.34773 * 120.00128 * 204.99909 * 6 4 3 8 8 O 1.21689 * 120.00052 * 359.97438 * 7 6 4 9 9 C 1.46374 * 119.99997 * 179.97438 * 7 6 4 10 10 H 1.08003 * 120.00337 * 353.94042 * 9 7 6 11 11 C 1.40048 * 119.99925 * 173.94619 * 9 7 6 12 12 N 1.30673 * 120.00239 * 6.15139 * 11 9 7 13 13 Si 1.86803 * 120.00096 * 186.15606 * 11 9 7 14 14 H 1.48496 * 109.47463 * 94.97624 * 13 11 9 15 15 H 1.48497 * 109.47204 * 214.98446 * 13 11 9 16 16 H 1.48507 * 109.46758 * 334.98066 * 13 11 9 17 17 C 1.53004 * 109.47054 * 184.99930 * 4 3 2 18 18 C 1.53004 * 117.51748 * 111.28440 * 17 4 3 19 19 C 1.53001 * 117.49896 * 179.91349 * 17 4 3 20 20 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46841 * 299.99733 * 1 2 3 22 22 H 1.09003 * 109.46786 * 59.99701 * 1 2 3 23 23 H 1.09003 * 109.47135 * 239.99813 * 2 1 3 24 24 H 1.09003 * 109.46786 * 120.00299 * 2 1 3 25 25 H 1.09002 * 109.46882 * 60.00292 * 3 2 1 26 26 H 1.09001 * 109.46969 * 300.00287 * 3 2 1 27 27 H 0.97001 * 119.99727 * 24.98972 * 6 4 3 28 28 H 0.97002 * 119.99816 * 180.02562 * 12 11 9 29 29 H 1.08996 * 115.55211 * 325.58985 * 17 4 3 30 30 H 1.08995 * 117.49780 * 214.97609 * 18 17 4 31 31 H 1.08998 * 117.49721 * 359.97438 * 18 17 4 32 32 H 1.08996 * 117.49621 * 359.97438 * 19 17 4 33 33 H 1.08997 * 117.49460 * 144.99998 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9331 0.8530 0.8427 6 7 4.0589 0.8585 -1.2509 7 6 5.2808 0.2919 -1.2982 8 8 5.9783 0.2656 -0.3013 9 6 5.7690 -0.2919 -2.5485 10 1 5.1151 -0.3569 -3.4057 11 6 7.0839 -0.7663 -2.6334 12 7 7.8369 -0.7990 -1.5659 13 14 7.7616 -1.3523 -4.2726 14 1 8.4955 -0.2416 -4.9304 15 1 8.6866 -2.4918 -4.0469 16 1 6.6410 -1.7894 -5.1436 17 6 4.0801 2.8794 0.1264 18 6 4.7797 3.2697 1.4299 19 6 5.5952 3.0919 0.1476 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.5030 0.8797 -2.0456 28 1 8.7478 -1.1272 -1.6248 29 1 3.4722 3.6387 -0.3654 30 1 4.6319 4.2858 1.7957 31 1 4.8762 2.5028 2.1984 32 1 6.2285 2.2080 0.0725 33 1 5.9839 3.9912 -0.3302 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323912059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -57.898173 kcal Electronic energy + Delta-G solvation = -14309.332986 eV Core-core repulsion = 11948.102223 eV Total energy + Delta-G solvation = -2361.230762 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.15003 -37.75425 -36.05992 -34.61684 -33.55674 -30.06525 -27.98265 -25.00647 -23.15432 -22.28232 -21.78209 -20.88542 -19.08861 -17.48688 -16.74311 -16.26325 -15.95871 -15.59810 -15.35926 -14.47146 -14.03134 -13.92921 -13.48097 -13.24553 -12.83083 -12.70665 -12.52807 -12.39226 -12.22097 -12.05393 -11.96251 -11.75377 -11.48361 -11.12675 -10.89599 -10.83064 -9.70492 -9.23729 -8.24881 -6.78706 1.39494 1.40376 1.55471 2.25410 2.52976 2.84456 3.46135 3.61132 3.77614 4.14181 4.16377 4.23136 4.29488 4.39707 4.47092 4.74757 4.80605 4.86629 4.93871 4.96580 5.11460 5.21193 5.28100 5.34547 5.36602 5.42681 5.53499 5.59503 5.97790 6.31542 6.43888 6.92429 7.67371 8.57699 8.76222 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.009492 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.375849 B = 2949.258520 C = 3636.457781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C -0.106 4.106 4 C 0.180 3.820 5 H 0.035 0.965 6 N -0.744 5.744 7 C 0.547 3.453 8 O -0.619 6.619 9 C -0.577 4.577 10 H 0.081 0.919 11 C 0.032 3.968 12 N -0.820 5.820 13 Si 0.991 3.009 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.250 1.250 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.209 4.209 20 H 0.054 0.946 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.390 0.610 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 5.041 -0.147 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.144 4.144 4 C 0.074 3.926 5 H 0.054 0.946 6 N -0.397 5.397 7 C 0.351 3.649 8 O -0.506 6.506 9 C -0.614 4.614 10 H 0.099 0.901 11 C -0.183 4.183 12 N -0.450 5.450 13 Si 0.811 3.189 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.173 1.173 17 C -0.174 4.174 18 C -0.197 4.197 19 C -0.246 4.246 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.223 0.777 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.738 4.969 0.674 11.851 hybrid contribution 0.635 -0.394 -0.809 1.101 sum -10.103 4.575 -0.135 11.092 Atomic orbital electron populations 1.21712 0.93764 1.01933 1.02504 1.21487 0.97125 0.96602 1.01049 1.21757 0.91554 0.97357 1.03702 1.20278 0.94376 0.90315 0.87630 0.94627 1.45849 1.18554 1.63263 1.12036 1.18379 0.79918 0.77530 0.89094 1.90487 1.57946 1.63804 1.38341 1.21431 0.98926 1.42932 0.98115 0.90086 1.26858 0.96867 0.93175 1.01415 1.70186 1.07884 1.35506 1.31425 0.85109 0.78639 0.78183 0.76984 1.18998 1.19882 1.17335 1.22817 0.94551 0.98489 1.01586 1.22902 1.03821 1.02555 0.90443 1.23130 0.95659 1.02945 1.02865 0.92678 0.91796 0.91834 0.93349 0.93899 0.89372 0.90134 0.77664 0.91845 0.86207 0.86408 0.90522 0.90120 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.91 71.98 0.71 -2.19 16 2 C -0.12 -3.47 5.82 30.59 0.18 -3.29 16 3 C -0.11 -2.89 4.74 30.59 0.14 -2.74 16 4 C 0.18 6.85 2.27 44.99 0.10 6.96 16 5 H 0.04 1.64 7.34 -2.39 -0.02 1.62 16 6 N -0.74 -33.10 4.51 -446.82 -2.01 -35.11 16 7 C 0.55 31.34 7.07 86.36 0.61 31.95 16 8 O -0.62 -40.40 12.07 -4.31 -0.05 -40.45 16 9 C -0.58 -32.96 9.53 24.83 0.24 -32.73 16 10 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 11 C 0.03 1.79 5.49 85.30 0.47 2.26 16 12 N -0.82 -50.56 11.85 21.84 0.26 -50.31 16 13 Si 0.99 41.72 29.56 68.60 2.03 43.75 16 14 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 17 C -0.16 -5.49 5.36 -10.79 -0.06 -5.54 16 18 C -0.16 -5.41 10.18 30.60 0.31 -5.10 16 19 C -0.21 -8.83 9.73 30.60 0.30 -8.54 16 20 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.52 7.75 -2.39 -0.02 1.51 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 27 H 0.39 15.26 8.58 -92.71 -0.80 14.46 16 28 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 29 H 0.12 3.52 8.11 -2.39 -0.02 3.50 16 30 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.08 2.78 8.05 -2.39 -0.02 2.76 16 32 H 0.08 4.43 5.01 -2.39 -0.01 4.42 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -72.27 275.55 3.52 -68.76 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.29 Total: 32.32 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.01 Total: -18.96 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.75 Total: -85.42 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.05 Total: -40.45 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.27 3.52 -68.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323912059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.858 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds