Wall clock time and date at job start Mon Mar 30 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 H 1.08993 * 109.47532 * 54.99765 * 3 2 1 5 5 C 1.53005 * 109.46936 * 175.00272 * 3 2 1 6 6 C 1.52995 * 117.49500 * 248.74604 * 5 3 2 7 7 C 1.52997 * 117.49917 * 180.08839 * 5 3 2 8 8 N 1.46502 * 109.46792 * 294.99521 * 3 2 1 9 9 C 1.46491 * 120.00503 * 300.00094 * 8 3 2 10 10 C 1.34779 * 119.99402 * 120.00419 * 8 3 2 11 11 O 1.21684 * 120.00084 * 359.97438 * 10 8 3 12 12 C 1.46376 * 119.99849 * 179.72407 * 10 8 3 13 13 H 1.08004 * 120.00058 * 352.69582 * 12 10 8 14 14 C 1.40052 * 120.00172 * 172.68879 * 12 10 8 15 15 N 1.30663 * 119.99619 * 6.03052 * 14 12 10 16 16 Si 1.86793 * 119.99885 * 186.02641 * 14 12 10 17 17 H 1.48499 * 109.46952 * 94.98294 * 16 14 12 18 18 H 1.48502 * 109.47010 * 214.98159 * 16 14 12 19 19 H 1.48496 * 109.47377 * 334.98220 * 16 14 12 20 20 H 1.08993 * 109.47246 * 60.00461 * 1 2 3 21 21 H 1.09010 * 109.47023 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47048 * 299.99715 * 1 2 3 23 23 H 1.09005 * 109.46816 * 239.99636 * 2 1 3 24 24 H 1.09007 * 109.46870 * 119.99992 * 2 1 3 25 25 H 1.09001 * 115.55162 * 34.40810 * 5 3 2 26 26 H 1.08997 * 117.50237 * 359.97438 * 6 5 3 27 27 H 1.09001 * 117.50387 * 145.02312 * 6 5 3 28 28 H 1.08994 * 117.49789 * 214.98161 * 7 5 3 29 29 H 1.09000 * 117.49762 * 359.96866 * 7 5 3 30 30 H 1.09000 * 109.47319 * 270.00097 * 9 8 3 31 31 H 1.09004 * 109.46992 * 30.00268 * 9 8 3 32 32 H 1.09004 * 109.47449 * 149.99783 * 9 8 3 33 33 H 0.97006 * 120.00270 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4443 0.1257 6 6 4.1655 1.9736 1.4294 7 6 4.2704 2.8017 0.1464 8 7 1.6524 2.0974 -1.2519 9 6 2.1139 1.5589 -2.5337 10 6 0.8714 3.1954 -1.2242 11 8 0.4877 3.6425 -0.1595 12 6 0.4891 3.8533 -2.4746 13 1 0.9258 3.5328 -3.4090 14 6 -0.4431 4.8984 -2.4595 15 7 -0.8829 5.3651 -1.3211 16 14 -1.0576 5.6251 -4.0669 17 1 -2.3317 4.9670 -4.4525 18 1 -1.2852 7.0826 -3.8962 19 1 -0.0445 5.4035 -5.1297 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.0781 0.6177 -0.3658 26 1 3.4745 2.3210 2.1974 27 1 5.0742 1.4957 1.7955 28 1 5.2478 2.8682 -0.3313 29 1 3.6482 3.6935 0.0699 30 1 3.0653 2.0194 -2.7999 31 1 2.2436 0.4799 -2.4490 32 1 1.3761 1.7765 -3.3061 33 1 -1.5283 6.0892 -1.3105 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325136135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:06 Heat of formation + Delta-G solvation = -40.986473 kcal Electronic energy + Delta-G solvation = -14672.702060 eV Core-core repulsion = 12312.204643 eV Total energy + Delta-G solvation = -2360.497416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31059 -38.00292 -35.74411 -34.58145 -33.46266 -29.00671 -27.69311 -26.68304 -23.29816 -22.66278 -22.07205 -20.20421 -18.42795 -17.71520 -16.85332 -16.30175 -15.81540 -15.60538 -15.13157 -14.54171 -14.10547 -13.66187 -13.38841 -13.13850 -13.07785 -13.00092 -12.75505 -12.40735 -12.17766 -12.16709 -12.07568 -11.86696 -11.56383 -11.18706 -10.96789 -10.90913 -9.69392 -8.94253 -8.26804 -6.79982 1.38167 1.39283 1.54682 2.23475 2.49113 2.70804 3.25424 3.64064 3.67502 4.07324 4.18067 4.24316 4.34947 4.41386 4.54600 4.65936 4.76987 4.87441 4.89928 4.99505 5.04475 5.08934 5.14130 5.24470 5.28682 5.38004 5.43126 5.44059 5.86796 6.19747 6.55098 6.90795 7.51366 8.53294 8.72245 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035515 B = 0.009878 C = 0.009264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.215783 B = 2833.915128 C = 3021.783164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.167 3.833 4 H 0.044 0.956 5 C -0.154 4.154 6 C -0.162 4.162 7 C -0.182 4.182 8 N -0.632 5.632 9 C 0.101 3.899 10 C 0.545 3.455 11 O -0.634 6.634 12 C -0.571 4.571 13 H 0.089 0.911 14 C 0.029 3.971 15 N -0.824 5.824 16 Si 0.992 3.008 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.247 1.247 20 H 0.027 0.973 21 H 0.076 0.924 22 H 0.027 0.973 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -9.813 -2.047 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.063 3.937 4 H 0.063 0.937 5 C -0.173 4.173 6 C -0.199 4.199 7 C -0.219 4.219 8 N -0.367 5.367 9 C -0.042 4.042 10 C 0.350 3.650 11 O -0.521 6.521 12 C -0.607 4.607 13 H 0.107 0.893 14 C -0.186 4.186 15 N -0.453 5.453 16 Si 0.811 3.189 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.170 1.170 20 H 0.046 0.954 21 H 0.095 0.905 22 H 0.046 0.954 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.232 -9.473 -1.387 11.998 hybrid contribution -0.609 0.878 -0.373 1.131 sum 6.623 -8.595 -1.760 10.993 Atomic orbital electron populations 1.21614 0.96936 1.01174 1.00064 1.21779 0.95185 0.95049 1.03394 1.20413 0.91905 0.93533 0.87855 0.93731 1.22700 0.94413 0.97921 1.02222 1.23021 1.03183 1.03300 0.90401 1.22696 1.01696 0.94481 1.03065 1.47694 1.53538 1.29665 1.05842 1.21474 0.98630 0.98546 0.85542 1.18542 0.77187 0.79285 0.89981 1.90528 1.60008 1.67363 1.34250 1.21519 1.26992 1.18487 0.93727 0.89299 1.26960 0.94890 0.95595 1.01155 1.70209 1.24417 1.21458 1.29261 0.85097 0.79281 0.77337 0.77162 1.18818 1.19955 1.17049 0.95400 0.90501 0.95403 0.89948 0.89410 0.85237 0.90725 0.85600 0.87052 0.93468 0.94318 0.90299 0.92314 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.80 71.98 0.71 -4.20 16 2 C -0.12 -3.55 5.34 30.59 0.16 -3.39 16 3 C 0.17 6.56 2.22 44.99 0.10 6.66 16 4 H 0.04 2.18 6.65 -2.39 -0.02 2.16 16 5 C -0.15 -4.80 4.83 -10.79 -0.05 -4.86 16 6 C -0.16 -4.67 10.18 30.62 0.31 -4.36 16 7 C -0.18 -6.21 10.13 30.62 0.31 -5.90 16 8 N -0.63 -28.72 2.09 -827.69 -1.73 -30.45 16 9 C 0.10 3.64 9.46 127.77 1.21 4.85 16 10 C 0.54 32.06 7.60 86.36 0.66 32.72 16 11 O -0.63 -43.33 14.38 -4.30 -0.06 -43.39 16 12 C -0.57 -32.85 8.65 24.83 0.21 -32.63 16 13 H 0.09 4.61 6.15 -2.91 -0.02 4.59 16 14 C 0.03 1.63 5.49 85.31 0.47 2.10 16 15 N -0.82 -51.61 11.86 21.84 0.26 -51.35 16 16 Si 0.99 41.86 29.56 68.60 2.03 43.89 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 20 H 0.03 1.13 7.75 -2.39 -0.02 1.11 16 21 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 22 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 23 H 0.08 2.15 6.48 -2.38 -0.02 2.13 16 24 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.13 3.21 8.11 -2.39 -0.02 3.19 16 26 H 0.07 2.42 8.05 -2.39 -0.02 2.40 16 27 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.22 6.34 -2.39 -0.02 2.21 16 32 H 0.06 2.22 6.21 -2.38 -0.01 2.21 16 33 H 0.27 15.47 8.29 -92.70 -0.77 14.70 16 Total: -1.00 -76.15 273.96 5.66 -70.49 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.08 Total: 19.82 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 4.09 Total: -9.01 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.48 Total: -81.80 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.06 Total: -43.39 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -76.15 5.66 -70.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325136135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.506 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds