Wall clock time and date at job start Mon Mar 30 2020 02:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 C 1.52998 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.55967 * 29.30683 * 4 3 2 6 6 C 1.53001 * 117.49462 * 243.62224 * 4 3 2 7 7 C 1.52994 * 117.49875 * 175.00011 * 4 3 2 8 8 H 1.08999 * 117.52097 * 214.96903 * 7 4 3 9 9 C 1.50704 * 117.50190 * 359.97438 * 7 4 3 10 10 O 1.21291 * 119.99660 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00223 * 180.02562 * 9 7 4 12 12 C 1.46496 * 120.00143 * 359.97438 * 11 9 7 13 13 C 1.37099 * 119.99962 * 180.02562 * 11 9 7 14 14 H 1.08002 * 119.99942 * 334.67777 * 13 11 9 15 15 C 1.38948 * 119.99996 * 154.95818 * 13 11 9 16 16 N 1.31409 * 120.00240 * 348.48404 * 15 13 11 17 17 Si 1.86806 * 119.99954 * 168.48484 * 15 13 11 18 18 H 1.48499 * 109.46792 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47087 * 119.99856 * 17 15 13 20 20 H 1.48498 * 109.46933 * 240.00146 * 17 15 13 21 21 H 1.09004 * 109.47155 * 60.00425 * 1 2 3 22 22 H 1.09005 * 109.47267 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47239 * 300.00048 * 1 2 3 24 24 H 1.09000 * 109.46919 * 239.99515 * 2 1 3 25 25 H 1.09007 * 109.46801 * 119.99949 * 2 1 3 26 26 H 1.09003 * 109.47028 * 59.99314 * 3 2 1 27 27 H 1.09004 * 109.46652 * 299.99883 * 3 2 1 28 28 H 1.09000 * 117.50023 * 145.02374 * 6 4 3 29 29 H 1.08992 * 117.51919 * 359.97438 * 6 4 3 30 30 H 1.08998 * 109.47631 * 275.14451 * 12 11 9 31 31 H 1.09005 * 109.46742 * 35.14030 * 12 11 9 32 32 H 1.08997 * 109.47503 * 155.14053 * 12 11 9 33 33 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5849 -0.4804 6 6 4.2758 2.0456 1.2167 7 6 4.2765 2.7944 -0.1175 8 1 5.2119 2.8267 -0.6761 9 6 3.4121 4.0241 -0.2263 10 8 2.2038 3.9187 -0.2175 11 7 3.9817 5.2409 -0.3332 12 6 5.4411 5.3682 -0.3432 13 6 3.1954 6.3596 -0.4316 14 1 2.1931 6.2821 -0.8264 15 6 3.6899 7.5940 -0.0288 16 7 4.8127 7.6622 0.6506 17 14 2.7587 9.1569 -0.4530 18 1 1.5339 8.8110 -1.2182 19 1 2.3790 9.8618 0.7975 20 1 3.6231 10.0401 -1.2763 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 1.6766 1.9563 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 5.2108 1.5850 1.5358 29 1 3.6506 2.4429 2.0162 30 1 5.8103 5.3984 0.6819 31 1 5.8768 4.5138 -0.8612 32 1 5.7222 6.2870 -0.8578 33 1 5.1577 8.5239 0.9321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379385843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:26 Heat of formation + Delta-G solvation = -17.767601 kcal Electronic energy + Delta-G solvation = -14228.482745 eV Core-core repulsion = 11868.992175 eV Total energy + Delta-G solvation = -2359.490570 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.03738 -36.41833 -34.38593 -33.46176 -31.49957 -27.10035 -26.33432 -24.78669 -22.59746 -21.48689 -20.25089 -18.15008 -16.83202 -16.25305 -14.89968 -14.63157 -14.25330 -14.05165 -13.52597 -13.27750 -12.65130 -12.20445 -11.88187 -11.68926 -11.56624 -11.30903 -11.21485 -10.87082 -10.76970 -10.58692 -10.49829 -10.28376 -10.23696 -9.53169 -9.30982 -8.95409 -8.12121 -7.57432 -6.27475 -3.84046 3.16849 3.27309 3.34352 3.73692 4.15296 4.49567 4.88425 5.05870 5.16474 5.37817 5.49023 5.55907 5.63236 5.65746 5.90006 5.93062 6.12613 6.15467 6.21584 6.32273 6.37704 6.46785 6.55900 6.59656 6.82625 6.93321 7.16386 7.26711 7.60443 8.21739 8.55824 9.25151 9.49627 10.08502 10.77517 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.043648 B = 0.007899 C = 0.006931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.343519 B = 3544.107551 C = 4038.687621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.074 4.074 4 C -0.126 4.126 5 H 0.099 0.901 6 C -0.158 4.158 7 C -0.172 4.172 8 H 0.108 0.892 9 C 0.477 3.523 10 O -0.583 6.583 11 N -0.446 5.446 12 C 0.115 3.885 13 C -0.303 4.303 14 H 0.097 0.903 15 C 0.029 3.971 16 N -0.884 5.884 17 Si 0.925 3.075 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 -9.619 -0.881 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.112 4.112 4 C -0.145 4.145 5 H 0.117 0.883 6 C -0.195 4.195 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.265 3.735 10 O -0.468 6.468 11 N -0.164 5.164 12 C -0.029 4.029 13 C -0.431 4.431 14 H 0.115 0.885 15 C -0.174 4.174 16 N -0.524 5.524 17 Si 0.752 3.248 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.207 1.207 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.012 -9.468 -0.808 9.502 hybrid contribution 0.043 0.961 -0.073 0.965 sum 0.055 -8.507 -0.882 8.552 Atomic orbital electron populations 1.21740 0.96364 1.00541 1.02058 1.21622 0.95526 0.98213 1.00890 1.21175 0.91502 0.94136 1.04349 1.22305 0.95976 0.94789 1.01408 0.88319 1.22947 1.02149 1.03068 0.91378 1.22303 1.01384 0.93254 1.02398 0.87364 1.19211 0.87799 0.83626 0.82865 1.90492 1.14499 1.85868 1.55894 1.43524 1.05667 1.04901 1.62318 1.21456 0.81240 0.99315 1.00915 1.19678 0.99218 0.84331 1.39912 0.88520 1.25351 0.96861 0.99620 0.95571 1.70003 1.21071 1.25650 1.35628 0.85881 0.79527 0.81148 0.78260 1.19262 1.20775 1.20714 0.92756 0.93556 0.92829 0.92813 0.92771 0.91348 0.90223 0.89058 0.88749 0.93227 0.95715 0.90827 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.72 5.89 -26.73 -0.16 -1.88 16 3 C -0.07 -1.31 3.75 -26.73 -0.10 -1.41 16 4 C -0.13 -2.11 5.74 -90.62 -0.52 -2.63 16 5 H 0.10 1.39 8.08 -51.93 -0.42 0.98 16 6 C -0.16 -2.66 9.88 -26.73 -0.26 -2.92 16 7 C -0.17 -3.34 5.30 -91.77 -0.49 -3.82 16 8 H 0.11 1.90 6.51 -51.93 -0.34 1.56 16 9 C 0.48 11.89 7.39 -10.98 -0.08 11.81 16 10 O -0.58 -15.95 12.83 5.55 0.07 -15.88 16 11 N -0.45 -11.78 3.01 -122.19 -0.37 -12.14 16 12 C 0.11 2.65 8.45 59.84 0.51 3.16 16 13 C -0.30 -8.65 9.23 -14.93 -0.14 -8.79 16 14 H 0.10 2.87 7.46 -52.49 -0.39 2.48 16 15 C 0.03 0.77 5.06 -17.47 -0.09 0.69 16 16 N -0.88 -24.12 10.81 55.50 0.60 -23.52 16 17 Si 0.92 21.12 29.57 -169.99 -5.03 16.09 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.35 7.30 -51.93 -0.38 0.98 16 27 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.73 8.03 -51.93 -0.42 1.31 16 30 H 0.05 1.18 7.86 -51.93 -0.41 0.77 16 31 H 0.02 0.48 6.23 -51.93 -0.32 0.15 16 32 H 0.07 1.79 6.75 -51.93 -0.35 1.44 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -30.19 270.44 -6.67 -36.85 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.06 Total: 1.89 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.96 Total: -7.36 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.23 Total: -35.67 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.07 Total: -15.88 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.19 -6.67 -36.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.086 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds