Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54966 * 330.66944 * 4 3 2 6 6 C 1.53000 * 117.50235 * 116.37581 * 4 3 2 7 7 C 1.52998 * 117.50105 * 184.99943 * 4 3 2 8 8 H 1.09004 * 117.50517 * 145.02296 * 7 4 3 9 9 C 1.50705 * 117.49798 * 359.97438 * 7 4 3 10 10 O 1.21289 * 119.99926 * 0.02562 * 9 7 4 11 11 N 1.34771 * 119.99998 * 180.02562 * 9 7 4 12 12 C 1.46502 * 120.00365 * 0.02562 * 11 9 7 13 13 C 1.37099 * 120.00302 * 180.02562 * 11 9 7 14 14 H 1.08004 * 119.99526 * 25.14631 * 13 11 9 15 15 C 1.38946 * 120.00441 * 205.15216 * 13 11 9 16 16 N 1.31413 * 120.00111 * 11.74927 * 15 13 11 17 17 Si 1.86804 * 120.00042 * 191.75259 * 15 13 11 18 18 H 1.48503 * 109.47229 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47228 * 119.99703 * 17 15 13 20 20 H 1.48504 * 109.46715 * 239.99582 * 17 15 13 21 21 H 1.09005 * 109.46868 * 60.00217 * 1 2 3 22 22 H 1.09000 * 109.47311 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47618 * 300.00591 * 1 2 3 24 24 H 1.08993 * 109.47089 * 239.99516 * 2 1 3 25 25 H 1.09005 * 109.46868 * 119.99783 * 2 1 3 26 26 H 1.08997 * 109.47180 * 299.99352 * 3 2 1 27 27 H 1.09002 * 109.47324 * 59.99813 * 3 2 1 28 28 H 1.09001 * 117.50121 * 214.98270 * 6 4 3 29 29 H 1.09001 * 117.49390 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.47242 * 85.05530 * 12 11 9 31 31 H 1.09001 * 109.47307 * 205.05806 * 12 11 9 32 32 H 1.09000 * 109.46954 * 325.05725 * 12 11 9 33 33 H 0.96994 * 120.00166 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0399 0.5852 0.4827 6 6 4.2770 2.0452 -1.2150 7 6 4.2764 2.7945 0.1190 8 1 5.2113 2.8267 0.6786 9 6 3.4119 4.0243 0.2254 10 8 2.2036 3.9190 0.2157 11 7 3.9814 5.2412 0.3314 12 6 5.4408 5.3686 0.3426 13 6 3.1950 6.3600 0.4288 14 1 2.1917 6.2823 0.8209 15 6 3.6887 7.5937 0.0228 16 7 4.8081 7.6604 -0.6623 17 14 2.7613 9.1577 0.4512 18 1 1.5394 8.8134 1.2218 19 1 3.6308 10.0404 1.2695 20 1 2.3760 9.8625 -0.7979 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6768 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 5.2122 1.5844 -1.5330 29 1 3.6521 2.4422 -2.0150 30 1 5.8106 5.4010 -0.6823 31 1 5.7216 6.2863 0.8594 32 1 5.8763 4.5131 0.8589 33 1 5.1529 8.5217 -0.9454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379385844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -17.841049 kcal Electronic energy + Delta-G solvation = -14228.509401 eV Core-core repulsion = 11869.015646 eV Total energy + Delta-G solvation = -2359.493755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.03812 -36.41777 -34.38468 -33.46179 -31.50051 -27.10064 -26.33345 -24.78875 -22.59689 -21.48732 -20.25089 -18.15011 -16.83154 -16.25363 -14.89930 -14.63197 -14.25249 -14.05373 -13.52524 -13.27723 -12.65126 -12.20508 -11.88173 -11.68914 -11.56582 -11.30699 -11.21910 -10.87287 -10.77015 -10.58687 -10.49830 -10.28330 -10.23667 -9.53186 -9.30934 -8.95563 -8.12106 -7.57316 -6.27553 -3.84015 3.16855 3.27340 3.34376 3.73737 4.15336 4.49539 4.88444 5.05875 5.16425 5.37815 5.48998 5.55890 5.63230 5.65735 5.89953 5.92975 6.12610 6.15448 6.21547 6.32266 6.37705 6.46636 6.55843 6.59669 6.82636 6.92988 7.16396 7.26239 7.60584 8.21742 8.55812 9.25200 9.49628 10.08527 10.77543 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.007898 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.174403 B = 3544.406213 C = 4038.154893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.074 4.074 4 C -0.126 4.126 5 H 0.099 0.901 6 C -0.158 4.158 7 C -0.172 4.172 8 H 0.108 0.892 9 C 0.477 3.523 10 O -0.583 6.583 11 N -0.446 5.446 12 C 0.115 3.885 13 C -0.304 4.304 14 H 0.097 0.903 15 C 0.029 3.971 16 N -0.884 5.884 17 Si 0.925 3.075 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.282 1.282 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -9.619 0.907 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.112 4.112 4 C -0.145 4.145 5 H 0.117 0.883 6 C -0.195 4.195 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.265 3.735 10 O -0.468 6.468 11 N -0.164 5.164 12 C -0.029 4.029 13 C -0.432 4.432 14 H 0.115 0.885 15 C -0.174 4.174 16 N -0.523 5.523 17 Si 0.752 3.248 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.208 1.208 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.026 -9.468 0.831 9.505 hybrid contribution 0.043 0.962 0.073 0.965 sum 0.068 -8.507 0.904 8.555 Atomic orbital electron populations 1.21740 0.96364 1.00540 1.02058 1.21622 0.95525 0.98212 1.00890 1.21174 0.91504 0.94135 1.04348 1.22305 0.95972 0.94793 1.01413 0.88319 1.22949 1.02140 1.03066 0.91388 1.22306 1.01390 0.93247 1.02397 0.87360 1.19209 0.87801 0.83624 0.82867 1.90492 1.14501 1.85872 1.55891 1.43524 1.05664 1.04893 1.62320 1.21453 0.81251 0.99279 1.00941 1.19681 0.99199 0.84355 1.39930 0.88515 1.25351 0.96890 0.99632 0.95522 1.70003 1.21285 1.25688 1.35349 0.85884 0.79516 0.81157 0.78270 1.19261 1.20707 1.20785 0.92823 0.93556 0.92763 0.92769 0.92815 0.91342 0.90230 0.89057 0.88748 0.93195 0.90897 0.95686 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.72 5.89 -26.73 -0.16 -1.88 16 3 C -0.07 -1.31 3.75 -26.73 -0.10 -1.41 16 4 C -0.13 -2.11 5.74 -90.62 -0.52 -2.63 16 5 H 0.10 1.39 8.07 -51.93 -0.42 0.98 16 6 C -0.16 -2.66 9.88 -26.73 -0.26 -2.92 16 7 C -0.17 -3.34 5.30 -91.77 -0.49 -3.82 16 8 H 0.11 1.90 6.51 -51.93 -0.34 1.56 16 9 C 0.48 11.89 7.39 -10.99 -0.08 11.81 16 10 O -0.58 -15.95 12.83 5.55 0.07 -15.88 16 11 N -0.45 -11.77 3.01 -122.19 -0.37 -12.14 16 12 C 0.11 2.65 8.46 59.85 0.51 3.16 16 13 C -0.30 -8.66 9.23 -14.93 -0.14 -8.79 16 14 H 0.10 2.88 7.46 -52.48 -0.39 2.48 16 15 C 0.03 0.78 5.06 -17.47 -0.09 0.69 16 16 N -0.88 -24.13 10.83 55.50 0.60 -23.52 16 17 Si 0.92 21.12 29.57 -169.99 -5.03 16.09 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.36 7.30 -51.93 -0.38 0.98 16 27 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.73 8.03 -51.93 -0.42 1.31 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 31 H 0.07 1.77 6.78 -51.93 -0.35 1.42 16 32 H 0.02 0.48 6.22 -51.93 -0.32 0.16 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -30.20 270.46 -6.66 -36.86 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.06 Total: 1.88 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.96 Total: -7.37 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.23 Total: -35.66 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.07 Total: -15.88 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.20 -6.66 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.021 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds