Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54966 * 330.66944 * 4 3 2 6 6 C 1.53000 * 117.50235 * 116.37581 * 4 3 2 7 7 C 1.52998 * 117.50105 * 184.99943 * 4 3 2 8 8 H 1.09004 * 117.50517 * 145.02296 * 7 4 3 9 9 C 1.50705 * 117.49798 * 359.97438 * 7 4 3 10 10 O 1.21289 * 119.99926 * 0.02562 * 9 7 4 11 11 N 1.34771 * 119.99998 * 180.02562 * 9 7 4 12 12 C 1.46502 * 120.00365 * 0.02562 * 11 9 7 13 13 C 1.37099 * 120.00302 * 180.02562 * 11 9 7 14 14 H 1.08004 * 119.99526 * 25.14631 * 13 11 9 15 15 C 1.38946 * 120.00441 * 205.15216 * 13 11 9 16 16 N 1.31413 * 120.00111 * 11.74927 * 15 13 11 17 17 Si 1.86804 * 120.00042 * 191.75259 * 15 13 11 18 18 H 1.48503 * 109.47229 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47228 * 119.99703 * 17 15 13 20 20 H 1.48504 * 109.46715 * 239.99582 * 17 15 13 21 21 H 1.09005 * 109.46868 * 60.00217 * 1 2 3 22 22 H 1.09000 * 109.47311 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47618 * 300.00591 * 1 2 3 24 24 H 1.08993 * 109.47089 * 239.99516 * 2 1 3 25 25 H 1.09005 * 109.46868 * 119.99783 * 2 1 3 26 26 H 1.08997 * 109.47180 * 299.99352 * 3 2 1 27 27 H 1.09002 * 109.47324 * 59.99813 * 3 2 1 28 28 H 1.09001 * 117.50121 * 214.98270 * 6 4 3 29 29 H 1.09001 * 117.49390 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.47242 * 85.05530 * 12 11 9 31 31 H 1.09001 * 109.47307 * 205.05806 * 12 11 9 32 32 H 1.09000 * 109.46954 * 325.05725 * 12 11 9 33 33 H 0.96994 * 120.00166 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0399 0.5852 0.4827 6 6 4.2770 2.0452 -1.2150 7 6 4.2764 2.7945 0.1190 8 1 5.2113 2.8267 0.6786 9 6 3.4119 4.0243 0.2254 10 8 2.2036 3.9190 0.2157 11 7 3.9814 5.2412 0.3314 12 6 5.4408 5.3686 0.3426 13 6 3.1950 6.3600 0.4288 14 1 2.1917 6.2823 0.8209 15 6 3.6887 7.5937 0.0228 16 7 4.8081 7.6604 -0.6623 17 14 2.7613 9.1577 0.4512 18 1 1.5394 8.8134 1.2218 19 1 3.6308 10.0404 1.2695 20 1 2.3760 9.8625 -0.7979 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6768 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 5.2122 1.5844 -1.5330 29 1 3.6521 2.4422 -2.0150 30 1 5.8106 5.4010 -0.6823 31 1 5.7216 6.2863 0.8594 32 1 5.8763 4.5131 0.8589 33 1 5.1529 8.5217 -0.9454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379385844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -35.604233 kcal Electronic energy + Delta-G solvation = -14229.279670 eV Core-core repulsion = 11869.015646 eV Total energy + Delta-G solvation = -2360.264025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79948 -38.05717 -36.36229 -34.71433 -33.55129 -28.62849 -28.08906 -26.66500 -24.32493 -22.68733 -21.62869 -19.93579 -18.87091 -18.03171 -16.60565 -16.20686 -15.95131 -15.73046 -15.20243 -14.83821 -13.97415 -13.86193 -13.45062 -13.36027 -13.24497 -13.04317 -12.88186 -12.66769 -12.37135 -12.16102 -11.97440 -11.85124 -11.62655 -11.05636 -10.88430 -10.73666 -10.04866 -9.61876 -8.34080 -5.99524 1.34282 1.38686 1.53012 1.95589 2.26675 2.88775 3.06089 3.23357 3.73039 4.03067 4.11259 4.26160 4.28683 4.40782 4.43627 4.68065 4.74972 4.87585 4.97451 4.97962 5.07132 5.11784 5.14589 5.22796 5.36539 5.42559 5.43861 5.49976 5.75464 6.12357 6.51357 7.18664 7.50350 8.09378 8.69514 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.007898 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.174403 B = 3544.406213 C = 4038.154893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.072 4.072 4 C -0.112 4.112 5 H 0.141 0.859 6 C -0.142 4.142 7 C -0.194 4.194 8 H 0.134 0.866 9 C 0.464 3.536 10 O -0.620 6.620 11 N -0.466 5.466 12 C 0.126 3.874 13 C -0.343 4.343 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.899 5.899 17 Si 0.990 3.010 18 H -0.274 1.274 19 H -0.264 1.264 20 H -0.276 1.276 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -11.047 0.982 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.110 4.110 4 C -0.130 4.130 5 H 0.158 0.842 6 C -0.180 4.180 7 C -0.215 4.215 8 H 0.152 0.848 9 C 0.254 3.746 10 O -0.508 6.508 11 N -0.185 5.185 12 C -0.017 4.017 13 C -0.471 4.471 14 H 0.086 0.914 15 C -0.206 4.206 16 N -0.538 5.538 17 Si 0.813 3.187 18 H -0.199 1.199 19 H -0.188 1.188 20 H -0.201 1.201 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.277 -10.904 0.902 11.016 hybrid contribution -0.376 1.382 0.021 1.433 sum 0.901 -9.522 0.922 9.609 Atomic orbital electron populations 1.21761 0.96131 1.01945 1.01045 1.21561 0.95787 0.95402 1.02612 1.21052 0.92759 0.96221 1.00971 1.22522 0.95092 0.94292 1.01124 0.84182 1.23053 1.03471 1.01584 0.89852 1.22253 1.01980 0.91779 1.05458 0.84789 1.20249 0.88173 0.84931 0.81213 1.90468 1.16554 1.86730 1.57020 1.43814 1.06785 1.04990 1.62884 1.21379 0.79636 1.00198 1.00526 1.19625 0.99034 0.86325 1.42099 0.91377 1.26113 0.97743 1.01982 0.94787 1.70071 1.21915 1.26785 1.35058 0.84938 0.78224 0.77315 0.78211 1.19908 1.18838 1.20123 0.93904 0.90855 0.93855 0.91027 0.90857 0.94794 0.93743 0.84858 0.91120 0.94245 0.92648 0.91631 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.91 71.98 0.71 -3.04 16 2 C -0.12 -2.95 5.89 30.59 0.18 -2.77 16 3 C -0.07 -2.54 3.75 30.59 0.11 -2.43 16 4 C -0.11 -3.46 5.74 -10.80 -0.06 -3.52 16 5 H 0.14 3.24 8.07 -2.39 -0.02 3.22 16 6 C -0.14 -4.44 9.88 30.59 0.30 -4.13 16 7 C -0.19 -7.20 5.30 -11.54 -0.06 -7.26 16 8 H 0.13 4.25 6.51 -2.39 -0.02 4.23 16 9 C 0.46 23.70 7.39 87.66 0.65 24.35 16 10 O -0.62 -35.73 12.83 -3.06 -0.04 -35.77 16 11 N -0.47 -25.21 3.01 -658.89 -1.98 -27.19 16 12 C 0.13 5.78 8.46 127.77 1.08 6.86 16 13 C -0.34 -20.28 9.23 84.04 0.78 -19.51 16 14 H 0.07 4.30 7.46 -2.91 -0.02 4.28 16 15 C -0.01 -0.28 5.06 84.93 0.43 0.15 16 16 N -0.90 -49.29 10.83 21.66 0.23 -49.06 16 17 Si 0.99 43.77 29.57 68.60 2.03 45.80 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.03 1.39 7.30 -2.39 -0.02 1.37 16 27 H 0.04 1.86 6.92 -2.39 -0.02 1.84 16 28 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.07 2.55 8.03 -2.39 -0.02 2.53 16 30 H 0.04 1.86 7.85 -2.39 -0.02 1.84 16 31 H 0.05 2.69 6.78 -2.39 -0.02 2.68 16 32 H 0.07 2.42 6.22 -2.39 -0.01 2.40 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -68.49 270.46 5.44 -63.05 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.07 Total: 14.47 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.12 Total: -11.31 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.75 Total: -76.25 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.04 Total: -35.77 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.49 5.44 -63.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.448 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds