Wall clock time and date at job start Mon Mar 30 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47334 * 2 1 4 4 C 1.53002 * 109.46856 * 120.00102 * 2 1 3 5 5 N 1.46503 * 109.46921 * 239.99959 * 2 1 3 6 6 C 1.37094 * 120.00123 * 104.21618 * 5 2 1 7 7 H 1.07995 * 120.00094 * 227.06678 * 6 5 2 8 8 C 1.38952 * 119.99935 * 47.06668 * 6 5 2 9 9 N 1.31410 * 119.99797 * 52.48968 * 8 6 5 10 10 Si 1.86798 * 120.00175 * 232.49231 * 8 6 5 11 11 H 1.48504 * 109.47045 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47286 * 119.99935 * 10 8 6 13 13 H 1.48499 * 109.46962 * 240.00243 * 10 8 6 14 14 C 1.34781 * 119.99827 * 284.21604 * 5 2 1 15 15 O 1.21293 * 119.99677 * 188.82506 * 14 5 2 16 16 C 1.50700 * 120.00172 * 8.82509 * 14 5 2 17 17 C 1.52999 * 117.49692 * 256.91937 * 16 14 5 18 18 C 1.52999 * 117.49821 * 188.25873 * 16 14 5 19 19 H 1.09001 * 109.47161 * 136.49318 * 1 2 3 20 20 H 1.08995 * 109.46803 * 256.49958 * 1 2 3 21 21 H 1.09002 * 109.46939 * 16.49529 * 1 2 3 22 22 H 1.09003 * 109.47022 * 180.30090 * 3 2 1 23 23 H 1.08994 * 109.47136 * 300.30074 * 3 2 1 24 24 H 1.09001 * 109.46704 * 60.30173 * 3 2 1 25 25 H 1.08999 * 109.47345 * 329.34234 * 4 2 1 26 26 H 1.08999 * 109.47288 * 89.34309 * 4 2 1 27 27 H 1.08997 * 109.46956 * 209.33833 * 4 2 1 28 28 H 0.96999 * 120.00049 * 184.73987 * 9 8 6 29 29 H 1.08998 * 115.54690 * 42.58737 * 16 14 5 30 30 H 1.08994 * 117.49999 * 359.97438 * 17 16 14 31 31 H 1.09003 * 117.49745 * 145.02294 * 17 16 14 32 32 H 1.09007 * 117.49791 * 214.97962 * 18 16 14 33 33 H 1.09001 * 117.49974 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 2.0184 -0.6906 -1.1962 6 6 2.5217 0.0315 -2.2472 7 1 2.2043 -0.1896 -3.2555 8 6 3.4403 1.0479 -2.0151 9 7 4.5217 0.8074 -1.3082 10 14 3.1382 2.7561 -2.7080 11 1 1.8589 2.7653 -3.4620 12 1 3.0642 3.7359 -1.5946 13 1 4.2516 3.1249 -3.6188 14 6 1.9727 -2.0360 -1.2634 15 8 2.5192 -2.6164 -2.1775 16 6 1.2426 -2.8191 -0.2028 17 6 2.0862 -3.5213 0.8631 18 6 1.3875 -4.3421 -0.2239 19 1 -0.3633 -0.7454 -0.7075 20 1 -0.3633 -0.2399 0.9992 21 1 -0.3633 0.9854 -0.2918 22 1 3.1301 1.4424 -0.0054 23 1 1.6724 1.9578 -0.8872 24 1 1.6812 1.9547 0.8927 25 1 1.3276 -0.5861 2.0631 26 1 2.1500 -1.7845 1.0355 27 1 3.0057 -0.3072 1.5391 28 1 5.1281 1.5316 -1.0879 29 1 0.2810 -2.4092 0.1058 30 1 3.1691 -3.4172 0.7970 31 1 1.6792 -3.5738 1.8729 32 1 0.5212 -4.9342 0.0714 33 1 2.0105 -4.7777 -1.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379392467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:32 Heat of formation + Delta-G solvation = 13.305392 kcal Electronic energy + Delta-G solvation = -15308.272987 eV Core-core repulsion = 12950.129843 eV Total energy + Delta-G solvation = -2358.143144 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30545 -38.16675 -37.03810 -34.69414 -32.61840 -28.88584 -28.07015 -26.61906 -24.59729 -23.36695 -21.65828 -20.16853 -18.62644 -17.55686 -17.04568 -16.15572 -15.97598 -15.39584 -14.81480 -14.68532 -14.47514 -13.97691 -13.74543 -13.49024 -13.11340 -13.01453 -12.48540 -12.43490 -12.37478 -12.15405 -12.07113 -11.87422 -11.53889 -11.28720 -10.46274 -10.39773 -10.01874 -9.46026 -8.47794 -5.95079 1.27553 1.39332 1.51530 1.96521 2.27963 2.58728 2.99557 3.18876 3.88572 3.95395 4.09408 4.13514 4.25867 4.41121 4.49256 4.69549 4.80625 4.88154 4.93314 4.97705 5.05172 5.14338 5.17445 5.23583 5.30794 5.38285 5.49161 5.66356 5.72388 6.28228 6.64702 7.27221 7.55746 8.23708 8.46873 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.039759 B = 0.013028 C = 0.011631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.074732 B = 2148.759724 C = 2406.755171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 C -0.161 4.161 4 C -0.198 4.198 5 N -0.438 5.438 6 C -0.406 4.406 7 H 0.046 0.954 8 C 0.077 3.923 9 N -0.832 5.832 10 Si 0.919 3.081 11 H -0.263 1.263 12 H -0.251 1.251 13 H -0.289 1.289 14 C 0.465 3.535 15 O -0.636 6.636 16 C -0.188 4.188 17 C -0.142 4.142 18 C -0.155 4.155 19 H 0.047 0.953 20 H 0.092 0.908 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.031 0.969 28 H 0.274 0.726 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 -0.487 9.805 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 C -0.218 4.218 4 C -0.255 4.255 5 N -0.157 5.157 6 C -0.530 4.530 7 H 0.063 0.937 8 C -0.134 4.134 9 N -0.464 5.464 10 Si 0.740 3.260 11 H -0.187 1.187 12 H -0.175 1.175 13 H -0.215 1.215 14 C 0.256 3.744 15 O -0.524 6.524 16 C -0.209 4.209 17 C -0.180 4.180 18 C -0.192 4.192 19 H 0.066 0.934 20 H 0.111 0.889 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.557 -0.677 9.413 12.090 hybrid contribution 0.488 0.958 -0.935 1.425 sum -7.069 0.280 8.477 11.041 Atomic orbital electron populations 1.22460 0.93566 1.02129 1.02867 1.20634 0.94249 0.92744 0.85395 1.22644 1.03357 0.95380 1.00443 1.23292 1.00774 1.04959 0.96439 1.43888 1.53292 1.02943 1.15605 1.18687 1.27472 1.18394 0.88428 0.93673 1.25800 0.89930 1.03070 0.94627 1.70716 1.05579 1.33452 1.36650 0.86299 0.78996 0.81293 0.79391 1.18742 1.17469 1.21543 1.20637 0.82787 0.83747 0.87271 1.90449 1.51524 1.70365 1.40056 1.22455 1.02315 0.95705 1.00378 1.22923 0.98140 1.01123 0.95779 1.23172 1.03658 0.91733 1.00678 0.93435 0.88950 0.92213 0.91478 0.93386 0.90945 0.89036 0.87682 0.94988 0.91515 0.83889 0.90881 0.83752 0.84679 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 8.30 71.98 0.60 -4.30 16 2 C 0.15 6.26 0.96 3.61 0.00 6.27 16 3 C -0.16 -6.66 5.94 71.98 0.43 -6.24 16 4 C -0.20 -6.90 8.54 71.98 0.61 -6.29 16 5 N -0.44 -22.84 2.46 -591.63 -1.45 -24.29 16 6 C -0.41 -23.95 8.09 84.04 0.68 -23.27 16 7 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 8 C 0.08 4.18 2.82 84.93 0.24 4.42 16 9 N -0.83 -46.70 12.32 21.66 0.27 -46.43 16 10 Si 0.92 41.09 26.57 68.60 1.82 42.92 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 14 C 0.46 24.31 6.63 87.66 0.58 24.89 16 15 O -0.64 -40.05 16.28 -3.07 -0.05 -40.10 16 16 C -0.19 -6.87 3.72 -11.54 -0.04 -6.92 16 17 C -0.14 -4.26 7.59 30.62 0.23 -4.02 16 18 C -0.16 -4.87 10.05 30.62 0.31 -4.56 16 19 H 0.05 1.62 6.60 -2.39 -0.02 1.61 16 20 H 0.09 2.19 7.20 -2.39 -0.02 2.17 16 21 H 0.06 1.84 7.67 -2.39 -0.02 1.82 16 22 H 0.07 3.15 4.81 -2.39 -0.01 3.14 16 23 H 0.05 2.06 4.56 -2.39 -0.01 2.05 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 25 H 0.09 2.35 7.33 -2.39 -0.02 2.33 16 26 H 0.11 3.66 1.45 -10.70 -0.02 3.64 16 27 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 28 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.14 4.36 5.87 -2.39 -0.01 4.35 16 30 H 0.07 2.57 8.11 -2.39 -0.02 2.56 16 31 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.14 3.03 8.14 -2.38 -0.02 3.01 16 33 H 0.07 2.71 7.69 -2.39 -0.02 2.69 16 Total: -1.00 -73.95 251.50 5.32 -68.63 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.09 Total: 19.29 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.64 Total: -20.02 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.19 Total: -70.72 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.05 Total: -40.10 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.82 Total: 42.92 kcal Total: -73.95 5.32 -68.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379392467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.940 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds