Wall clock time and date at job start Mon Mar 30 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46876 * 2 1 4 4 H 1.09006 * 115.56121 * 330.68478 * 3 2 1 5 5 C 1.53070 * 117.49371 * 116.40049 * 3 2 1 6 6 C 1.52992 * 59.98574 * 107.48431 * 5 3 2 7 7 H 1.09006 * 117.49911 * 252.49554 * 6 5 3 8 8 N 1.46506 * 117.50291 * 107.50132 * 6 5 3 9 9 C 1.34777 * 120.00000 * 136.24797 * 8 6 5 10 10 O 1.21274 * 120.00145 * 0.02562 * 9 8 6 11 11 C 1.50696 * 119.99735 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46973 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47348 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47587 * 300.00519 * 1 2 3 23 23 H 1.09002 * 109.47308 * 60.00116 * 1 2 3 24 24 H 1.09000 * 109.47017 * 240.00224 * 2 1 3 25 25 H 1.08998 * 109.46885 * 119.99615 * 2 1 3 26 26 H 1.08994 * 117.49528 * 359.97438 * 5 3 2 27 27 H 1.09005 * 117.52897 * 214.95220 * 5 3 2 28 28 H 0.96996 * 120.00113 * 316.25368 * 8 6 5 29 29 H 1.09000 * 109.47333 * 60.00571 * 11 9 8 30 30 H 1.09002 * 109.47152 * 300.00044 * 11 9 8 31 31 H 1.09001 * 109.47671 * 60.00215 * 12 11 9 32 32 H 1.09006 * 109.47297 * 299.99934 * 12 11 9 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1717 -0.4815 5 6 2.8447 1.9075 1.2162 6 6 3.5500 1.6580 -0.1183 7 1 4.1803 0.7720 -0.1965 8 7 4.0096 2.8285 -0.8699 9 6 5.2319 2.8274 -1.4378 10 8 5.9512 1.8573 -1.3269 11 6 5.7047 4.0317 -2.2105 12 6 7.1137 3.7722 -2.7473 13 6 7.5870 4.9767 -3.5195 14 1 6.9465 5.8408 -3.6179 15 6 8.8374 4.9757 -4.1003 16 7 9.6170 3.9233 -3.9809 17 14 9.4235 6.4685 -5.0580 18 1 9.0341 6.3261 -6.4840 19 1 8.8013 7.6936 -4.4948 20 1 10.9015 6.5726 -4.9567 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0101 1.1858 2.0160 27 1 2.7228 2.9427 1.5351 28 1 3.4342 3.6043 -0.9589 29 1 5.7203 4.9016 -1.5538 30 1 5.0273 4.2176 -3.0439 31 1 7.0979 2.9024 -3.4041 32 1 7.7915 3.5860 -1.9141 33 1 9.3124 3.1480 -3.4839 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379417632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:49 Heat of formation + Delta-G solvation = -68.129873 kcal Electronic energy + Delta-G solvation = -13391.507212 eV Core-core repulsion = 11029.832769 eV Total energy + Delta-G solvation = -2361.674442 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93209 -38.79207 -35.95441 -34.73879 -32.99001 -32.00087 -27.38345 -24.83094 -24.37847 -22.58776 -21.80761 -21.06714 -19.05585 -17.81763 -17.48207 -16.57604 -15.68753 -15.58827 -15.39645 -15.24507 -14.52725 -14.17838 -13.75612 -13.57831 -13.46024 -12.97455 -12.68794 -12.19081 -12.11684 -12.06882 -12.04688 -11.96962 -11.85692 -11.13632 -10.92937 -10.64800 -10.56149 -9.70755 -8.70284 -6.42220 1.52946 1.54402 1.65259 1.82083 2.07589 2.59978 2.86885 3.16504 3.67840 3.81204 3.89644 3.99672 4.24666 4.30577 4.38272 4.46874 4.55566 4.76752 4.80788 4.90136 4.97122 5.14688 5.18410 5.25122 5.27395 5.35573 5.44344 5.52776 5.92586 6.16755 6.48540 6.52600 7.23188 7.44156 8.69679 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.080141 B = 0.004695 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.300061 B = 5962.991777 C = 6042.507602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.137 4.137 4 H 0.121 0.879 5 C -0.173 4.173 6 C 0.046 3.954 7 H 0.105 0.895 8 N -0.689 5.689 9 C 0.513 3.487 10 O -0.591 6.591 11 C -0.112 4.112 12 C 0.025 3.975 13 C -0.619 4.619 14 H 0.068 0.932 15 C -0.047 4.047 16 N -0.940 5.940 17 Si 1.128 2.872 18 H -0.271 1.271 19 H -0.260 1.260 20 H -0.286 1.286 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.417 0.583 29 H 0.106 0.894 30 H 0.105 0.895 31 H -0.021 1.021 32 H -0.021 1.021 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.992 -1.409 8.718 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.157 4.157 4 H 0.139 0.861 5 C -0.211 4.211 6 C -0.060 4.060 7 H 0.123 0.877 8 N -0.340 5.340 9 C 0.302 3.698 10 O -0.471 6.471 11 C -0.152 4.152 12 C -0.013 4.013 13 C -0.657 4.657 14 H 0.086 0.914 15 C -0.243 4.243 16 N -0.578 5.578 17 Si 0.948 3.052 18 H -0.197 1.197 19 H -0.184 1.184 20 H -0.212 1.212 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.255 0.745 29 H 0.124 0.876 30 H 0.124 0.876 31 H -0.003 1.003 32 H -0.002 1.002 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.237 -1.492 7.940 19.947 hybrid contribution -1.069 -0.808 0.895 1.611 sum -19.306 -2.300 8.835 21.356 Atomic orbital electron populations 1.21712 0.93948 1.02234 1.02295 1.21167 0.97156 0.93111 1.02093 1.22988 0.91649 0.99545 1.01499 0.86142 1.23698 1.02138 1.03788 0.91467 1.21757 0.95428 0.90922 0.97857 0.87658 1.45276 1.16443 1.18800 1.53452 1.21318 0.81081 0.89150 0.78250 1.90633 1.56551 1.37918 1.62031 1.21515 0.98226 0.95309 1.00140 1.18881 0.92531 0.95663 0.94183 1.22528 1.04135 1.02555 1.36448 0.91378 1.27705 0.94220 1.04594 0.97784 1.70870 1.39733 1.05968 1.41182 0.82825 0.75695 0.71333 0.75337 1.19652 1.18412 1.21215 0.92031 0.91876 0.92535 0.92434 0.91225 0.87253 0.87254 0.74506 0.87624 0.87637 1.00265 1.00249 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.87 71.98 0.71 -1.06 16 2 C -0.10 -1.55 6.22 30.59 0.19 -1.36 16 3 C -0.14 -2.39 5.66 -10.77 -0.06 -2.45 16 4 H 0.12 1.77 8.08 -2.38 -0.02 1.75 16 5 C -0.17 -3.07 10.11 30.62 0.31 -2.76 16 6 C 0.05 1.17 6.15 44.99 0.28 1.45 16 7 H 0.11 3.31 7.40 -2.38 -0.02 3.30 16 8 N -0.69 -19.19 5.57 -442.54 -2.46 -21.66 16 9 C 0.51 20.38 7.83 87.66 0.69 21.07 16 10 O -0.59 -29.71 15.55 -3.01 -0.05 -29.76 16 11 C -0.11 -4.60 5.64 29.85 0.17 -4.43 16 12 C 0.03 1.41 3.57 29.85 0.11 1.52 16 13 C -0.62 -36.05 9.11 25.60 0.23 -35.81 16 14 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 15 C -0.05 -2.79 5.46 84.65 0.46 -2.33 16 16 N -0.94 -61.93 13.65 21.45 0.29 -61.63 16 17 Si 1.13 50.73 29.90 68.60 2.05 52.78 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.04 7.88 -2.39 -0.02 1.02 16 26 H 0.11 1.76 8.03 -2.39 -0.02 1.74 16 27 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.42 8.39 8.83 -92.71 -0.82 7.57 16 29 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 30 H 0.11 3.81 8.14 -2.39 -0.02 3.80 16 31 H -0.02 -1.32 7.97 -2.39 -0.02 -1.34 16 32 H -0.02 -1.31 7.97 -2.38 -0.02 -1.33 16 33 H 0.25 17.25 7.22 -92.71 -0.67 16.58 16 Total: -1.00 -77.09 283.70 3.28 -73.81 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.36 Total: 12.62 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.08 Total: -26.16 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.17 Total: -83.29 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -77.09 3.28 -73.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379417632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.678 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds