Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47490 * 2 1 4 4 C 1.50697 * 109.46853 * 239.99925 * 2 1 3 5 5 O 1.20761 * 120.00082 * 0.02562 * 4 2 1 6 6 N 1.46900 * 109.46782 * 120.00240 * 2 1 3 7 7 C 1.46905 * 111.00090 * 299.99517 * 6 2 1 8 8 C 1.50696 * 109.46872 * 200.26841 * 7 6 2 9 9 H 1.08004 * 120.00719 * 5.25458 * 8 7 6 10 10 C 1.37880 * 119.99483 * 185.25306 * 8 7 6 11 11 N 1.31508 * 120.00452 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99797 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47287 * 90.00064 * 12 10 8 14 14 H 1.48502 * 109.47145 * 210.00035 * 12 10 8 15 15 H 1.48501 * 109.46924 * 329.99898 * 12 10 8 16 16 C 1.46899 * 111.00300 * 63.95196 * 6 2 1 17 17 C 1.52999 * 117.49917 * 232.68083 * 16 6 2 18 18 C 1.52999 * 117.49894 * 164.05513 * 16 6 2 19 19 H 1.09002 * 109.46885 * 300.00350 * 1 2 3 20 20 H 1.08997 * 109.47070 * 59.99676 * 1 2 3 21 21 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47442 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47229 * 300.00226 * 3 2 1 24 24 H 1.09005 * 109.46921 * 59.99650 * 3 2 1 25 25 H 1.08004 * 120.00183 * 180.02562 * 4 2 1 26 26 H 1.08993 * 109.46718 * 80.26981 * 7 6 2 27 27 H 1.09000 * 109.46633 * 320.26836 * 7 6 2 28 28 H 0.96998 * 120.00364 * 180.02562 * 11 10 8 29 29 H 1.09006 * 115.54911 * 18.38560 * 16 6 2 30 30 H 1.08998 * 117.49651 * 359.97438 * 17 16 6 31 31 H 1.09001 * 117.49912 * 145.02150 * 17 16 6 32 32 H 1.09001 * 117.50067 * 214.97421 * 18 16 6 33 33 H 1.08999 * 117.49802 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.2475 -1.1690 -2.0256 6 7 2.0196 -0.6926 1.1994 7 6 1.5487 -0.0264 2.4211 8 6 2.4294 -0.4196 3.5790 9 1 3.3055 -1.0278 3.4090 10 6 2.1166 -0.0028 4.8555 11 7 1.0496 0.7374 5.0627 12 14 3.2087 -0.4895 6.2908 13 1 4.2636 0.5382 6.4810 14 1 2.3886 -0.5913 7.5246 15 1 3.8421 -1.8026 6.0078 16 6 1.6273 -2.1081 1.1870 17 6 0.9025 -2.6512 2.4202 18 6 2.3541 -3.0511 2.1481 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1301 1.4424 -0.0005 23 1 1.6768 1.9563 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.0942 -0.8095 -1.4012 26 1 0.5218 -0.3284 2.6267 27 1 1.5892 1.0542 2.2843 28 1 0.8298 1.0310 5.9607 29 1 1.3357 -2.5067 0.2153 30 1 0.7172 -1.9581 3.2408 31 1 0.1337 -3.4071 2.2599 32 1 2.5402 -4.0701 1.8088 33 1 3.1236 -2.6211 2.7892 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382482626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -11.108199 kcal Electronic energy + Delta-G solvation = -14852.857380 eV Core-core repulsion = 12493.655583 eV Total energy + Delta-G solvation = -2359.201797 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.18843 -39.17217 -36.10518 -34.76369 -31.44780 -28.93481 -28.22716 -25.99034 -23.89739 -22.93970 -21.77511 -19.66895 -18.83400 -17.56901 -16.69905 -16.63690 -16.14133 -15.96113 -14.98935 -14.48892 -14.38684 -13.96160 -13.74191 -13.62574 -13.07530 -12.88193 -12.73557 -12.66773 -12.38685 -12.27743 -11.88876 -11.73047 -11.38034 -11.09793 -10.91370 -10.50155 -10.39854 -8.85789 -8.11095 -6.16594 0.94982 1.44057 1.45583 1.54946 2.44765 2.96259 3.21907 3.31249 3.34811 3.95438 4.06912 4.14799 4.22641 4.45317 4.54473 4.60614 4.70576 4.77512 4.90430 4.94745 5.01773 5.13201 5.27095 5.31759 5.36902 5.45845 5.65456 5.82209 6.14402 6.29143 6.41198 6.66726 6.97411 7.49818 8.98424 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.010416 C = 0.009353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.792145 B = 2687.552288 C = 2992.815564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.032 3.968 3 C -0.130 4.130 4 C 0.379 3.621 5 O -0.490 6.490 6 N -0.485 5.485 7 C 0.201 3.799 8 C -0.500 4.500 9 H 0.068 0.932 10 C 0.006 3.994 11 N -0.934 5.934 12 Si 0.953 3.047 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.264 1.264 16 C 0.016 3.984 17 C -0.214 4.214 18 C -0.157 4.157 19 H 0.044 0.956 20 H 0.067 0.933 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.135 0.865 26 H -0.016 1.016 27 H 0.018 0.982 28 H 0.260 0.740 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -2.613 -8.547 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.059 4.059 3 C -0.188 4.188 4 C 0.236 3.764 5 O -0.361 6.361 6 N -0.210 5.210 7 C 0.076 3.924 8 C -0.538 4.538 9 H 0.086 0.914 10 C -0.191 4.191 11 N -0.575 5.575 12 Si 0.779 3.221 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.188 1.188 16 C -0.094 4.094 17 C -0.253 4.253 18 C -0.195 4.195 19 H 0.063 0.937 20 H 0.086 0.914 21 H 0.065 0.935 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.001 0.999 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.904 -2.733 -8.879 9.733 hybrid contribution -0.770 0.031 1.343 1.549 sum 2.134 -2.702 -7.535 8.285 Atomic orbital electron populations 1.22195 0.96378 1.01532 1.01576 1.22161 0.93980 0.97406 0.92328 1.21774 1.02759 0.91866 1.02353 1.26285 0.96142 0.71348 0.82658 1.90342 1.62267 1.37947 1.45580 1.62241 1.57040 1.00112 1.01561 1.19667 0.93342 0.93481 0.85910 1.21486 1.09973 1.30964 0.91406 0.91361 1.25689 0.96491 0.95576 1.01391 1.70067 1.27426 1.37885 1.22142 0.85624 0.78722 0.78997 0.78768 1.20299 1.21692 1.18848 1.22464 1.03954 0.89268 0.93692 1.23409 0.95937 1.04085 1.01852 1.23136 0.95199 0.98720 1.02400 0.93678 0.91410 0.93511 0.90165 0.90321 0.92877 0.84890 0.99874 0.96403 0.93140 0.87750 0.88993 0.89239 0.87488 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 7.22 71.98 0.52 -4.97 16 2 C 0.03 1.05 0.67 2.78 0.00 1.05 16 3 C -0.13 -3.86 8.30 71.98 0.60 -3.26 16 4 C 0.38 10.66 8.91 71.23 0.64 11.30 16 5 O -0.49 -16.04 16.74 -1.45 -0.02 -16.07 16 6 N -0.49 -19.05 4.44 -830.47 -3.69 -22.74 16 7 C 0.20 9.74 3.13 85.55 0.27 10.01 16 8 C -0.50 -26.02 6.63 25.60 0.17 -25.85 16 9 H 0.07 3.51 5.75 -2.91 -0.02 3.49 16 10 C 0.01 0.33 5.46 84.66 0.46 0.79 16 11 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16 12 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 15 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 16 C 0.02 0.58 4.56 44.91 0.20 0.78 16 17 C -0.21 -8.53 9.10 30.60 0.28 -8.25 16 18 C -0.16 -5.66 9.86 30.60 0.30 -5.36 16 19 H 0.04 1.74 6.89 -2.39 -0.02 1.73 16 20 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 21 H 0.05 1.68 7.13 -2.39 -0.02 1.67 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.86 6.04 -2.38 -0.01 1.84 16 25 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 26 H -0.02 -0.89 5.71 -2.39 -0.01 -0.90 16 27 H 0.02 0.93 5.53 -2.39 -0.01 0.92 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.10 3.59 6.62 -2.38 -0.02 3.57 16 30 H 0.09 4.49 4.99 -2.39 -0.01 4.48 16 31 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.09 3.70 5.65 -2.39 -0.01 3.68 16 Total: -1.00 -59.81 260.52 3.13 -56.68 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.10 Total: 14.55 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 3.44 Total: -23.76 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -3.40 Total: -76.39 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.02 Total: -16.07 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -59.81 3.13 -56.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382482626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.570 kcal (2) G-P(sol) polarization free energy of solvation -59.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds