Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.09001 * 115.54821 * 330.58364 * 5 4 2 7 7 C 1.52997 * 117.49742 * 116.25356 * 5 4 2 8 8 C 1.52997 * 117.50016 * 184.91570 * 5 4 2 9 9 H 1.09005 * 117.49880 * 145.02527 * 8 5 4 10 10 N 1.46499 * 117.50008 * 359.97438 * 8 5 4 11 11 C 1.34775 * 120.00007 * 155.00185 * 10 8 5 12 12 O 1.21683 * 120.00081 * 0.02562 * 11 10 8 13 13 C 1.46379 * 119.99917 * 180.02562 * 11 10 8 14 14 H 1.07992 * 119.99836 * 359.97438 * 13 11 10 15 15 C 1.40049 * 119.99808 * 179.97438 * 13 11 10 16 16 N 1.30668 * 120.00124 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99945 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47394 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47116 * 120.00124 * 17 15 13 20 20 H 1.48503 * 109.47319 * 240.00248 * 17 15 13 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 29 29 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 30 30 H 1.09009 * 117.49773 * 214.97885 * 7 5 4 31 31 H 1.09002 * 117.50224 * 359.97438 * 7 5 4 32 32 H 0.97001 * 120.00243 * 335.00278 * 10 8 5 33 33 H 0.97006 * 120.00344 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 4.0720 -0.0345 -0.6437 7 6 4.1695 -2.2344 -1.1126 8 6 4.2799 -1.4215 -2.4050 9 1 5.2579 -1.0137 -2.6609 10 7 3.4523 -1.8389 -3.5394 11 6 3.9802 -1.8831 -4.7786 12 8 5.1446 -1.5767 -4.9552 13 6 3.1531 -2.2996 -5.9122 14 1 2.1199 -2.5720 -5.7554 15 6 3.7016 -2.3450 -7.2000 16 7 4.9519 -2.0160 -7.3895 17 14 2.6462 -2.8773 -8.6464 18 1 1.2765 -3.1957 -8.1692 19 1 2.5798 -1.7774 -9.6419 20 1 3.2432 -4.0814 -9.2781 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6053 -1.7198 -1.2953 29 1 1.7516 -0.1582 -2.1370 30 1 5.0749 -2.3611 -0.5189 31 1 3.4810 -3.0795 -1.1062 32 1 2.5242 -2.0835 -3.3986 33 1 5.3317 -2.0471 -8.2816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385805854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -41.651369 kcal Electronic energy + Delta-G solvation = -13844.863344 eV Core-core repulsion = 11484.337096 eV Total energy + Delta-G solvation = -2360.526248 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.47871 -36.58808 -34.87907 -32.50773 -31.02749 -27.28572 -27.04763 -26.17106 -21.71274 -20.84563 -20.01321 -18.79557 -17.27586 -15.65622 -15.23007 -14.70782 -14.51562 -13.84916 -13.54745 -12.97037 -12.53388 -12.48731 -12.27431 -12.02849 -11.67758 -11.48504 -11.12553 -11.09663 -10.81343 -10.72105 -10.48285 -10.41114 -10.19969 -9.97383 -9.39361 -8.85059 -7.62894 -7.31008 -6.19620 -4.65090 3.12929 3.21078 3.25624 4.09606 4.28653 4.65133 4.71909 4.88516 5.01210 5.06299 5.46073 5.48205 5.60257 5.63914 5.68844 5.81725 5.86135 5.95844 5.97603 6.12642 6.16419 6.19400 6.26314 6.40329 6.52695 6.64515 6.67613 7.42834 7.91565 8.11519 8.33663 9.01618 9.52499 10.59251 10.77507 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.039801 B = 0.006740 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.324558 B = 4153.098953 C = 4550.468081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.081 4.081 5 C -0.178 4.178 6 H 0.102 0.898 7 C -0.208 4.208 8 C 0.117 3.883 9 H 0.124 0.876 10 N -0.734 5.734 11 C 0.555 3.445 12 O -0.580 6.580 13 C -0.544 4.544 14 H 0.068 0.932 15 C 0.087 3.913 16 N -0.767 5.767 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.381 0.619 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 2.521 11.473 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.119 4.119 5 C -0.198 4.198 6 H 0.120 0.880 7 C -0.248 4.248 8 C 0.008 3.992 9 H 0.142 0.858 10 N -0.385 5.385 11 C 0.360 3.640 12 O -0.462 6.462 13 C -0.581 4.581 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.733 3.267 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.201 1.201 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.213 0.787 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.321 2.768 11.155 13.117 hybrid contribution -0.948 -0.434 -0.496 1.155 sum -7.269 2.335 10.659 13.111 Atomic orbital electron populations 1.21849 0.95645 1.01534 1.01459 1.21069 0.95152 0.96297 0.98604 1.21883 1.01349 0.96021 1.01236 1.21121 0.93014 1.00197 0.97559 1.22852 0.95446 0.96624 1.04839 0.88044 1.23532 1.02742 0.94213 1.04303 1.21319 0.96951 0.99091 0.81824 0.85781 1.45635 1.13022 1.73333 1.06519 1.18262 0.87435 0.77597 0.80713 1.90588 1.18196 1.53478 1.83972 1.20906 0.97924 1.48177 0.91113 0.91367 1.25708 0.94751 0.93092 0.99687 1.70031 1.12519 1.34747 1.22291 0.86309 0.80695 0.78674 0.81041 1.18776 1.20136 1.20132 0.92652 0.92838 0.93128 0.91501 0.92682 0.93350 0.92383 0.92169 0.91338 0.89424 0.89381 0.78655 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.09 -1.06 2.92 -90.62 -0.26 -1.33 16 3 C -0.15 -1.63 9.01 37.16 0.33 -1.30 16 4 C -0.08 -1.12 3.88 -26.73 -0.10 -1.23 16 5 C -0.18 -2.73 5.52 -90.62 -0.50 -3.23 16 6 H 0.10 1.44 6.38 -51.93 -0.33 1.11 16 7 C -0.21 -3.34 10.11 -26.69 -0.27 -3.61 16 8 C 0.12 2.33 6.41 -67.89 -0.44 1.89 16 9 H 0.12 2.76 7.40 -51.93 -0.38 2.37 16 10 N -0.73 -16.78 5.34 -55.18 -0.29 -17.07 16 11 C 0.56 16.03 7.75 -12.99 -0.10 15.93 16 12 O -0.58 -18.99 14.59 5.20 0.08 -18.91 16 13 C -0.54 -15.51 9.54 -35.63 -0.34 -15.85 16 14 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 15 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 16 N -0.77 -23.17 11.83 55.55 0.66 -22.51 16 17 Si 0.91 20.21 29.56 -169.99 -5.02 15.18 16 18 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.65 6.41 -51.93 -0.33 0.32 16 28 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 32 H 0.38 7.77 7.81 -40.82 -0.32 7.45 16 33 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 277.54 15.07 4.18 4.18 Total: -1.00 -32.88 277.54 -6.95 -39.83 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.12 Total: 6.83 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.43 Total: -7.52 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.36 Total: -39.59 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.08 Total: -18.91 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.88 -6.95 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385805854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.823 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds