Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.09001 * 115.54821 * 330.58364 * 5 4 2 7 7 C 1.52997 * 117.49742 * 116.25356 * 5 4 2 8 8 C 1.52997 * 117.50016 * 184.91570 * 5 4 2 9 9 H 1.09005 * 117.49880 * 145.02527 * 8 5 4 10 10 N 1.46499 * 117.50008 * 359.97438 * 8 5 4 11 11 C 1.34775 * 120.00007 * 155.00185 * 10 8 5 12 12 O 1.21683 * 120.00081 * 0.02562 * 11 10 8 13 13 C 1.46379 * 119.99917 * 180.02562 * 11 10 8 14 14 H 1.07992 * 119.99836 * 359.97438 * 13 11 10 15 15 C 1.40049 * 119.99808 * 179.97438 * 13 11 10 16 16 N 1.30668 * 120.00124 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99945 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47394 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47116 * 120.00124 * 17 15 13 20 20 H 1.48503 * 109.47319 * 240.00248 * 17 15 13 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 29 29 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 30 30 H 1.09009 * 117.49773 * 214.97885 * 7 5 4 31 31 H 1.09002 * 117.50224 * 359.97438 * 7 5 4 32 32 H 0.97001 * 120.00243 * 335.00278 * 10 8 5 33 33 H 0.97006 * 120.00344 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 4.0720 -0.0345 -0.6437 7 6 4.1695 -2.2344 -1.1126 8 6 4.2799 -1.4215 -2.4050 9 1 5.2579 -1.0137 -2.6609 10 7 3.4523 -1.8389 -3.5394 11 6 3.9802 -1.8831 -4.7786 12 8 5.1446 -1.5767 -4.9552 13 6 3.1531 -2.2996 -5.9122 14 1 2.1199 -2.5720 -5.7554 15 6 3.7016 -2.3450 -7.2000 16 7 4.9519 -2.0160 -7.3895 17 14 2.6462 -2.8773 -8.6464 18 1 1.2765 -3.1957 -8.1692 19 1 2.5798 -1.7774 -9.6419 20 1 3.2432 -4.0814 -9.2781 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6053 -1.7198 -1.2953 29 1 1.7516 -0.1582 -2.1370 30 1 5.0749 -2.3611 -0.5189 31 1 3.4810 -3.0795 -1.1062 32 1 2.5242 -2.0835 -3.3986 33 1 5.3317 -2.0471 -8.2816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385805854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -63.708209 kcal Electronic energy + Delta-G solvation = -13845.819801 eV Core-core repulsion = 11484.337096 eV Total energy + Delta-G solvation = -2361.482704 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07347 -38.37568 -36.15013 -34.64834 -32.96188 -28.60247 -28.05593 -27.95671 -23.38691 -22.24439 -21.40721 -20.24492 -19.27537 -17.59156 -16.80159 -16.23699 -15.77709 -15.37250 -14.81605 -14.64552 -14.42366 -13.93751 -13.32040 -13.23614 -12.99848 -12.89029 -12.82217 -12.65262 -12.48176 -12.09919 -11.98724 -11.66031 -11.42223 -11.36055 -10.94440 -10.77014 -9.89382 -9.14913 -8.31057 -6.87634 1.39872 1.39974 1.58321 2.23825 2.41164 2.97444 3.04121 3.64712 3.70831 4.02682 4.07680 4.20132 4.32078 4.41134 4.49899 4.83032 4.88509 4.88920 4.95240 4.98531 5.06127 5.12314 5.17575 5.30325 5.31375 5.42336 5.53869 5.58175 5.86476 6.21022 6.31614 6.84745 7.52925 8.47728 8.65879 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.039801 B = 0.006740 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.324558 B = 4153.098953 C = 4550.468081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.144 4.144 6 H 0.118 0.882 7 C -0.183 4.183 8 C 0.063 3.937 9 H 0.090 0.910 10 N -0.721 5.721 11 C 0.538 3.462 12 O -0.633 6.633 13 C -0.573 4.573 14 H 0.087 0.913 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 1.000 3.000 18 H -0.246 1.246 19 H -0.268 1.268 20 H -0.268 1.268 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.394 0.606 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 2.055 12.468 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.119 4.119 5 C -0.163 4.163 6 H 0.136 0.864 7 C -0.222 4.222 8 C -0.044 4.044 9 H 0.108 0.892 10 N -0.373 5.373 11 C 0.343 3.657 12 O -0.520 6.520 13 C -0.609 4.609 14 H 0.106 0.894 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.819 3.181 18 H -0.169 1.169 19 H -0.193 1.193 20 H -0.192 1.192 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.228 0.772 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.536 2.303 12.222 15.085 hybrid contribution -0.246 -0.258 -0.696 0.782 sum -8.783 2.046 11.526 14.635 Atomic orbital electron populations 1.21835 0.94568 1.01985 1.01964 1.21037 0.96042 0.96141 0.97379 1.21898 1.01071 0.95943 1.01711 1.21157 0.91687 1.00675 0.98383 1.22937 0.96399 0.96850 1.00161 0.86428 1.23586 1.03612 0.94781 1.00247 1.21372 0.96467 1.03941 0.82635 0.89225 1.45183 1.13671 1.72535 1.05874 1.18658 0.86989 0.77360 0.82742 1.90536 1.20312 1.55903 1.85293 1.21447 0.98887 1.48645 0.91937 0.89440 1.27005 0.96160 0.92290 1.03261 1.70198 1.15198 1.36106 1.23681 0.84939 0.78842 0.78354 0.75938 1.16941 1.19258 1.19240 0.93238 0.92448 0.91586 0.90438 0.93592 0.91563 0.92823 0.91708 0.93006 0.87560 0.88433 0.77167 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.09 -1.76 2.92 -10.79 -0.03 -1.79 16 3 C -0.15 -2.95 9.01 71.98 0.65 -2.30 16 4 C -0.08 -2.10 3.88 30.59 0.12 -1.99 16 5 C -0.14 -4.20 5.52 -10.79 -0.06 -4.26 16 6 H 0.12 3.09 6.38 -2.39 -0.02 3.08 16 7 C -0.18 -5.56 10.11 30.62 0.31 -5.25 16 8 C 0.06 2.57 6.41 45.02 0.29 2.85 16 9 H 0.09 4.24 7.40 -2.38 -0.02 4.22 16 10 N -0.72 -33.73 5.34 -446.71 -2.38 -36.11 16 11 C 0.54 32.20 7.75 86.36 0.67 32.87 16 12 O -0.63 -43.72 14.59 -4.29 -0.06 -43.79 16 13 C -0.57 -33.10 9.54 24.83 0.24 -32.87 16 14 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.57 5.50 85.31 0.47 2.04 16 16 N -0.82 -51.19 11.83 21.84 0.26 -50.94 16 17 Si 1.00 41.32 29.56 68.60 2.03 43.35 16 18 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.10 6.41 -2.39 -0.02 1.08 16 28 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.10 2.81 8.03 -2.39 -0.02 2.79 16 32 H 0.39 16.06 7.81 -92.71 -0.72 15.34 16 33 H 0.28 15.40 8.29 -92.70 -0.77 14.64 16 Total: -1.00 -74.24 277.54 3.51 -70.73 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.36 Total: 29.38 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 3.31 Total: -12.63 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.13 Total: -87.05 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.06 Total: -43.79 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.24 3.51 -70.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385805854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.021 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds