Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52997 * 109.47606 * 2 1 4 4 C 1.53011 * 109.47072 * 119.99747 * 2 1 3 5 5 C 1.52996 * 109.47121 * 174.99757 * 4 2 1 6 6 H 1.09003 * 115.56508 * 330.69235 * 5 4 2 7 7 C 1.53003 * 117.49521 * 116.37740 * 5 4 2 8 8 C 1.53001 * 117.49919 * 185.00118 * 5 4 2 9 9 H 1.09002 * 117.51718 * 359.97438 * 8 5 4 10 10 N 1.46499 * 117.50077 * 145.02302 * 8 5 4 11 11 C 1.34774 * 119.99966 * 205.01415 * 10 8 5 12 12 O 1.21682 * 120.00105 * 359.97438 * 11 10 8 13 13 C 1.46377 * 119.99614 * 180.02562 * 11 10 8 14 14 H 1.07999 * 120.00329 * 359.97438 * 13 11 10 15 15 C 1.40055 * 119.99684 * 180.02562 * 13 11 10 16 16 N 1.30672 * 119.99965 * 359.72532 * 15 13 11 17 17 Si 1.86795 * 119.99987 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47273 * 59.99793 * 17 15 13 19 19 H 1.48495 * 109.47159 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99990 * 17 15 13 21 21 H 1.09007 * 109.47419 * 300.00204 * 1 2 3 22 22 H 1.09008 * 109.47040 * 60.00251 * 1 2 3 23 23 H 1.09004 * 109.47634 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47839 * 239.99918 * 2 1 3 25 25 H 1.09007 * 109.46898 * 59.99477 * 3 2 1 26 26 H 1.08995 * 109.47559 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47202 * 299.99946 * 3 2 1 28 28 H 1.08997 * 109.46546 * 55.00398 * 4 2 1 29 29 H 1.08993 * 109.46936 * 294.99892 * 4 2 1 30 30 H 1.08996 * 117.50390 * 0.02562 * 7 5 4 31 31 H 1.09004 * 117.51634 * 214.96826 * 7 5 4 32 32 H 0.97004 * 119.99469 * 25.01256 * 10 8 5 33 33 H 0.97000 * 120.00206 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8311 1.1881 6 1 3.9929 -0.8802 0.1869 7 6 4.3693 -0.1013 2.2655 8 6 4.2606 -1.6272 2.2939 9 1 3.6325 -2.0725 3.0654 10 7 5.4515 -2.3972 1.9260 11 6 5.8100 -3.4729 2.6546 12 8 5.1449 -3.8043 3.6182 13 6 7.0001 -4.2418 2.2873 14 1 7.5907 -3.9475 1.4324 15 6 7.3724 -5.3600 3.0441 16 7 6.6604 -5.7135 4.0811 17 14 8.8908 -6.3417 2.5751 18 1 10.0850 -5.4606 2.6255 19 1 9.0655 -7.4680 3.5269 20 1 8.7286 -6.8774 1.1995 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6053 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.8125 0.4567 3.0182 31 1 5.3271 0.3296 1.9735 32 1 5.9818 -2.1328 1.1581 33 1 6.9184 -6.4877 4.6055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385805856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -65.264301 kcal Electronic energy + Delta-G solvation = -13656.938871 eV Core-core repulsion = 11295.388689 eV Total energy + Delta-G solvation = -2361.550182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.98508 -38.43193 -36.18491 -34.64709 -33.03947 -28.69489 -27.93158 -27.83374 -23.37042 -21.94914 -21.47439 -20.79503 -19.16426 -17.51829 -16.88138 -16.12381 -15.86649 -15.04365 -14.86262 -14.73921 -14.42243 -14.00433 -13.53069 -13.08763 -12.91775 -12.83536 -12.74151 -12.65164 -12.36946 -12.14267 -12.06497 -11.74965 -11.50434 -11.38569 -10.91543 -10.83089 -9.89830 -9.14970 -8.30699 -6.87993 1.40028 1.43698 1.55776 2.24100 2.41166 2.93908 3.03237 3.63458 3.84274 3.93347 4.09044 4.20288 4.28376 4.38209 4.61313 4.80075 4.84963 4.87700 4.92708 4.98804 5.07707 5.12160 5.22142 5.29863 5.33742 5.42026 5.51573 5.57192 5.86165 6.20698 6.30544 6.84363 7.52505 8.47245 8.65517 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.065023 B = 0.005471 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.514778 B = 5116.569401 C = 5171.987945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.137 4.137 6 H 0.109 0.891 7 C -0.179 4.179 8 C 0.064 3.936 9 H 0.089 0.911 10 N -0.726 5.726 11 C 0.538 3.462 12 O -0.633 6.633 13 C -0.575 4.575 14 H 0.089 0.911 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 1.001 2.999 18 H -0.254 1.254 19 H -0.274 1.274 20 H -0.254 1.254 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.395 0.605 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 11.075 -9.363 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.119 4.119 5 C -0.157 4.157 6 H 0.127 0.873 7 C -0.218 4.218 8 C -0.043 4.043 9 H 0.107 0.893 10 N -0.377 5.377 11 C 0.342 3.658 12 O -0.520 6.520 13 C -0.611 4.611 14 H 0.107 0.893 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.820 3.180 18 H -0.178 1.178 19 H -0.198 1.198 20 H -0.178 1.178 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.229 0.771 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.246 10.717 -8.512 15.044 hybrid contribution 0.735 -0.470 -0.112 0.880 sum -5.510 10.247 -8.624 14.483 Atomic orbital electron populations 1.21836 0.94576 1.01697 1.02259 1.21083 0.96061 0.96752 0.97027 1.21811 1.01171 0.95136 1.01845 1.21241 0.91424 1.00130 0.99081 1.22823 0.95244 1.02847 0.94798 0.87302 1.23592 1.02094 0.94247 1.01880 1.21411 0.91347 0.90263 1.01291 0.89327 1.45257 1.28305 1.30729 1.33426 1.18654 0.85819 0.79548 0.81744 1.90535 1.57872 1.71596 1.32044 1.21415 1.10797 1.13107 1.15809 0.89318 1.27017 1.00895 0.97721 0.93076 1.70187 1.37712 1.22718 1.14537 0.85025 0.76592 0.77248 0.79127 1.17755 1.19822 1.17761 0.92486 0.91623 0.93138 0.91482 0.92677 0.92755 0.92046 0.92939 0.91437 0.87722 0.88361 0.77091 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.19 71.98 0.66 -1.88 16 2 C -0.09 -1.81 2.88 -10.79 -0.03 -1.84 16 3 C -0.14 -2.51 9.01 71.98 0.65 -1.86 16 4 C -0.08 -2.05 4.96 30.60 0.15 -1.90 16 5 C -0.14 -4.02 4.65 -10.79 -0.05 -4.07 16 6 H 0.11 2.98 8.08 -2.39 -0.02 2.97 16 7 C -0.18 -5.42 10.10 30.60 0.31 -5.11 16 8 C 0.06 2.60 6.15 44.99 0.28 2.88 16 9 H 0.09 4.23 7.40 -2.39 -0.02 4.21 16 10 N -0.73 -34.11 5.56 -446.82 -2.48 -36.59 16 11 C 0.54 32.28 7.75 86.36 0.67 32.95 16 12 O -0.63 -43.84 14.58 -4.29 -0.06 -43.90 16 13 C -0.57 -33.26 9.54 24.83 0.24 -33.02 16 14 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 15 C 0.03 1.59 5.50 85.31 0.47 2.06 16 16 N -0.82 -51.22 11.83 21.84 0.26 -50.96 16 17 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 18 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 22 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.05 1.01 7.38 -2.39 -0.02 1.00 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.63 7.87 -2.39 -0.02 1.61 16 30 H 0.10 2.85 8.03 -2.39 -0.02 2.83 16 31 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.40 15.96 8.81 -92.71 -0.82 15.15 16 33 H 0.28 15.50 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -74.44 281.43 3.35 -71.10 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.26 Total: 28.87 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.34 Total: -11.79 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.23 Total: -87.56 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.06 Total: -43.90 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -74.44 3.35 -71.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385805856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.834 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds