Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47456 * 2 1 4 4 H 1.08996 * 115.56089 * 29.31022 * 3 2 1 5 5 C 1.53001 * 117.49567 * 243.62010 * 3 2 1 6 6 C 1.53000 * 117.50014 * 174.99758 * 3 2 1 7 7 H 1.08993 * 117.52167 * 214.96704 * 6 3 2 8 8 C 1.50699 * 117.49726 * 359.97438 * 6 3 2 9 9 O 1.21282 * 120.00006 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00244 * 180.02562 * 8 6 3 11 11 C 1.46500 * 120.00366 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47175 * 34.99887 * 11 10 8 13 13 C 1.52997 * 109.47204 * 274.99782 * 11 10 8 14 14 C 1.50706 * 109.46953 * 154.99458 * 11 10 8 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 H 1.08999 * 109.46791 * 60.00114 * 1 2 3 23 23 H 1.08996 * 109.47508 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 300.00450 * 1 2 3 25 25 H 1.08995 * 109.46889 * 239.99361 * 2 1 3 26 26 H 1.08999 * 109.46791 * 119.99885 * 2 1 3 27 27 H 1.09001 * 117.49626 * 145.01911 * 5 3 2 28 28 H 1.09004 * 117.51983 * 359.97438 * 5 3 2 29 29 H 0.96998 * 119.99628 * 359.97438 * 10 8 6 30 30 H 1.09001 * 109.46922 * 179.97438 * 13 11 10 31 31 H 1.09000 * 109.47140 * 300.00127 * 13 11 10 32 32 H 1.09002 * 109.47045 * 60.00034 * 13 11 10 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8441 1.9074 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 3.8925 2.5287 0.6772 8 6 4.4213 0.4329 0.2266 9 8 3.9192 -0.6711 0.2173 10 7 5.7584 0.5641 0.3336 11 6 6.6053 -0.6267 0.4383 12 1 6.1807 -1.4288 -0.1654 13 6 6.6795 -1.0730 1.8998 14 6 7.9906 -0.3031 -0.0591 15 1 8.2176 0.6902 -0.4170 16 6 8.9685 -1.2752 -0.0563 17 7 10.1776 -0.9926 -0.4899 18 14 8.5762 -2.9932 0.5633 19 1 8.8472 -3.0674 2.0214 20 1 7.1446 -3.2957 0.3098 21 1 9.4248 -3.9820 -0.1489 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7214 2.9426 -1.5344 28 1 3.0102 1.1857 -2.0157 29 1 6.1600 1.4470 0.3406 30 1 7.3092 -1.9592 1.9776 31 1 7.1041 -0.2709 2.5036 32 1 5.6775 -1.3070 2.2596 33 1 10.8657 -1.6764 -0.4876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387538651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -22.980094 kcal Electronic energy + Delta-G solvation = -14131.996271 eV Core-core repulsion = 11772.279670 eV Total energy + Delta-G solvation = -2359.716601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61090 -36.78271 -34.75060 -32.44000 -31.82326 -29.83002 -25.22779 -24.23051 -23.60952 -20.98782 -20.20640 -19.41909 -17.08149 -16.06733 -15.58639 -15.04101 -14.37425 -13.98807 -13.80170 -13.43104 -12.93328 -12.73058 -12.18794 -12.09001 -12.07087 -11.56470 -11.27579 -11.21804 -10.91146 -10.77609 -10.18405 -10.02611 -9.81305 -9.65576 -9.21106 -8.86483 -8.74262 -8.09680 -6.20008 -4.22233 3.08373 3.24116 3.35879 3.40719 3.88757 4.12111 4.32616 4.74561 5.03849 5.10626 5.15092 5.31981 5.47013 5.52146 5.63433 5.77778 5.87835 6.08368 6.12613 6.23239 6.33265 6.40090 6.44817 6.58256 6.76228 6.88220 7.22577 7.34160 7.55093 8.19132 8.57918 8.78002 9.01391 9.41340 10.92282 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.051177 B = 0.007501 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.990798 B = 3732.054662 C = 4027.540107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.118 4.118 4 H 0.106 0.894 5 C -0.154 4.154 6 C -0.190 4.190 7 H 0.118 0.882 8 C 0.531 3.469 9 O -0.552 6.552 10 N -0.699 5.699 11 C 0.236 3.764 12 H 0.048 0.952 13 C -0.161 4.161 14 C -0.534 4.534 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.893 5.893 18 Si 0.886 3.114 19 H -0.276 1.276 20 H -0.262 1.262 21 H -0.294 1.294 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.395 0.605 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.132 5.096 1.625 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.137 4.137 4 H 0.124 0.876 5 C -0.191 4.191 6 C -0.211 4.211 7 H 0.136 0.864 8 C 0.317 3.683 9 O -0.432 6.432 10 N -0.346 5.346 11 C 0.133 3.867 12 H 0.065 0.935 13 C -0.219 4.219 14 C -0.572 4.572 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.187 1.187 21 H -0.222 1.222 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.228 0.772 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.258 4.218 1.582 14.953 hybrid contribution 0.373 -0.322 0.411 0.642 sum -13.886 3.896 1.993 14.559 Atomic orbital electron populations 1.21844 0.96846 1.01187 1.00994 1.21146 0.93559 0.93327 1.04208 1.22393 0.91113 0.99100 1.01099 0.87611 1.23037 1.02694 1.02443 0.90958 1.22356 0.95322 0.99582 1.03832 0.86441 1.19577 0.82898 0.89181 0.76688 1.90634 1.73651 1.27296 1.51620 1.46160 1.05483 1.11145 1.71821 1.19086 0.90427 0.84565 0.92631 0.93454 1.22446 0.99135 1.00464 0.99827 1.21060 0.92430 1.00022 1.43703 0.90228 1.24839 0.94668 0.98684 0.94405 1.69874 1.02473 1.34499 1.46190 0.86865 0.78924 0.84169 0.78452 1.20331 1.18679 1.22161 0.93223 0.92985 0.93275 0.91257 0.90255 0.88299 0.88318 0.77194 0.93523 0.92871 0.94555 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.87 37.16 0.37 -1.32 16 2 C -0.09 -1.21 4.47 -26.73 -0.12 -1.33 16 3 C -0.12 -1.51 5.74 -90.62 -0.52 -2.03 16 4 H 0.11 1.12 8.07 -51.93 -0.42 0.70 16 5 C -0.15 -1.92 9.88 -26.73 -0.26 -2.18 16 6 C -0.19 -2.71 6.19 -91.77 -0.57 -3.28 16 7 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 8 C 0.53 10.16 7.56 -10.99 -0.08 10.08 16 9 O -0.55 -12.18 12.77 5.56 0.07 -12.11 16 10 N -0.70 -14.20 5.07 -54.93 -0.28 -14.48 16 11 C 0.24 5.74 2.15 -69.08 -0.15 5.59 16 12 H 0.05 1.27 6.64 -51.93 -0.34 0.92 16 13 C -0.16 -3.66 8.96 37.16 0.33 -3.32 16 14 C -0.53 -14.64 9.31 -34.44 -0.32 -14.96 16 15 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 18 Si 0.89 22.03 24.37 -169.99 -4.14 17.89 16 19 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 20 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.11 7.30 -51.93 -0.38 0.73 16 26 H 0.08 1.31 6.92 -51.93 -0.36 0.95 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.35 8.03 -51.93 -0.42 0.94 16 29 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -30.67 268.31 -5.95 -36.62 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.00 Total: 4.61 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -1.42 Total: -10.65 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.50 Total: -40.40 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.67 -5.95 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387538651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.639 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds