Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47456 * 2 1 4 4 H 1.08996 * 115.56089 * 29.31022 * 3 2 1 5 5 C 1.53001 * 117.49567 * 243.62010 * 3 2 1 6 6 C 1.53000 * 117.50014 * 174.99758 * 3 2 1 7 7 H 1.08993 * 117.52167 * 214.96704 * 6 3 2 8 8 C 1.50699 * 117.49726 * 359.97438 * 6 3 2 9 9 O 1.21282 * 120.00006 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00244 * 180.02562 * 8 6 3 11 11 C 1.46500 * 120.00366 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47175 * 34.99887 * 11 10 8 13 13 C 1.52997 * 109.47204 * 274.99782 * 11 10 8 14 14 C 1.50706 * 109.46953 * 154.99458 * 11 10 8 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 H 1.08999 * 109.46791 * 60.00114 * 1 2 3 23 23 H 1.08996 * 109.47508 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 300.00450 * 1 2 3 25 25 H 1.08995 * 109.46889 * 239.99361 * 2 1 3 26 26 H 1.08999 * 109.46791 * 119.99885 * 2 1 3 27 27 H 1.09001 * 117.49626 * 145.01911 * 5 3 2 28 28 H 1.09004 * 117.51983 * 359.97438 * 5 3 2 29 29 H 0.96998 * 119.99628 * 359.97438 * 10 8 6 30 30 H 1.09001 * 109.46922 * 179.97438 * 13 11 10 31 31 H 1.09000 * 109.47140 * 300.00127 * 13 11 10 32 32 H 1.09002 * 109.47045 * 60.00034 * 13 11 10 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8441 1.9074 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 3.8925 2.5287 0.6772 8 6 4.4213 0.4329 0.2266 9 8 3.9192 -0.6711 0.2173 10 7 5.7584 0.5641 0.3336 11 6 6.6053 -0.6267 0.4383 12 1 6.1807 -1.4288 -0.1654 13 6 6.6795 -1.0730 1.8998 14 6 7.9906 -0.3031 -0.0591 15 1 8.2176 0.6902 -0.4170 16 6 8.9685 -1.2752 -0.0563 17 7 10.1776 -0.9926 -0.4899 18 14 8.5762 -2.9932 0.5633 19 1 8.8472 -3.0674 2.0214 20 1 7.1446 -3.2957 0.3098 21 1 9.4248 -3.9820 -0.1489 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7214 2.9426 -1.5344 28 1 3.0102 1.1857 -2.0157 29 1 6.1600 1.4470 0.3406 30 1 7.3092 -1.9592 1.9776 31 1 7.1041 -0.2709 2.5036 32 1 5.6775 -1.3070 2.2596 33 1 10.8657 -1.6764 -0.4876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387538651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = -43.922849 kcal Electronic energy + Delta-G solvation = -14132.904417 eV Core-core repulsion = 11772.279670 eV Total energy + Delta-G solvation = -2360.624747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04156 -38.13837 -36.50969 -34.41401 -32.97569 -31.61661 -27.26096 -25.63824 -24.61977 -22.51869 -21.54508 -20.98548 -18.89579 -17.65818 -17.42023 -16.32398 -16.03892 -15.38964 -15.02208 -15.00258 -14.83400 -14.15084 -14.01755 -13.72482 -13.21351 -13.08225 -12.88581 -12.71494 -12.20051 -12.16620 -11.89562 -11.61077 -11.30899 -11.09471 -10.91587 -10.88016 -10.36940 -9.83580 -8.40163 -6.45980 1.25201 1.33354 1.43056 1.67421 2.24246 2.45083 2.92405 2.97639 3.68604 3.91780 4.00948 4.21483 4.38840 4.44023 4.55629 4.55744 4.67866 4.70508 4.82562 4.90691 4.97696 5.07284 5.22100 5.27970 5.31812 5.37202 5.42095 5.63526 5.70929 6.13379 6.55746 6.91538 7.17935 7.49896 8.75245 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.051177 B = 0.007501 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.990798 B = 3732.054662 C = 4027.540107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.111 4.111 4 H 0.141 0.859 5 C -0.141 4.141 6 C -0.201 4.201 7 H 0.148 0.852 8 C 0.525 3.475 9 O -0.587 6.587 10 N -0.701 5.701 11 C 0.242 3.758 12 H 0.020 0.980 13 C -0.154 4.154 14 C -0.534 4.534 15 H 0.056 0.944 16 C 0.029 3.971 17 N -0.933 5.933 18 Si 0.940 3.060 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.291 1.291 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.406 0.594 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 6.163 2.366 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.129 4.129 4 H 0.158 0.842 5 C -0.179 4.179 6 C -0.222 4.222 7 H 0.166 0.834 8 C 0.313 3.687 9 O -0.468 6.468 10 N -0.349 5.349 11 C 0.137 3.863 12 H 0.038 0.962 13 C -0.212 4.212 14 C -0.572 4.572 15 H 0.074 0.926 16 C -0.171 4.171 17 N -0.572 5.572 18 Si 0.767 3.233 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.218 1.218 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.153 0.847 28 H 0.097 0.903 29 H 0.241 0.759 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.062 5.314 2.329 17.078 hybrid contribution 0.903 -0.619 0.118 1.101 sum -15.159 4.695 2.447 16.057 Atomic orbital electron populations 1.21778 0.94233 1.01655 1.02461 1.21058 0.95853 0.94063 1.01394 1.22560 0.90323 0.98733 1.01311 0.84160 1.23154 1.01029 1.03955 0.89715 1.22364 0.95434 0.98135 1.06229 0.83404 1.20449 0.82559 0.90521 0.75189 1.90627 1.74099 1.29300 1.52792 1.46040 1.05965 1.10460 1.72470 1.18734 0.89070 0.85429 0.93087 0.96245 1.22332 0.99638 1.00558 0.98657 1.21270 0.93951 0.98979 1.42999 0.92590 1.25561 0.94515 1.02261 0.94742 1.69977 1.03523 1.35899 1.47834 0.85991 0.78414 0.79970 0.78920 1.18455 1.18961 1.21787 0.91810 0.93169 0.91620 0.94148 0.93152 0.84677 0.90261 0.75896 0.94128 0.91653 0.93662 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.87 71.98 0.71 -2.17 16 2 C -0.09 -2.37 4.47 30.59 0.14 -2.23 16 3 C -0.11 -2.50 5.74 -10.79 -0.06 -2.56 16 4 H 0.14 2.26 8.07 -2.39 -0.02 2.24 16 5 C -0.14 -3.11 9.88 30.60 0.30 -2.81 16 6 C -0.20 -5.24 6.19 -11.54 -0.07 -5.31 16 7 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 8 C 0.52 19.79 7.56 87.66 0.66 20.45 16 9 O -0.59 -26.21 12.77 -3.04 -0.04 -26.25 16 10 N -0.70 -28.25 5.07 -446.09 -2.26 -30.51 16 11 C 0.24 11.77 2.15 44.25 0.10 11.86 16 12 H 0.02 1.07 6.64 -2.39 -0.02 1.05 16 13 C -0.15 -6.85 8.96 71.98 0.65 -6.20 16 14 C -0.53 -29.65 9.31 25.60 0.24 -29.41 16 15 H 0.06 3.30 7.98 -2.91 -0.02 3.28 16 16 C 0.03 1.66 5.45 84.66 0.46 2.12 16 17 N -0.93 -56.48 13.96 21.45 0.30 -56.18 16 18 Si 0.94 45.43 24.37 68.60 1.67 47.10 16 19 H -0.26 -11.73 6.87 99.48 0.68 -11.04 16 20 H -0.26 -12.82 6.53 99.48 0.65 -12.17 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 1.31 7.30 -2.39 -0.02 1.29 16 26 H 0.05 1.67 6.92 -2.39 -0.02 1.65 16 27 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 2.08 8.03 -2.38 -0.02 2.06 16 29 H 0.41 14.38 8.54 -92.71 -0.79 13.59 16 30 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 31 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -67.14 268.31 3.01 -64.13 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.22 Total: 17.97 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.12 Total: -16.27 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.96 Total: -86.69 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.25 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -67.14 3.01 -64.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387538651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.206 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds