Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47322 * 2 1 4 4 H 1.08997 * 115.54934 * 29.28639 * 3 2 1 5 5 C 1.53000 * 117.50205 * 243.61261 * 3 2 1 6 6 C 1.53000 * 117.49734 * 174.98850 * 3 2 1 7 7 H 1.08999 * 117.50379 * 0.02562 * 6 3 2 8 8 C 1.50699 * 117.49880 * 214.98175 * 6 3 2 9 9 O 1.21289 * 120.00327 * 359.97438 * 8 6 3 10 10 N 1.34777 * 120.00485 * 180.02562 * 8 6 3 11 11 C 1.46498 * 120.00624 * 179.97438 * 10 8 6 12 12 H 1.09003 * 109.46657 * 34.99851 * 11 10 8 13 13 C 1.52996 * 109.47229 * 275.00300 * 11 10 8 14 14 C 1.50698 * 109.47359 * 155.00004 * 11 10 8 15 15 H 1.08001 * 119.99993 * 34.99906 * 14 11 10 16 16 C 1.37881 * 119.99895 * 215.00796 * 14 11 10 17 17 N 1.31518 * 119.99655 * 184.91416 * 16 14 11 18 18 Si 1.86795 * 119.99990 * 4.91134 * 16 14 11 19 19 H 1.48504 * 109.47241 * 84.83884 * 18 16 14 20 20 H 1.48508 * 109.47076 * 204.83592 * 18 16 14 21 21 H 1.48498 * 109.47602 * 324.83579 * 18 16 14 22 22 H 1.08996 * 109.47392 * 59.99606 * 1 2 3 23 23 H 1.09004 * 109.46522 * 299.99691 * 1 2 3 24 24 H 1.08994 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47392 * 120.00394 * 2 1 3 26 26 H 1.09004 * 109.46522 * 240.00309 * 2 1 3 27 27 H 1.09006 * 117.49619 * 359.97438 * 5 3 2 28 28 H 1.09000 * 117.50090 * 145.02359 * 5 3 2 29 29 H 0.97005 * 119.99452 * 359.97438 * 10 8 6 30 30 H 1.08997 * 109.47155 * 295.03161 * 13 11 10 31 31 H 1.09002 * 109.47445 * 55.03463 * 13 11 10 32 32 H 1.09001 * 109.47461 * 175.03538 * 13 11 10 33 33 H 0.97002 * 119.99316 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3881 2.1715 0.4810 5 6 2.8442 1.9075 -1.2157 6 6 3.5502 1.6577 0.1186 7 1 4.1804 0.7718 0.1961 8 6 4.0228 2.8618 0.8917 9 8 3.2157 3.6169 1.3913 10 7 5.3423 3.1004 1.0273 11 6 5.8018 4.2712 1.7785 12 1 5.1234 4.4578 2.6111 13 6 5.8252 5.4918 0.8563 14 6 7.1891 4.0154 2.3085 15 1 7.8902 3.4340 1.7280 16 6 7.5632 4.5233 3.5345 17 7 8.8018 4.3832 3.9540 18 14 6.3110 5.4105 4.5994 19 1 5.5492 4.4177 5.3990 20 1 7.0133 6.3475 5.5128 21 1 5.3752 6.1716 3.7334 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 0.8899 26 1 1.8932 -0.5138 -0.8901 27 1 3.0103 1.1855 -2.0154 28 1 2.7216 2.9427 -1.5342 29 1 5.9879 2.4967 0.6275 30 1 6.5681 5.3413 0.0731 31 1 4.8423 5.6244 0.4041 32 1 6.0817 6.3793 1.4347 33 1 9.0651 4.7409 4.8164 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387538652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -36.384563 kcal Electronic energy + Delta-G solvation = -13892.821763 eV Core-core repulsion = 11532.523901 eV Total energy + Delta-G solvation = -2360.297862 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.43912 -36.93402 -34.73706 -32.35986 -32.00286 -29.73778 -25.32915 -24.38420 -23.57938 -20.81562 -20.09152 -19.44086 -17.45793 -16.16129 -15.54478 -14.72171 -14.54174 -14.25099 -13.89251 -13.35344 -12.64231 -12.51472 -12.33425 -12.23318 -12.07885 -11.47142 -11.32444 -11.12115 -11.01220 -10.80954 -10.58266 -10.12670 -9.89546 -9.87026 -9.19250 -9.08919 -8.68947 -8.04878 -6.22908 -4.26368 3.09141 3.27506 3.34619 3.42381 3.89478 4.10334 4.33411 4.78513 4.89918 5.00264 5.15782 5.21099 5.30521 5.45736 5.57518 5.68185 5.82756 5.89895 6.01786 6.08695 6.12322 6.36156 6.43093 6.53940 6.69452 6.95680 7.21325 7.40412 7.58483 8.16647 8.61513 8.78090 9.04394 9.39591 10.88905 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.047926 B = 0.006879 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.099319 B = 4069.675963 C = 4179.308685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.123 4.123 4 H 0.116 0.884 5 C -0.152 4.152 6 C -0.186 4.186 7 H 0.119 0.881 8 C 0.529 3.471 9 O -0.562 6.562 10 N -0.700 5.700 11 C 0.230 3.770 12 H 0.049 0.951 13 C -0.147 4.147 14 C -0.530 4.530 15 H 0.079 0.921 16 C 0.081 3.919 17 N -0.890 5.890 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.261 1.261 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.394 0.606 30 H 0.047 0.953 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 -6.966 -8.571 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.142 4.142 4 H 0.134 0.866 5 C -0.189 4.189 6 C -0.207 4.207 7 H 0.137 0.863 8 C 0.314 3.686 9 O -0.442 6.442 10 N -0.347 5.347 11 C 0.127 3.873 12 H 0.067 0.933 13 C -0.206 4.206 14 C -0.568 4.568 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.526 5.526 18 Si 0.701 3.299 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.185 1.185 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.227 0.773 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.717 -6.359 -8.037 15.566 hybrid contribution -0.016 0.164 0.491 0.518 sum -11.732 -6.195 -7.546 15.263 Atomic orbital electron populations 1.21736 0.95445 1.01333 1.02085 1.21140 0.96020 0.94004 1.01984 1.22418 0.92191 0.98267 1.01309 0.86612 1.23040 1.02722 1.02783 0.90392 1.22405 0.97032 0.99728 1.01567 0.86305 1.19635 0.83369 0.85285 0.80319 1.90624 1.54295 1.49406 1.49919 1.46564 1.05468 1.28820 1.53875 1.19130 0.95590 0.81887 0.90647 0.93288 1.22211 0.98704 0.99545 1.00109 1.21019 0.95741 1.35726 1.04308 0.90331 1.24942 0.95222 0.95068 0.97115 1.69888 1.16756 1.45256 1.20693 0.86887 0.81764 0.80397 0.80812 1.19859 1.21159 1.18512 0.92646 0.92517 0.92848 0.91480 0.91851 0.88258 0.88533 0.77295 0.93412 0.95299 0.92945 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.87 37.16 0.37 -1.00 16 2 C -0.09 -0.97 6.21 -26.73 -0.17 -1.14 16 3 C -0.12 -1.63 5.25 -90.62 -0.48 -2.10 16 4 H 0.12 1.75 7.60 -51.93 -0.39 1.36 16 5 C -0.15 -1.88 9.88 -26.73 -0.26 -2.14 16 6 C -0.19 -2.75 5.91 -91.77 -0.54 -3.30 16 7 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 8 C 0.53 10.58 7.58 -10.99 -0.08 10.50 16 9 O -0.56 -13.32 15.92 5.55 0.09 -13.23 16 10 N -0.70 -14.59 5.07 -54.93 -0.28 -14.87 16 11 C 0.23 5.62 2.22 -69.09 -0.15 5.47 16 12 H 0.05 1.31 4.73 -51.93 -0.25 1.06 16 13 C -0.15 -3.31 9.47 37.16 0.35 -2.95 16 14 C -0.53 -14.46 9.05 -34.44 -0.31 -14.78 16 15 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 16 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 18 Si 0.87 21.92 26.99 -169.99 -4.59 17.33 16 19 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.46 6.82 56.52 0.39 -6.08 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 27 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 28 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.39 7.24 8.59 -40.82 -0.35 6.89 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -31.26 280.35 -6.35 -37.61 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.20 Total: 3.81 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.38 Total: -9.25 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.50 Total: -40.50 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.59 Total: 17.33 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.26 -6.35 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387538652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.227 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds