Wall clock time and date at job start Mon Mar 30 2020 02:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09001 * 115.54642 * 29.33350 * 3 2 1 5 5 C 1.52998 * 117.50222 * 243.62395 * 3 2 1 6 6 C 1.52997 * 117.50253 * 174.99851 * 3 2 1 7 7 H 1.09002 * 117.50160 * 215.00631 * 6 3 2 8 8 C 1.50696 * 117.49778 * 0.02562 * 6 3 2 9 9 O 1.21279 * 119.99995 * 0.02562 * 8 6 3 10 10 N 1.34782 * 120.00232 * 179.97438 * 8 6 3 11 11 C 1.46490 * 120.00189 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47178 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47199 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00167 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00037 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00196 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47197 * 60.00031 * 17 15 13 19 19 H 1.48507 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47136 * 299.99797 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09000 * 117.50148 * 359.97438 * 5 3 2 27 27 H 1.09011 * 117.50001 * 145.01629 * 5 3 2 28 28 H 0.97003 * 119.99592 * 0.02562 * 10 8 6 29 29 H 1.09001 * 109.47266 * 299.99679 * 11 10 8 30 30 H 1.09001 * 109.47424 * 59.99921 * 11 10 8 31 31 H 1.08997 * 109.47016 * 299.99717 * 12 11 10 32 32 H 1.08998 * 109.46915 * 59.99949 * 12 11 10 33 33 H 0.97001 * 120.00647 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1714 0.4818 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 3.8920 2.5286 0.6779 8 6 4.4214 0.4330 0.2253 9 8 3.9195 -0.6710 0.2152 10 7 5.7586 0.5643 0.3313 11 6 6.6057 -0.6264 0.4348 12 6 8.0715 -0.2017 0.5435 13 6 8.9429 -1.4266 0.6493 14 1 8.4959 -2.4097 0.6404 15 6 10.3107 -1.2923 0.7587 16 7 10.8551 -0.0951 0.7701 17 14 11.3909 -2.8106 0.8906 18 1 11.2087 -3.6542 -0.3179 19 1 12.8135 -2.3983 0.9973 20 1 11.0090 -3.5864 2.0978 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.0099 1.1858 -2.0156 27 1 2.7212 2.9429 -1.5343 28 1 6.1601 1.4473 0.3390 29 1 6.3259 -1.1954 1.3214 30 1 6.4714 -1.2460 -0.4519 31 1 8.3516 0.3675 -0.3428 32 1 8.2054 0.4177 1.4304 33 1 11.8174 -0.0005 0.8467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387643562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:43 Heat of formation + Delta-G solvation = -38.079451 kcal Electronic energy + Delta-G solvation = -13555.309687 eV Core-core repulsion = 11194.938329 eV Total energy + Delta-G solvation = -2360.371358 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.78411 -36.82413 -34.70390 -32.85687 -31.95912 -29.64532 -25.46444 -23.81052 -23.31816 -21.03515 -20.60200 -19.51978 -16.84446 -16.22314 -15.45664 -14.98588 -14.51554 -14.47121 -14.05162 -13.69214 -13.06865 -12.79478 -12.30450 -12.20798 -11.87771 -11.33877 -11.20588 -11.03116 -11.00314 -10.65317 -10.34874 -10.14857 -9.93532 -9.70042 -9.39048 -9.03112 -8.51388 -8.32378 -6.08923 -4.11948 2.86293 3.31452 3.35160 3.38117 3.65475 3.92824 4.42017 4.61403 4.89480 4.94544 5.20882 5.27960 5.31824 5.40559 5.53718 5.65486 5.76123 5.94871 6.03082 6.13254 6.34060 6.36134 6.37122 6.63929 6.75285 6.97979 7.52435 7.62417 7.89208 8.07385 8.28723 8.72105 8.93968 9.52844 11.02669 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.071249 B = 0.005074 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.891332 B = 5517.077645 C = 5808.170279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.117 4.117 4 H 0.108 0.892 5 C -0.153 4.153 6 C -0.192 4.192 7 H 0.120 0.880 8 C 0.533 3.467 9 O -0.547 6.547 10 N -0.719 5.719 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.397 0.603 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.249 5.422 -1.931 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.136 4.136 4 H 0.126 0.874 5 C -0.191 4.191 6 C -0.213 4.213 7 H 0.138 0.862 8 C 0.319 3.681 9 O -0.425 6.425 10 N -0.369 5.369 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.231 0.769 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.399 4.695 -1.921 16.213 hybrid contribution 1.064 -0.162 0.133 1.085 sum -14.335 4.533 -1.788 15.140 Atomic orbital electron populations 1.21844 0.96686 1.01298 1.01085 1.21154 0.93761 0.93232 1.04132 1.22418 0.90956 0.99228 1.00961 0.87424 1.23051 1.02612 1.02574 0.90836 1.22343 0.95445 0.99443 1.04053 0.86223 1.19626 0.82648 0.89369 0.76496 1.90656 1.73634 1.27354 1.50903 1.46306 1.06140 1.11309 1.73102 1.21705 0.91978 0.85787 1.00546 1.19320 0.87749 0.97660 0.97766 1.21019 0.91451 0.92641 1.50998 0.92321 1.24994 0.98138 0.96117 0.94999 1.69946 1.11447 1.21838 1.50125 0.86568 0.79200 0.82938 0.78809 1.20101 1.21226 1.20107 0.93178 0.92897 0.93184 0.90245 0.91307 0.88330 0.88143 0.76917 0.92636 0.92663 0.95959 0.95962 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.87 37.16 0.37 -1.18 16 2 C -0.09 -1.11 4.47 -26.73 -0.12 -1.23 16 3 C -0.12 -1.35 5.74 -90.62 -0.52 -1.87 16 4 H 0.11 1.02 8.07 -51.93 -0.42 0.60 16 5 C -0.15 -1.68 9.88 -26.73 -0.26 -1.95 16 6 C -0.19 -2.45 6.19 -91.78 -0.57 -3.01 16 7 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 8 C 0.53 9.16 7.59 -10.98 -0.08 9.08 16 9 O -0.55 -11.02 13.10 5.56 0.07 -10.95 16 10 N -0.72 -12.85 5.56 -60.30 -0.33 -13.19 16 11 C 0.12 2.64 5.61 -4.05 -0.02 2.62 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 1.21 6.92 -51.93 -0.36 0.85 16 25 H 0.07 1.00 7.29 -51.93 -0.38 0.63 16 26 H 0.10 1.18 8.03 -51.93 -0.42 0.77 16 27 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.40 6.20 8.47 -40.82 -0.35 5.85 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -30.65 279.94 -7.36 -38.01 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.27 Total: 1.73 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.76 Total: -10.73 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.40 Total: -38.74 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.65 -7.36 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387643562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.069 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds