Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09001 * 115.54642 * 29.33350 * 3 2 1 5 5 C 1.52998 * 117.50222 * 243.62395 * 3 2 1 6 6 C 1.52997 * 117.50253 * 174.99851 * 3 2 1 7 7 H 1.09002 * 117.50160 * 215.00631 * 6 3 2 8 8 C 1.50696 * 117.49778 * 0.02562 * 6 3 2 9 9 O 1.21279 * 119.99995 * 0.02562 * 8 6 3 10 10 N 1.34782 * 120.00232 * 179.97438 * 8 6 3 11 11 C 1.46490 * 120.00189 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47178 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47199 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00167 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00037 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00196 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47197 * 60.00031 * 17 15 13 19 19 H 1.48507 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47136 * 299.99797 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09000 * 117.50148 * 359.97438 * 5 3 2 27 27 H 1.09011 * 117.50001 * 145.01629 * 5 3 2 28 28 H 0.97003 * 119.99592 * 0.02562 * 10 8 6 29 29 H 1.09001 * 109.47266 * 299.99679 * 11 10 8 30 30 H 1.09001 * 109.47424 * 59.99921 * 11 10 8 31 31 H 1.08997 * 109.47016 * 299.99717 * 12 11 10 32 32 H 1.08998 * 109.46915 * 59.99949 * 12 11 10 33 33 H 0.97001 * 120.00647 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1714 0.4818 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 3.8920 2.5286 0.6779 8 6 4.4214 0.4330 0.2253 9 8 3.9195 -0.6710 0.2152 10 7 5.7586 0.5643 0.3313 11 6 6.6057 -0.6264 0.4348 12 6 8.0715 -0.2017 0.5435 13 6 8.9429 -1.4266 0.6493 14 1 8.4959 -2.4097 0.6404 15 6 10.3107 -1.2923 0.7587 16 7 10.8551 -0.0951 0.7701 17 14 11.3909 -2.8106 0.8906 18 1 11.2087 -3.6542 -0.3179 19 1 12.8135 -2.3983 0.9973 20 1 11.0090 -3.5864 2.0978 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.0099 1.1858 -2.0156 27 1 2.7212 2.9429 -1.5343 28 1 6.1601 1.4473 0.3390 29 1 6.3259 -1.1954 1.3214 30 1 6.4714 -1.2460 -0.4519 31 1 8.3516 0.3675 -0.3428 32 1 8.2054 0.4177 1.4304 33 1 11.8174 -0.0005 0.8467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387643562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -57.531166 kcal Electronic energy + Delta-G solvation = -13556.153177 eV Core-core repulsion = 11194.938329 eV Total energy + Delta-G solvation = -2361.214848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08034 -38.01758 -36.40595 -34.82208 -32.96046 -31.51231 -27.25555 -24.93214 -24.59196 -22.76006 -21.72081 -20.85046 -18.61171 -17.82738 -16.76422 -16.48764 -16.40485 -15.89123 -15.04636 -14.95585 -14.70303 -14.29821 -13.98860 -13.25523 -13.11972 -12.96340 -12.84131 -12.54241 -12.26480 -12.20158 -11.92626 -11.64714 -11.47405 -11.13110 -10.94503 -10.61361 -10.46186 -9.97999 -8.25350 -6.36404 1.40879 1.43328 1.51409 1.57128 2.25798 2.45103 2.89778 3.09160 3.64606 3.86757 3.97931 4.17779 4.37674 4.46455 4.49626 4.54828 4.67551 4.80737 4.83124 4.91521 5.04576 5.21038 5.25213 5.31317 5.36034 5.49855 5.55826 5.65245 5.77427 6.14639 6.67154 6.76586 7.33021 7.33323 8.86360 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.071249 B = 0.005074 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.891332 B = 5517.077645 C = 5808.170279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.114 4.114 4 H 0.139 0.861 5 C -0.137 4.137 6 C -0.202 4.202 7 H 0.148 0.852 8 C 0.527 3.473 9 O -0.582 6.582 10 N -0.717 5.717 11 C 0.142 3.858 12 C 0.023 3.977 13 C -0.550 4.550 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.927 5.927 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.268 1.268 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.410 0.590 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 6.298 -2.051 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.132 4.132 4 H 0.157 0.843 5 C -0.175 4.175 6 C -0.223 4.223 7 H 0.166 0.834 8 C 0.315 3.685 9 O -0.463 6.463 10 N -0.368 5.368 11 C 0.018 3.982 12 C -0.014 4.014 13 C -0.588 4.588 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.193 1.193 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.245 0.755 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.313 5.595 -2.045 17.367 hybrid contribution 1.310 -0.437 0.158 1.390 sum -15.003 5.158 -1.887 15.977 Atomic orbital electron populations 1.21785 0.94305 1.01691 1.02454 1.21061 0.95854 0.94026 1.01415 1.22576 0.90312 0.98780 1.01538 0.84290 1.23172 1.00621 1.04093 0.89585 1.22359 0.95410 0.98033 1.06471 0.83391 1.20473 0.82368 0.90602 0.75043 1.90651 1.74105 1.29320 1.52179 1.46160 1.06437 1.10651 1.73514 1.21181 0.90682 0.86954 0.99391 1.19127 0.89570 0.96477 0.96259 1.21442 0.92489 0.93513 1.51382 0.92404 1.25876 0.99530 0.99322 0.94353 1.70050 1.11977 1.23913 1.50655 0.85491 0.77328 0.79066 0.79125 1.19330 1.20436 1.19344 0.91745 0.93132 0.91747 0.93270 0.93872 0.89876 0.84650 0.75479 0.93807 0.93848 0.97365 0.97347 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.87 71.98 0.71 -1.99 16 2 C -0.09 -2.19 4.47 30.59 0.14 -2.05 16 3 C -0.11 -2.33 5.74 -10.80 -0.06 -2.39 16 4 H 0.14 2.03 8.07 -2.39 -0.02 2.01 16 5 C -0.14 -2.63 9.88 30.59 0.30 -2.33 16 6 C -0.20 -4.72 6.19 -11.54 -0.07 -4.79 16 7 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 8 C 0.53 18.05 7.59 87.66 0.67 18.71 16 9 O -0.58 -24.06 13.10 -3.03 -0.04 -24.10 16 10 N -0.72 -25.72 5.56 -463.07 -2.57 -28.30 16 11 C 0.14 6.29 5.61 86.38 0.48 6.78 16 12 C 0.02 1.19 5.09 29.85 0.15 1.34 16 13 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 17 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.05 1.54 6.92 -2.39 -0.02 1.52 16 25 H 0.04 1.29 7.29 -2.39 -0.02 1.27 16 26 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 27 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.41 12.60 8.47 -92.71 -0.79 11.82 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -66.78 279.94 3.01 -63.77 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.29 Total: 13.94 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 3.01 Total: -16.79 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.29 Total: -82.76 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.78 3.01 -63.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387643562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.240 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds