Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 H 1.08989 * 115.55185 * 330.67547 * 3 2 1 5 5 C 1.52997 * 117.49444 * 116.38514 * 3 2 1 6 6 C 1.52997 * 60.00357 * 107.48850 * 5 3 2 7 7 H 1.09000 * 117.49908 * 252.50843 * 6 5 3 8 8 C 1.50698 * 117.52064 * 107.47869 * 6 5 3 9 9 O 1.21292 * 119.99622 * 291.37527 * 8 6 5 10 10 N 1.34773 * 120.00325 * 111.37111 * 8 6 5 11 11 C 1.37093 * 120.00433 * 180.02562 * 10 8 6 12 12 H 1.08008 * 119.99645 * 326.16233 * 11 10 8 13 13 C 1.38940 * 120.00561 * 146.16434 * 11 10 8 14 14 N 1.31421 * 119.99743 * 337.71319 * 13 11 10 15 15 Si 1.86801 * 120.00321 * 157.71369 * 13 11 10 16 16 H 1.48505 * 109.47039 * 90.00048 * 15 13 11 17 17 H 1.48509 * 109.47202 * 209.99984 * 15 13 11 18 18 H 1.48498 * 109.47121 * 330.00052 * 15 13 11 19 19 C 1.46504 * 119.99740 * 359.97438 * 10 8 6 20 20 C 1.53002 * 109.46707 * 84.77412 * 19 10 8 21 21 H 1.08998 * 109.46892 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46911 * 299.99109 * 1 2 3 23 23 H 1.09000 * 109.47535 * 59.99761 * 1 2 3 24 24 H 1.09001 * 109.47601 * 120.00784 * 2 1 3 25 25 H 1.09007 * 109.46911 * 240.00891 * 2 1 3 26 26 H 1.09003 * 117.49598 * 214.98231 * 5 3 2 27 27 H 1.09005 * 117.50440 * 359.97438 * 5 3 2 28 28 H 0.97004 * 119.99638 * 180.02562 * 14 13 11 29 29 H 1.08995 * 109.47149 * 204.76836 * 19 10 8 30 30 H 1.08994 * 109.47302 * 324.77486 * 19 10 8 31 31 H 1.09002 * 109.47168 * 59.99701 * 20 19 10 32 32 H 1.09001 * 109.47204 * 179.97438 * 20 19 10 33 33 H 1.09000 * 109.47435 * 300.00000 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1715 -0.4816 5 6 2.8440 1.9075 1.2158 6 6 3.5501 1.6579 -0.1184 7 1 4.1803 0.7720 -0.1963 8 6 4.0228 2.8618 -0.8919 9 8 3.2156 3.6163 -1.3922 10 7 5.3423 3.1001 -1.0277 11 6 5.7723 4.1955 -1.7310 12 1 5.2100 4.5438 -2.5849 13 6 6.9312 4.8577 -1.3454 14 7 7.3728 4.7457 -0.1126 15 14 7.8618 5.9073 -2.5790 16 1 7.3474 7.2996 -2.5320 17 1 9.3081 5.9023 -2.2419 18 1 7.6698 5.3545 -3.9438 19 6 6.3172 2.1890 -0.4229 20 6 6.5756 1.0162 -1.3708 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 2.7213 2.9426 1.5344 27 1 3.0094 1.1859 2.0159 28 1 8.1818 5.2083 0.1567 29 1 7.2502 2.7229 -0.2427 30 1 5.9254 1.8129 0.5221 31 1 6.9673 1.3924 -2.3159 32 1 7.3013 0.3385 -0.9211 33 1 5.6425 0.4823 -1.5511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387648495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -21.147257 kcal Electronic energy + Delta-G solvation = -14321.798008 eV Core-core repulsion = 11962.160885 eV Total energy + Delta-G solvation = -2359.637123 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.98279 -36.54723 -34.77001 -32.08654 -31.55039 -29.40527 -25.63475 -23.68333 -22.96642 -21.85211 -20.13693 -18.43020 -16.79436 -16.05232 -14.99902 -14.52717 -14.33078 -14.06395 -13.56968 -13.06205 -12.84721 -12.35223 -11.96190 -11.83489 -11.70367 -11.46415 -11.13074 -10.99470 -10.89045 -10.69909 -10.34671 -10.31786 -10.02361 -9.68027 -9.50255 -8.88310 -8.33222 -7.43720 -6.29500 -3.89566 3.18372 3.27487 3.33461 3.70909 4.15015 4.47987 4.75684 5.05495 5.21263 5.27421 5.35759 5.58289 5.61593 5.75192 5.88285 5.98152 6.02605 6.07680 6.17335 6.25877 6.29948 6.31998 6.41354 6.52191 6.63448 6.79472 6.94096 7.32988 7.63098 8.29794 8.57304 9.24079 9.48238 10.09959 10.74251 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.050237 B = 0.008021 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.226778 B = 3490.214356 C = 3670.410192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.155 4.155 6 C -0.170 4.170 7 H 0.110 0.890 8 C 0.485 3.515 9 O -0.585 6.585 10 N -0.437 5.437 11 C -0.306 4.306 12 H 0.091 0.909 13 C 0.034 3.966 14 N -0.870 5.870 15 Si 0.917 3.083 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.097 3.903 20 C -0.165 4.165 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.267 0.733 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -9.070 2.083 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.150 4.150 4 H 0.131 0.869 5 C -0.192 4.192 6 C -0.191 4.191 7 H 0.128 0.872 8 C 0.273 3.727 9 O -0.470 6.470 10 N -0.156 5.156 11 C -0.434 4.434 12 H 0.109 0.891 13 C -0.170 4.170 14 N -0.508 5.508 15 Si 0.743 3.257 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.027 4.027 20 C -0.223 4.223 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.094 -8.611 1.936 9.729 hybrid contribution 0.735 0.452 -0.410 0.955 sum -3.358 -8.159 1.526 8.954 Atomic orbital electron populations 1.21732 0.95719 1.00990 1.02022 1.21115 0.95737 0.94487 1.01582 1.22363 0.93216 0.97570 1.01891 0.86942 1.22960 1.03353 1.02407 0.90503 1.22383 0.95571 1.00128 1.01051 0.87226 1.19451 0.83389 0.86273 0.83602 1.90492 1.53776 1.50438 1.52268 1.43436 1.02854 1.22205 1.47061 1.19454 1.08359 1.06091 1.09516 0.89121 1.25325 0.98886 0.97061 0.95682 1.69937 1.23295 1.42415 1.15185 0.86096 0.78455 0.80071 0.81050 1.20315 1.20810 1.19427 1.21571 0.97468 0.90075 0.93612 1.22230 1.00246 0.98565 1.01264 0.93117 0.92698 0.92613 0.92120 0.91853 0.88760 0.88909 0.92295 0.86975 0.93295 0.92505 0.93177 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.87 37.16 0.37 -1.32 16 2 C -0.09 -1.21 6.22 -26.73 -0.17 -1.38 16 3 C -0.13 -2.25 5.25 -90.62 -0.48 -2.73 16 4 H 0.11 2.15 7.60 -51.94 -0.39 1.76 16 5 C -0.15 -2.66 9.88 -26.73 -0.26 -2.93 16 6 C -0.17 -3.36 4.49 -91.77 -0.41 -3.77 16 7 H 0.11 1.96 6.01 -51.93 -0.31 1.65 16 8 C 0.48 12.43 7.38 -10.99 -0.08 12.35 16 9 O -0.59 -17.07 16.08 5.55 0.09 -16.98 16 10 N -0.44 -11.50 2.56 -114.82 -0.29 -11.79 16 11 C -0.31 -8.74 8.98 -14.94 -0.13 -8.88 16 12 H 0.09 2.71 7.70 -52.48 -0.40 2.31 16 13 C 0.03 0.92 4.92 -17.47 -0.09 0.83 16 14 N -0.87 -23.81 11.33 55.50 0.63 -23.18 16 15 Si 0.92 20.88 29.61 -169.99 -5.03 15.84 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C 0.10 2.18 5.31 -4.04 -0.02 2.16 16 20 C -0.16 -3.08 10.02 37.16 0.37 -2.70 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 25 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.09 1.32 8.03 -51.93 -0.42 0.91 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.11 2.77 5.34 -51.93 -0.28 2.49 16 30 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.75 6.86 -51.93 -0.36 0.40 16 LS Contribution 274.88 15.07 4.14 4.14 Total: -1.00 -31.13 274.88 -6.39 -37.52 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.03 Total: 2.80 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.90 Total: -8.36 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.33 Total: -34.97 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.09 Total: -16.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.13 -6.39 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387648495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.376 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds