Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 H 1.08989 * 115.55185 * 330.67547 * 3 2 1 5 5 C 1.52997 * 117.49444 * 116.38514 * 3 2 1 6 6 C 1.52997 * 60.00357 * 107.48850 * 5 3 2 7 7 H 1.09000 * 117.49908 * 252.50843 * 6 5 3 8 8 C 1.50698 * 117.52064 * 107.47869 * 6 5 3 9 9 O 1.21292 * 119.99622 * 291.37527 * 8 6 5 10 10 N 1.34773 * 120.00325 * 111.37111 * 8 6 5 11 11 C 1.37093 * 120.00433 * 180.02562 * 10 8 6 12 12 H 1.08008 * 119.99645 * 326.16233 * 11 10 8 13 13 C 1.38940 * 120.00561 * 146.16434 * 11 10 8 14 14 N 1.31421 * 119.99743 * 337.71319 * 13 11 10 15 15 Si 1.86801 * 120.00321 * 157.71369 * 13 11 10 16 16 H 1.48505 * 109.47039 * 90.00048 * 15 13 11 17 17 H 1.48509 * 109.47202 * 209.99984 * 15 13 11 18 18 H 1.48498 * 109.47121 * 330.00052 * 15 13 11 19 19 C 1.46504 * 119.99740 * 359.97438 * 10 8 6 20 20 C 1.53002 * 109.46707 * 84.77412 * 19 10 8 21 21 H 1.08998 * 109.46892 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46911 * 299.99109 * 1 2 3 23 23 H 1.09000 * 109.47535 * 59.99761 * 1 2 3 24 24 H 1.09001 * 109.47601 * 120.00784 * 2 1 3 25 25 H 1.09007 * 109.46911 * 240.00891 * 2 1 3 26 26 H 1.09003 * 117.49598 * 214.98231 * 5 3 2 27 27 H 1.09005 * 117.50440 * 359.97438 * 5 3 2 28 28 H 0.97004 * 119.99638 * 180.02562 * 14 13 11 29 29 H 1.08995 * 109.47149 * 204.76836 * 19 10 8 30 30 H 1.08994 * 109.47302 * 324.77486 * 19 10 8 31 31 H 1.09002 * 109.47168 * 59.99701 * 20 19 10 32 32 H 1.09001 * 109.47204 * 179.97438 * 20 19 10 33 33 H 1.09000 * 109.47435 * 300.00000 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1715 -0.4816 5 6 2.8440 1.9075 1.2158 6 6 3.5501 1.6579 -0.1184 7 1 4.1803 0.7720 -0.1963 8 6 4.0228 2.8618 -0.8919 9 8 3.2156 3.6163 -1.3922 10 7 5.3423 3.1001 -1.0277 11 6 5.7723 4.1955 -1.7310 12 1 5.2100 4.5438 -2.5849 13 6 6.9312 4.8577 -1.3454 14 7 7.3728 4.7457 -0.1126 15 14 7.8618 5.9073 -2.5790 16 1 7.3474 7.2996 -2.5320 17 1 9.3081 5.9023 -2.2419 18 1 7.6698 5.3545 -3.9438 19 6 6.3172 2.1890 -0.4229 20 6 6.5756 1.0162 -1.3708 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 2.7213 2.9426 1.5344 27 1 3.0094 1.1859 2.0159 28 1 8.1818 5.2083 0.1567 29 1 7.2502 2.7229 -0.2427 30 1 5.9254 1.8129 0.5221 31 1 6.9673 1.3924 -2.3159 32 1 7.3013 0.3385 -0.9211 33 1 5.6425 0.4823 -1.5511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387648495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -39.834311 kcal Electronic energy + Delta-G solvation = -14322.608340 eV Core-core repulsion = 11962.160885 eV Total energy + Delta-G solvation = -2360.447455 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78621 -38.12127 -36.75055 -34.01716 -32.76143 -31.19225 -27.59435 -25.00188 -24.51368 -23.57624 -21.43388 -20.22472 -18.79298 -17.89096 -16.94099 -16.23118 -15.84891 -15.42571 -15.15022 -14.78985 -14.49342 -13.73515 -13.61907 -13.36175 -13.15627 -12.94029 -12.88560 -12.66385 -12.30911 -12.10414 -12.08199 -11.87463 -11.81848 -11.13947 -10.96542 -10.74830 -10.34147 -9.48318 -8.36387 -6.05727 1.34790 1.39576 1.52924 1.90182 2.27570 2.83070 3.01358 3.16868 3.80826 3.91863 4.04834 4.27252 4.31521 4.40794 4.52629 4.62968 4.65468 4.79145 4.83883 4.94603 5.00268 5.10952 5.17496 5.29312 5.30573 5.33941 5.43607 5.54878 5.58437 6.18698 6.53572 7.16667 7.47841 8.08463 8.65965 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.050237 B = 0.008021 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.226778 B = 3490.214356 C = 3670.410192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.120 4.120 4 H 0.082 0.918 5 C -0.141 4.141 6 C -0.186 4.186 7 H 0.135 0.865 8 C 0.466 3.534 9 O -0.639 6.639 10 N -0.450 5.450 11 C -0.347 4.347 12 H 0.060 0.940 13 C 0.003 3.997 14 N -0.887 5.887 15 Si 0.982 3.018 16 H -0.278 1.278 17 H -0.263 1.263 18 H -0.268 1.268 19 C 0.095 3.905 20 C -0.154 4.154 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.275 0.725 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -11.020 2.934 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.139 4.139 4 H 0.100 0.900 5 C -0.178 4.178 6 C -0.207 4.207 7 H 0.153 0.847 8 C 0.257 3.743 9 O -0.527 6.527 10 N -0.167 5.167 11 C -0.475 4.475 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.525 5.525 15 Si 0.805 3.195 16 H -0.204 1.204 17 H -0.187 1.187 18 H -0.193 1.193 19 C -0.028 4.028 20 C -0.212 4.212 21 H 0.093 0.907 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.467 -10.589 2.810 11.491 hybrid contribution 0.532 1.105 -0.633 1.380 sum -2.935 -9.483 2.177 10.163 Atomic orbital electron populations 1.21732 0.94508 1.02455 1.01690 1.21148 0.96744 0.91408 1.02961 1.22451 0.90967 0.99603 1.00850 0.89962 1.23088 1.01731 1.02313 0.90711 1.22279 0.97733 0.98337 1.02367 0.84702 1.20468 0.82916 0.87668 0.83296 1.90438 1.54983 1.52843 1.54455 1.43746 1.03947 1.22288 1.46721 1.19402 1.09719 1.08329 1.10073 0.92164 1.26091 0.98672 0.97827 0.97354 1.69997 1.23566 1.42672 1.16239 0.85127 0.77768 0.77935 0.78627 1.20388 1.18748 1.19281 1.21682 0.95501 0.90407 0.95192 1.22116 1.01790 0.97560 0.99693 0.90700 0.92406 0.93724 0.89651 0.91458 0.91147 0.84683 0.91537 0.89229 0.91638 0.94187 0.89452 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.87 71.98 0.71 -2.26 16 2 C -0.09 -1.99 6.22 30.59 0.19 -1.80 16 3 C -0.12 -3.97 5.25 -10.79 -0.06 -4.03 16 4 H 0.08 3.24 7.60 -2.39 -0.02 3.22 16 5 C -0.14 -4.62 9.88 30.59 0.30 -4.31 16 6 C -0.19 -7.18 4.49 -11.54 -0.05 -7.24 16 7 H 0.14 4.46 6.01 -2.39 -0.01 4.44 16 8 C 0.47 24.64 7.38 87.66 0.65 25.29 16 9 O -0.64 -39.34 16.08 -3.07 -0.05 -39.39 16 10 N -0.45 -24.23 2.56 -635.55 -1.63 -25.85 16 11 C -0.35 -20.58 8.98 84.04 0.75 -19.83 16 12 H 0.06 3.84 7.70 -2.91 -0.02 3.82 16 13 C 0.00 0.16 4.92 84.92 0.42 0.58 16 14 N -0.89 -48.69 11.33 21.66 0.25 -48.44 16 15 Si 0.98 43.14 29.61 68.60 2.03 45.17 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.10 4.23 5.31 86.38 0.46 4.69 16 20 C -0.15 -5.45 10.02 71.98 0.72 -4.73 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 1.62 7.88 -2.39 -0.02 1.60 16 25 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.14 3.28 8.03 -2.38 -0.02 3.26 16 28 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.09 4.41 5.34 -2.39 -0.01 4.40 16 30 H 0.07 2.63 6.95 -2.39 -0.02 2.61 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 1.79 6.86 -2.39 -0.02 1.77 16 Total: -1.00 -70.71 274.88 5.77 -64.94 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.08 Total: 17.20 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 4.09 Total: -13.63 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.38 Total: -74.30 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.05 Total: -39.39 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.71 5.77 -64.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387648495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.107 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds