Wall clock time and date at job start Mon Mar 30 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47212 * 2 1 4 4 H 1.09007 * 115.56103 * 29.30728 * 3 2 1 5 5 C 1.53003 * 117.49977 * 243.61972 * 3 2 1 6 6 C 1.52999 * 60.00115 * 252.50896 * 5 3 2 7 7 H 1.08997 * 117.50074 * 107.51268 * 6 5 3 8 8 C 1.50703 * 117.49583 * 252.51017 * 6 5 3 9 9 O 1.21296 * 119.99960 * 68.61122 * 8 6 5 10 10 N 1.34774 * 119.99938 * 248.32952 * 8 6 5 11 11 C 1.37094 * 120.00145 * 180.27684 * 10 8 6 12 12 H 1.08001 * 120.00447 * 326.17113 * 11 10 8 13 13 C 1.38950 * 119.99874 * 146.17273 * 11 10 8 14 14 N 1.31417 * 120.00238 * 337.74969 * 13 11 10 15 15 Si 1.86800 * 120.00204 * 157.75537 * 13 11 10 16 16 H 1.48499 * 109.47119 * 89.99410 * 15 13 11 17 17 H 1.48491 * 109.47361 * 209.99824 * 15 13 11 18 18 H 1.48502 * 109.47040 * 329.99863 * 15 13 11 19 19 C 1.46509 * 119.99723 * 0.28112 * 10 8 6 20 20 C 1.53000 * 109.47177 * 84.48519 * 19 10 8 21 21 H 1.08999 * 109.47186 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47142 * 300.00400 * 1 2 3 23 23 H 1.08997 * 109.46969 * 60.00497 * 1 2 3 24 24 H 1.08997 * 109.47142 * 239.99600 * 2 1 3 25 25 H 1.08999 * 109.47189 * 119.99999 * 2 1 3 26 26 H 1.09003 * 117.49668 * 145.01320 * 5 3 2 27 27 H 1.09002 * 117.49543 * 0.02562 * 5 3 2 28 28 H 0.96992 * 120.00262 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.46694 * 204.48957 * 19 10 8 30 30 H 1.08998 * 109.46786 * 324.48256 * 19 10 8 31 31 H 1.09001 * 109.46765 * 60.00008 * 20 19 10 32 32 H 1.08999 * 109.46926 * 179.97438 * 20 19 10 33 33 H 1.08995 * 109.47104 * 300.00271 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1807 0.7722 0.1961 8 6 4.0228 2.8621 0.8914 9 8 3.2156 3.6170 1.3913 10 7 5.3424 3.0971 1.0322 11 6 5.7724 4.1894 1.7402 12 1 5.2000 5.1051 1.7210 13 6 6.9448 4.1185 2.4827 14 7 7.4059 2.9514 2.8730 15 14 7.8656 5.6822 2.9261 16 1 7.3668 6.1985 4.2261 17 1 9.3171 5.3882 3.0343 18 1 7.6447 6.7030 1.8705 19 6 6.3173 2.1853 0.4284 20 6 6.5419 2.5743 -1.0342 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.7212 2.9427 -1.5344 27 1 3.0093 1.1859 -2.0159 28 1 8.2241 2.9020 3.3915 29 1 7.2605 2.2508 0.9708 30 1 5.9394 1.1641 0.4789 31 1 6.9197 3.5955 -1.0846 32 1 7.2675 1.8962 -1.4833 33 1 5.5987 2.5088 -1.5765 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387648498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:02 Heat of formation + Delta-G solvation = -20.452698 kcal Electronic energy + Delta-G solvation = -14327.712833 eV Core-core repulsion = 11968.105828 eV Total energy + Delta-G solvation = -2359.607005 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.99220 -36.54736 -34.76499 -32.09056 -31.53569 -29.37973 -25.66768 -23.71708 -22.77934 -22.05687 -20.13721 -18.37410 -16.73980 -16.13934 -15.04292 -14.64232 -14.25406 -13.94309 -13.54612 -13.17312 -12.75748 -12.26311 -11.97963 -11.84429 -11.74826 -11.49400 -11.11604 -11.01828 -10.86945 -10.70162 -10.41076 -10.32687 -10.03960 -9.67412 -9.44305 -8.88061 -8.32593 -7.43712 -6.29691 -3.89875 3.18371 3.27470 3.33472 3.69947 4.17335 4.46180 4.73976 5.04050 5.24738 5.27526 5.33983 5.54633 5.58212 5.75311 5.90714 5.97631 6.04744 6.10343 6.15022 6.27037 6.32031 6.32723 6.38635 6.56016 6.61868 6.78787 6.95404 7.33396 7.62865 8.29593 8.57117 9.24023 9.48051 10.09911 10.74109 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.008081 C = 0.007632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.984573 B = 3464.225491 C = 3667.765567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.129 4.129 4 H 0.113 0.887 5 C -0.159 4.159 6 C -0.167 4.167 7 H 0.111 0.889 8 C 0.484 3.516 9 O -0.586 6.586 10 N -0.437 5.437 11 C -0.306 4.306 12 H 0.091 0.909 13 C 0.034 3.966 14 N -0.870 5.870 15 Si 0.917 3.083 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.098 3.902 20 C -0.163 4.163 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.267 0.733 29 H 0.111 0.889 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -5.703 -7.267 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.148 4.148 4 H 0.131 0.869 5 C -0.197 4.197 6 C -0.189 4.189 7 H 0.129 0.871 8 C 0.272 3.728 9 O -0.470 6.470 10 N -0.155 5.155 11 C -0.434 4.434 12 H 0.109 0.891 13 C -0.170 4.170 14 N -0.509 5.509 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.026 4.026 20 C -0.221 4.221 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.170 -5.388 -6.897 9.695 hybrid contribution 0.730 0.561 0.236 0.950 sum -3.440 -4.826 -6.661 8.916 Atomic orbital electron populations 1.21730 0.95715 1.01020 1.01984 1.21114 0.95735 0.94452 1.01683 1.22353 0.93207 0.97646 1.01548 0.86941 1.22973 1.03905 1.02149 0.90630 1.22386 0.95672 1.00315 1.00495 0.87098 1.19424 0.83463 0.86160 0.83722 1.90494 1.53797 1.49963 1.52766 1.43447 1.02911 1.23842 1.45279 1.19452 1.07361 0.91134 1.25475 0.89125 1.25327 0.98823 0.97733 0.95071 1.69930 1.22445 1.24157 1.34322 0.86090 0.78409 0.82080 0.79071 1.20309 1.20809 1.19429 1.21576 0.97482 0.91506 0.92077 1.22191 1.00429 1.01526 0.97999 0.93091 0.92581 0.92760 0.92134 0.91702 0.88969 0.88983 0.92279 0.87096 0.93461 0.92672 0.93309 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.87 37.16 0.37 -1.34 16 2 C -0.09 -1.24 6.22 -26.73 -0.17 -1.41 16 3 C -0.13 -2.20 5.25 -90.62 -0.48 -2.67 16 4 H 0.11 2.15 7.60 -51.93 -0.39 1.75 16 5 C -0.16 -2.60 9.63 -26.73 -0.26 -2.85 16 6 C -0.17 -3.29 4.55 -91.77 -0.42 -3.71 16 7 H 0.11 2.03 6.51 -51.93 -0.34 1.70 16 8 C 0.48 12.39 7.37 -10.99 -0.08 12.31 16 9 O -0.59 -17.07 16.08 5.54 0.09 -16.98 16 10 N -0.44 -11.47 2.56 -114.80 -0.29 -11.76 16 11 C -0.31 -8.74 8.98 -14.93 -0.13 -8.88 16 12 H 0.09 2.71 7.70 -52.49 -0.40 2.30 16 13 C 0.03 0.92 4.92 -17.47 -0.09 0.83 16 14 N -0.87 -23.83 11.33 55.50 0.63 -23.20 16 15 Si 0.92 20.88 29.61 -169.99 -5.03 15.85 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C 0.10 2.19 5.44 -4.04 -0.02 2.17 16 20 C -0.16 -3.06 10.17 37.16 0.38 -2.68 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.72 7.88 -51.93 -0.41 0.32 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.09 1.24 8.03 -51.93 -0.42 0.82 16 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.11 2.73 5.34 -51.93 -0.28 2.46 16 30 H 0.05 0.98 6.23 -51.93 -0.32 0.65 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.81 7.43 -51.93 -0.39 0.43 16 LS Contribution 275.32 15.07 4.15 4.15 Total: -1.00 -31.14 275.32 -6.40 -37.54 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.04 Total: 2.62 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.90 Total: -8.21 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.34 Total: -34.96 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.09 Total: -16.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.14 -6.40 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387648498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.083 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds