Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.09001 * 115.54821 * 330.58364 * 5 4 2 7 7 C 1.52997 * 117.49742 * 116.25356 * 5 4 2 8 8 C 1.52997 * 117.50016 * 184.91570 * 5 4 2 9 9 H 1.09005 * 117.49880 * 145.02527 * 8 5 4 10 10 C 1.50697 * 117.50053 * 359.97438 * 8 5 4 11 11 O 1.21295 * 119.99783 * 359.97438 * 10 8 5 12 12 N 1.34777 * 120.00348 * 180.02562 * 10 8 5 13 13 C 1.37097 * 120.00330 * 179.97438 * 12 10 8 14 14 H 1.08006 * 120.00017 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00113 * 179.97438 * 13 12 10 16 16 N 1.31407 * 119.99940 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99815 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46741 * 90.00469 * 17 15 13 19 19 H 1.48500 * 109.46872 * 209.99808 * 17 15 13 20 20 H 1.48499 * 109.47373 * 330.00169 * 17 15 13 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 29 29 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 30 30 H 1.09009 * 117.49773 * 214.97885 * 7 5 4 31 31 H 1.09002 * 117.50224 * 359.97438 * 7 5 4 32 32 H 0.96998 * 119.99510 * 0.02562 * 12 10 8 33 33 H 0.96999 * 120.00430 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 4.0720 -0.0345 -0.6437 7 6 4.1695 -2.2344 -1.1126 8 6 4.2799 -1.4215 -2.4050 9 1 5.2579 -1.0137 -2.6609 10 6 3.4285 -1.8509 -3.5719 11 8 2.2234 -1.7229 -3.5228 12 7 4.0061 -2.3780 -4.6696 13 6 3.2315 -2.7692 -5.7310 14 1 2.1584 -2.6545 -5.6877 15 6 3.8270 -3.3122 -6.8629 16 7 5.1326 -3.4512 -6.9159 17 14 2.7715 -3.8444 -8.3093 18 1 2.6059 -2.7048 -9.2470 19 1 3.4305 -4.9734 -9.0139 20 1 1.4393 -4.2780 -7.8170 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -1.7198 -1.2953 29 1 1.7516 -0.1582 -2.1370 30 1 5.0749 -2.3611 -0.5189 31 1 3.4810 -3.0795 -1.1062 32 1 4.9698 -2.4814 -4.7084 33 1 5.5483 -3.8306 -7.7059 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387741042.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = -38.279478 kcal Electronic energy + Delta-G solvation = -13973.450525 eV Core-core repulsion = 11613.070494 eV Total energy + Delta-G solvation = -2360.380032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.00224 -36.63575 -34.63054 -33.72737 -31.15615 -27.19940 -26.88557 -25.36865 -22.68949 -21.00096 -19.52063 -18.73502 -17.62040 -16.21834 -14.91762 -14.67389 -14.38633 -13.83586 -13.62820 -13.27360 -12.82042 -12.42190 -12.15034 -12.02582 -11.63210 -11.46902 -11.30390 -11.09173 -10.63246 -10.55023 -10.37445 -10.27862 -10.19872 -9.67153 -9.39955 -9.33934 -8.14093 -7.92730 -6.39471 -3.79645 3.17975 3.27351 3.33342 3.71329 4.18431 4.46126 4.89044 5.01371 5.19678 5.27649 5.28745 5.50147 5.56745 5.73189 5.75788 5.81282 5.98379 6.02408 6.04652 6.15198 6.31348 6.36352 6.37603 6.45504 6.57952 6.59773 6.83228 7.15547 7.57023 8.09432 8.65229 9.20396 9.59747 10.11968 10.78375 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.048356 B = 0.006756 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.902165 B = 4143.610247 C = 4515.577817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.068 4.068 5 C -0.122 4.122 6 H 0.102 0.898 7 C -0.163 4.163 8 C -0.172 4.172 9 H 0.107 0.893 10 C 0.469 3.531 11 O -0.589 6.589 12 N -0.559 5.559 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.393 0.607 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 4.946 10.860 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.105 4.105 5 C -0.141 4.141 6 H 0.120 0.880 7 C -0.200 4.200 8 C -0.193 4.193 9 H 0.125 0.875 10 C 0.255 3.745 11 O -0.475 6.475 12 N -0.194 5.194 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.542 5.542 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.226 0.774 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.324 4.939 10.705 12.017 hybrid contribution 0.376 -0.385 -0.879 1.030 sum -1.947 4.554 9.827 11.005 Atomic orbital electron populations 1.21797 0.95728 1.01550 1.01068 1.21216 0.95366 0.96080 0.99238 1.21879 1.00947 0.96442 1.01061 1.21206 0.91458 1.01410 0.96442 1.22343 0.96455 0.95860 0.99447 0.88044 1.23000 1.02719 0.95348 0.98965 1.22254 1.00905 1.06017 0.90153 0.87521 1.19039 0.87931 0.83787 0.83739 1.90497 1.14573 1.60444 1.81986 1.41864 1.09853 1.53890 1.13760 1.19725 0.92976 1.37331 0.92871 0.87930 1.25265 0.96013 0.97520 0.99164 1.69618 1.08910 1.45341 1.30378 0.85864 0.79649 0.78165 0.80643 1.20411 1.20928 1.19438 0.92690 0.92843 0.93493 0.91958 0.93577 0.92716 0.92752 0.91355 0.90084 0.89071 0.88743 0.77409 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 37.16 0.34 -1.48 16 2 C -0.10 -1.35 2.92 -90.62 -0.26 -1.61 16 3 C -0.15 -1.76 9.01 37.16 0.33 -1.43 16 4 C -0.07 -1.16 3.22 -26.73 -0.09 -1.25 16 5 C -0.12 -1.98 5.52 -90.62 -0.50 -2.48 16 6 H 0.10 1.40 6.38 -51.93 -0.33 1.07 16 7 C -0.16 -2.61 9.88 -26.69 -0.26 -2.87 16 8 C -0.17 -3.22 6.19 -91.74 -0.57 -3.79 16 9 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 10 C 0.47 11.35 7.55 -10.99 -0.08 11.26 16 11 O -0.59 -15.72 12.68 5.54 0.07 -15.65 16 12 N -0.56 -14.60 5.29 -10.96 -0.06 -14.65 16 13 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 14 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 17 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.63 6.41 -51.93 -0.33 0.30 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.31 7.29 -51.93 -0.38 0.93 16 29 H 0.08 1.61 6.93 -51.93 -0.36 1.25 16 30 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 32 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -29.73 274.09 -6.52 -36.25 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.03 Total: 9.67 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.33 Total: -11.78 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.67 Total: -38.88 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.73 -6.52 -36.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387741042.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.034 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds