Wall clock time and date at job start Mon Mar 30 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47018 * 119.99969 * 2 1 3 5 5 C 1.53004 * 109.47294 * 64.99968 * 4 2 1 6 6 H 1.08999 * 115.56152 * 330.68805 * 5 4 2 7 7 C 1.52996 * 117.49846 * 116.37284 * 5 4 2 8 8 C 1.52993 * 117.50028 * 184.99715 * 5 4 2 9 9 H 1.09001 * 117.51920 * 359.97438 * 8 5 4 10 10 C 1.50700 * 117.49890 * 145.01994 * 8 5 4 11 11 O 1.21292 * 119.99931 * 0.02562 * 10 8 5 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 8 5 13 13 C 1.37099 * 119.99504 * 180.02562 * 12 10 8 14 14 H 1.07999 * 120.00446 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99362 * 180.02562 * 13 12 10 16 16 N 1.31406 * 120.00245 * 359.71960 * 15 13 12 17 17 Si 1.86803 * 119.99625 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47085 * 89.99660 * 17 15 13 19 19 H 1.48497 * 109.46789 * 209.99669 * 17 15 13 20 20 H 1.48490 * 109.47245 * 329.99818 * 17 15 13 21 21 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46927 * 300.00185 * 1 2 3 23 23 H 1.08999 * 109.47400 * 59.99697 * 1 2 3 24 24 H 1.08997 * 109.46832 * 239.99959 * 2 1 3 25 25 H 1.08997 * 109.47086 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47173 * 300.00442 * 3 2 1 27 27 H 1.09006 * 109.46921 * 59.99685 * 3 2 1 28 28 H 1.08999 * 109.47662 * 305.00290 * 4 2 1 29 29 H 1.09002 * 109.47256 * 184.99716 * 4 2 1 30 30 H 1.08998 * 117.49929 * 0.02562 * 7 5 4 31 31 H 1.09008 * 117.52036 * 214.97066 * 7 5 4 32 32 H 0.96999 * 120.00044 * 359.97438 * 12 10 8 33 33 H 0.97000 * 120.00281 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 1 0.7161 -2.4086 0.6421 7 6 2.7568 -3.2336 1.1153 8 6 1.9517 -3.0661 2.4056 9 1 2.4487 -2.5891 3.2503 10 6 0.9689 -4.1527 2.7584 11 8 -0.0280 -4.3105 2.0858 12 7 1.1976 -4.9490 3.8215 13 6 0.3037 -5.9378 4.1422 14 1 -0.5839 -6.0784 3.5432 15 6 0.5393 -6.7584 5.2385 16 7 1.6215 -6.5903 5.9646 17 14 -0.6790 -8.1053 5.6759 18 1 -0.3059 -9.3581 4.9714 19 1 -0.6559 -8.3363 7.1426 20 1 -2.0437 -7.6920 5.2613 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6054 -0.2618 2.1370 29 1 3.1263 -0.6444 1.2952 30 1 3.7830 -2.8663 1.1116 31 1 2.5758 -4.1299 0.5219 32 1 1.9950 -4.8230 4.3593 33 1 1.7862 -7.1634 6.7297 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387741043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:53 Heat of formation + Delta-G solvation = -62.372282 kcal Electronic energy + Delta-G solvation = -13698.762050 eV Core-core repulsion = 11337.337276 eV Total energy + Delta-G solvation = -2361.424774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60328 -38.41805 -36.16495 -35.60130 -33.27077 -28.64690 -27.97511 -27.26551 -24.37669 -22.21972 -20.71892 -20.64414 -19.79405 -17.99764 -16.77848 -16.13140 -15.95418 -15.56675 -15.24797 -14.88168 -14.52913 -13.85444 -13.53153 -13.40737 -13.02063 -12.96327 -12.85278 -12.47283 -12.46711 -12.14286 -11.91899 -11.63379 -11.57084 -11.42404 -11.01963 -10.79598 -10.37791 -10.06705 -8.50584 -6.00329 1.34963 1.39486 1.53053 1.89105 2.27390 2.86825 3.10602 3.27600 3.84888 3.89937 4.06029 4.19459 4.21277 4.38859 4.47174 4.55927 4.81157 4.86433 4.88693 4.97754 4.99320 5.07680 5.16037 5.19903 5.31767 5.36817 5.46460 5.56902 5.59377 5.95965 6.54594 7.06968 7.51573 8.06961 8.67007 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.066873 B = 0.005681 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.601521 B = 4927.690795 C = 5117.843339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.077 4.077 5 C -0.115 4.115 6 H 0.090 0.910 7 C -0.140 4.140 8 C -0.189 4.189 9 H 0.131 0.869 10 C 0.461 3.539 11 O -0.640 6.640 12 N -0.567 5.567 13 C -0.341 4.341 14 H 0.078 0.922 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.267 1.267 20 H -0.273 1.273 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.397 0.603 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 11.895 -7.438 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.114 4.114 5 C -0.134 4.134 6 H 0.108 0.892 7 C -0.177 4.177 8 C -0.210 4.210 9 H 0.149 0.851 10 C 0.250 3.750 11 O -0.529 6.529 12 N -0.201 5.201 13 C -0.470 4.470 14 H 0.096 0.904 15 C -0.211 4.211 16 N -0.559 5.559 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.192 1.192 20 H -0.198 1.198 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.096 0.904 32 H 0.231 0.769 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.979 11.680 -7.679 14.533 hybrid contribution -0.372 -0.961 0.747 1.273 sum 3.607 10.719 -6.932 13.265 Atomic orbital electron populations 1.21917 0.96117 1.01019 1.01861 1.21060 0.95295 0.96857 0.97817 1.21803 1.01395 0.94668 1.02071 1.21277 1.01525 0.90112 0.98507 1.22444 0.99510 0.93407 0.97996 0.89179 1.23141 0.97600 1.00703 0.96274 1.22157 1.02970 1.00694 0.95173 0.85143 1.20093 0.87794 0.84899 0.82216 1.90453 1.32582 1.75041 1.54818 1.41913 1.22883 1.29279 1.26068 1.19721 1.04385 1.10645 1.12283 0.90413 1.26102 0.99141 1.00670 0.95200 1.69676 1.26835 1.40733 1.18683 0.84888 0.77766 0.77556 0.77873 1.19431 1.19196 1.19768 0.94345 0.92974 0.91747 0.90979 0.91765 0.92023 0.92694 0.91795 0.89713 0.84856 0.90401 0.76909 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.01 71.98 0.65 -2.83 16 2 C -0.09 -1.87 2.92 -10.79 -0.03 -1.90 16 3 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 4 C -0.08 -1.78 4.96 30.59 0.15 -1.63 16 5 C -0.11 -3.64 5.04 -10.80 -0.05 -3.69 16 6 H 0.09 3.37 5.91 -2.39 -0.01 3.36 16 7 C -0.14 -4.25 9.88 30.59 0.30 -3.95 16 8 C -0.19 -7.05 5.91 -11.54 -0.07 -7.12 16 9 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 10 C 0.46 23.67 7.57 87.66 0.66 24.33 16 11 O -0.64 -37.82 15.83 -3.07 -0.05 -37.86 16 12 N -0.57 -30.88 5.29 -306.97 -1.62 -32.51 16 13 C -0.34 -20.17 9.68 84.04 0.81 -19.35 16 14 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 16 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 17 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.04 1.06 6.41 -2.39 -0.02 1.05 16 22 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.61 7.88 -2.39 -0.02 1.59 16 30 H 0.13 3.01 8.03 -2.39 -0.02 2.99 16 31 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.40 20.58 7.90 -92.71 -0.73 19.84 16 33 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.84 279.56 4.55 -63.29 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.35 Total: 29.66 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 3.55 Total: -17.86 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.34 Total: -82.95 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.05 Total: -37.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.84 4.55 -63.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387741043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.919 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds