Wall clock time and date at job start Mon Mar 30 2020 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 C 1.52995 * 109.47340 * 119.99975 * 2 1 3 5 5 H 1.08999 * 115.56252 * 274.30583 * 4 2 1 6 6 C 1.53000 * 117.49901 * 128.62449 * 4 2 1 7 7 C 1.52998 * 117.50043 * 60.00037 * 4 2 1 8 8 H 1.09001 * 117.51478 * 0.02562 * 7 4 2 9 9 C 1.50692 * 117.50052 * 214.97688 * 7 4 2 10 10 O 1.21282 * 120.00217 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00138 * 179.97438 * 9 7 4 12 12 C 1.46497 * 120.00075 * 180.02562 * 11 9 7 13 13 C 1.50708 * 109.47141 * 179.97438 * 12 11 9 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08998 * 109.47313 * 59.99684 * 1 2 3 22 22 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46900 * 299.99931 * 1 2 3 24 24 H 1.08998 * 109.46997 * 240.00368 * 2 1 3 25 25 H 1.08999 * 109.47285 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47117 * 300.00620 * 3 2 1 27 27 H 1.08992 * 109.47379 * 60.00207 * 3 2 1 28 28 H 1.08995 * 117.50221 * 145.01884 * 6 4 2 29 29 H 1.09011 * 117.49888 * 359.97438 * 6 4 2 30 30 H 0.97000 * 120.00165 * 359.97438 * 11 9 7 31 31 H 1.08994 * 109.47995 * 59.99644 * 12 11 9 32 32 H 1.09000 * 109.47072 * 299.99601 * 12 11 9 33 33 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1272 -0.1061 2.1448 6 6 3.0742 -1.8312 1.0513 7 6 1.6358 -2.1852 1.4343 8 1 1.0069 -2.6349 0.6660 9 6 1.3886 -2.6663 2.8408 10 8 1.5128 -1.9016 3.7739 11 7 1.0296 -3.9464 3.0618 12 6 0.7888 -4.4140 4.4291 13 6 0.4034 -5.8707 4.4013 14 1 0.3442 -6.3957 3.4594 15 6 0.1273 -6.5334 5.5784 16 7 -0.2085 -7.8047 5.5543 17 14 0.2303 -5.6254 7.2077 18 1 1.6062 -5.7433 7.7540 19 1 -0.7356 -6.2187 8.1670 20 1 -0.0977 -4.1924 6.9974 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.8417 -1.9464 1.8166 29 1 3.3910 -2.0480 0.0310 30 1 0.9300 -4.5580 2.3155 31 1 -0.0188 -3.8334 4.8748 32 1 1.6955 -4.2890 5.0209 33 1 -0.4030 -8.2707 6.3824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388739365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:37 Heat of formation + Delta-G solvation = -37.761529 kcal Electronic energy + Delta-G solvation = -13695.262178 eV Core-core repulsion = 11334.904606 eV Total energy + Delta-G solvation = -2360.357572 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.55431 -37.27196 -34.26743 -33.26121 -32.30820 -28.18897 -27.24031 -24.29798 -22.85257 -21.59406 -19.92759 -19.50256 -17.38386 -16.17096 -15.53225 -14.79712 -14.68753 -14.23731 -14.07393 -13.27035 -13.17121 -12.73792 -12.45378 -12.27851 -12.14067 -12.05355 -11.37171 -11.17765 -11.02344 -10.78179 -10.70602 -10.13893 -9.98496 -9.93748 -9.48810 -9.17434 -8.77288 -8.12811 -6.21110 -4.23262 3.04037 3.27000 3.33600 3.42378 3.85526 4.06263 4.33877 4.69280 4.80322 4.92980 5.09076 5.14417 5.24292 5.35146 5.50285 5.56094 5.58350 5.77043 5.79323 5.82637 5.99270 6.06365 6.13608 6.24296 6.43120 6.82281 7.07796 7.25015 7.40481 8.15461 8.54332 8.76148 8.97078 9.39266 10.90913 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.060245 B = 0.005864 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.657342 B = 4773.977630 C = 4880.874545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.117 4.117 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.183 4.183 8 H 0.119 0.881 9 C 0.528 3.472 10 O -0.561 6.561 11 N -0.701 5.701 12 C 0.220 3.780 13 C -0.543 4.543 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.893 5.893 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.397 0.603 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 13.400 -11.495 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.136 4.136 5 H 0.134 0.866 6 C -0.189 4.189 7 C -0.205 4.205 8 H 0.137 0.863 9 C 0.314 3.686 10 O -0.441 6.441 11 N -0.349 5.349 12 C 0.098 3.902 13 C -0.581 4.581 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.231 0.769 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.771 13.744 -10.677 17.808 hybrid contribution -0.089 -0.196 0.567 0.607 sum 3.682 13.548 -10.110 17.300 Atomic orbital electron populations 1.21829 0.94879 1.02112 1.01609 1.20726 0.95853 0.95966 0.95874 1.21799 1.01048 0.95553 1.01701 1.22425 1.01495 0.89650 0.99989 0.86620 1.23043 0.91020 1.02281 1.02534 1.22317 1.00727 1.00602 0.96819 0.86280 1.19606 0.77280 0.82611 0.89149 1.90630 1.53406 1.55267 1.44764 1.46118 1.67366 1.09959 1.11442 1.19497 0.96115 0.95481 0.79148 1.21100 1.48551 0.92758 0.95711 0.90235 1.24794 0.93932 0.94718 0.99158 1.69881 1.45853 1.09123 1.28150 0.86816 0.78556 0.80906 0.83406 1.19837 1.20866 1.18535 0.92874 0.92463 0.92415 0.91193 0.92586 0.92778 0.92489 0.88420 0.88172 0.76929 0.95726 0.96216 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.03 37.16 0.34 -1.17 16 2 C -0.07 -0.66 3.07 -90.62 -0.28 -0.94 16 3 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 4 C -0.12 -1.50 4.66 -90.62 -0.42 -1.92 16 5 H 0.12 1.71 7.64 -51.93 -0.40 1.32 16 6 C -0.15 -1.86 9.88 -26.73 -0.26 -2.12 16 7 C -0.18 -2.65 5.39 -91.78 -0.49 -3.14 16 8 H 0.12 1.48 7.61 -51.93 -0.40 1.08 16 9 C 0.53 10.47 7.61 -10.99 -0.08 10.39 16 10 O -0.56 -13.18 16.26 5.56 0.09 -13.09 16 11 N -0.70 -14.73 5.55 -61.47 -0.34 -15.07 16 12 C 0.22 5.54 4.50 -5.19 -0.02 5.52 16 13 C -0.54 -15.14 9.83 -34.44 -0.34 -15.48 16 14 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 17 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.61 7.29 -51.93 -0.38 0.23 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.10 0.98 8.05 -51.92 -0.42 0.56 16 30 H 0.40 7.37 8.32 -40.82 -0.34 7.03 16 31 H 0.02 0.66 7.20 -51.93 -0.37 0.28 16 32 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -31.66 279.19 -6.48 -38.15 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.22 Total: 2.39 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.33 Total: -7.68 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.43 Total: -41.02 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.66 -6.48 -38.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388739365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.388 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds