Wall clock time and date at job start Mon Mar 30 2020 02:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 C 1.52995 * 109.47340 * 119.99975 * 2 1 3 5 5 H 1.08999 * 115.56252 * 274.30583 * 4 2 1 6 6 C 1.53000 * 117.49901 * 128.62449 * 4 2 1 7 7 C 1.52998 * 117.50043 * 60.00037 * 4 2 1 8 8 H 1.09001 * 117.51478 * 0.02562 * 7 4 2 9 9 C 1.50692 * 117.50052 * 214.97688 * 7 4 2 10 10 O 1.21282 * 120.00217 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00138 * 179.97438 * 9 7 4 12 12 C 1.46497 * 120.00075 * 180.02562 * 11 9 7 13 13 C 1.50708 * 109.47141 * 179.97438 * 12 11 9 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08998 * 109.47313 * 59.99684 * 1 2 3 22 22 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46900 * 299.99931 * 1 2 3 24 24 H 1.08998 * 109.46997 * 240.00368 * 2 1 3 25 25 H 1.08999 * 109.47285 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47117 * 300.00620 * 3 2 1 27 27 H 1.08992 * 109.47379 * 60.00207 * 3 2 1 28 28 H 1.08995 * 117.50221 * 145.01884 * 6 4 2 29 29 H 1.09011 * 117.49888 * 359.97438 * 6 4 2 30 30 H 0.97000 * 120.00165 * 359.97438 * 11 9 7 31 31 H 1.08994 * 109.47995 * 59.99644 * 12 11 9 32 32 H 1.09000 * 109.47072 * 299.99601 * 12 11 9 33 33 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1272 -0.1061 2.1448 6 6 3.0742 -1.8312 1.0513 7 6 1.6358 -2.1852 1.4343 8 1 1.0069 -2.6349 0.6660 9 6 1.3886 -2.6663 2.8408 10 8 1.5128 -1.9016 3.7739 11 7 1.0296 -3.9464 3.0618 12 6 0.7888 -4.4140 4.4291 13 6 0.4034 -5.8707 4.4013 14 1 0.3442 -6.3957 3.4594 15 6 0.1273 -6.5334 5.5784 16 7 -0.2085 -7.8047 5.5543 17 14 0.2303 -5.6254 7.2077 18 1 1.6062 -5.7433 7.7540 19 1 -0.7356 -6.2187 8.1670 20 1 -0.0977 -4.1924 6.9974 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.8417 -1.9464 1.8166 29 1 3.3910 -2.0480 0.0310 30 1 0.9300 -4.5580 2.3155 31 1 -0.0188 -3.8334 4.8748 32 1 1.6955 -4.2890 5.0209 33 1 -0.4030 -8.2707 6.3824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388739365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:36 Heat of formation + Delta-G solvation = -58.971868 kcal Electronic energy + Delta-G solvation = -13696.181927 eV Core-core repulsion = 11334.904606 eV Total energy + Delta-G solvation = -2361.277321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.99109 -38.50591 -36.16446 -34.45053 -34.14133 -30.18367 -27.98699 -25.83041 -23.82394 -23.38911 -21.36059 -20.60829 -19.18213 -17.91406 -17.11312 -16.29830 -16.23784 -15.69265 -15.32351 -14.85617 -14.44371 -14.18980 -13.96651 -13.55521 -13.36610 -13.12052 -12.98033 -12.73508 -12.14636 -12.02672 -11.95989 -11.69448 -11.53686 -11.18490 -11.00029 -10.94425 -10.75467 -9.97002 -8.42532 -6.49858 1.30393 1.32585 1.45311 1.56345 2.25721 2.38824 2.88449 2.93596 3.68591 3.79398 3.89234 4.13060 4.24834 4.42307 4.47961 4.69145 4.73114 4.86647 4.88466 4.97609 4.98699 5.05815 5.09895 5.22755 5.25293 5.30671 5.46990 5.48889 5.57142 6.06268 6.50822 6.81830 7.12864 7.37875 8.72293 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.060245 B = 0.005864 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.657342 B = 4773.977630 C = 4880.874545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.113 4.113 5 H 0.089 0.911 6 C -0.133 4.133 7 C -0.194 4.194 8 H 0.146 0.854 9 C 0.525 3.475 10 O -0.602 6.602 11 N -0.702 5.702 12 C 0.231 3.769 13 C -0.548 4.548 14 H 0.060 0.940 15 C 0.028 3.972 16 N -0.930 5.930 17 Si 0.937 3.063 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.263 1.263 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.409 0.591 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 14.503 -12.848 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.131 4.131 5 H 0.108 0.892 6 C -0.170 4.170 7 C -0.215 4.215 8 H 0.163 0.837 9 C 0.313 3.687 10 O -0.485 6.485 11 N -0.351 5.351 12 C 0.107 3.893 13 C -0.586 4.586 14 H 0.078 0.922 15 C -0.172 4.172 16 N -0.568 5.568 17 Si 0.761 3.239 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.188 1.188 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.245 0.755 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.343 14.844 -12.064 19.615 hybrid contribution -0.261 -0.539 0.940 1.114 sum 4.083 14.305 -11.124 18.576 Atomic orbital electron populations 1.21851 0.95101 1.01849 1.01794 1.20758 0.95603 0.96494 0.94987 1.21798 1.01408 0.94799 1.02029 1.22487 1.01516 0.88733 1.00410 0.89235 1.23199 0.89257 1.00544 1.04037 1.22272 1.03342 1.02216 0.93649 0.83661 1.20512 0.75561 0.81454 0.91151 1.90604 1.54937 1.56100 1.46830 1.45999 1.67855 1.11025 1.10183 1.19105 0.94972 0.93730 0.81461 1.21279 1.48276 0.93931 0.95126 0.92207 1.25588 0.93571 0.95416 1.02669 1.69976 1.46893 1.10538 1.29440 0.85860 0.79177 0.79411 0.79455 1.18884 1.19527 1.18786 0.90933 0.92956 0.94036 0.89044 0.92056 0.91076 0.93582 0.89678 0.84506 0.75516 0.97139 0.97211 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.03 71.98 0.65 -2.06 16 2 C -0.06 -1.04 3.07 -10.79 -0.03 -1.07 16 3 C -0.14 -2.18 9.18 71.98 0.66 -1.52 16 4 C -0.11 -2.69 4.66 -10.80 -0.05 -2.74 16 5 H 0.09 2.64 7.64 -2.39 -0.02 2.62 16 6 C -0.13 -2.90 9.88 30.59 0.30 -2.60 16 7 C -0.19 -5.25 5.39 -11.54 -0.06 -5.31 16 8 H 0.15 3.18 7.61 -2.39 -0.02 3.16 16 9 C 0.52 20.67 7.61 87.65 0.67 21.34 16 10 O -0.60 -28.66 16.26 -3.04 -0.05 -28.71 16 11 N -0.70 -29.44 5.55 -466.80 -2.59 -32.03 16 12 C 0.23 11.75 4.50 85.64 0.39 12.14 16 13 C -0.55 -30.92 9.83 25.60 0.25 -30.66 16 14 H 0.06 3.53 7.84 -2.92 -0.02 3.50 16 15 C 0.03 1.61 5.47 84.65 0.46 2.07 16 16 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 17 Si 0.94 44.77 27.47 68.60 1.88 46.65 16 18 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 0.99 7.29 -2.39 -0.02 0.98 16 23 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.09 1.25 7.90 -2.39 -0.02 1.23 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.14 2.03 8.05 -2.38 -0.02 2.01 16 30 H 0.41 15.02 8.32 -92.71 -0.77 14.25 16 31 H 0.01 0.57 7.20 -2.39 -0.02 0.56 16 32 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -68.48 279.19 3.03 -65.44 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.26 Total: 14.75 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.23 Total: -10.41 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -2.29 Total: -87.72 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -68.48 3.03 -65.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388739365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.469 kcal (2) G-P(sol) polarization free energy of solvation -68.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds