Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46958 * 2 1 4 4 H 1.09001 * 115.55713 * 330.66740 * 3 2 1 5 5 C 1.53004 * 117.51703 * 116.37413 * 3 2 1 6 6 C 1.52997 * 60.00244 * 107.47674 * 5 3 2 7 7 H 1.09001 * 117.51698 * 107.47983 * 6 5 3 8 8 C 1.50698 * 117.49763 * 252.51018 * 6 5 3 9 9 O 1.21279 * 120.00322 * 68.62413 * 8 6 5 10 10 N 1.34777 * 119.99969 * 248.62080 * 8 6 5 11 11 C 1.46507 * 119.99744 * 359.97438 * 10 8 6 12 12 C 1.46497 * 120.00178 * 180.02562 * 10 8 6 13 13 C 1.50694 * 109.47115 * 270.00180 * 12 10 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47406 * 300.00344 * 1 2 3 23 23 H 1.09007 * 109.46829 * 60.00067 * 1 2 3 24 24 H 1.09006 * 109.47258 * 239.99883 * 2 1 3 25 25 H 1.09000 * 109.46983 * 120.00260 * 2 1 3 26 26 H 1.09001 * 117.49751 * 359.97438 * 5 3 2 27 27 H 1.09004 * 117.49721 * 214.97306 * 5 3 2 28 28 H 1.09000 * 109.47436 * 269.99730 * 11 10 8 29 29 H 1.09000 * 109.47148 * 30.00599 * 11 10 8 30 30 H 1.09004 * 109.46943 * 149.99854 * 11 10 8 31 31 H 1.09007 * 109.47078 * 149.99819 * 12 10 8 32 32 H 1.09003 * 109.46733 * 30.00541 * 12 10 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1716 -0.4817 5 6 2.8439 1.9080 1.2157 6 6 3.5502 1.6578 -0.1182 7 1 3.8921 2.5283 -0.6781 8 6 4.4214 0.4329 -0.2252 9 8 3.9194 -0.6711 -0.2156 10 7 5.7585 0.5642 -0.3317 11 6 6.3649 1.8978 -0.3439 12 6 6.6055 -0.6265 -0.4362 13 6 7.0126 -1.0761 0.9433 14 1 6.6746 -0.5294 1.8112 15 6 7.8174 -2.1850 1.0974 16 7 8.2294 -2.8506 0.0406 17 14 8.3226 -2.7419 2.8074 18 1 9.1811 -3.9490 2.7014 19 1 9.0780 -1.6542 3.4793 20 1 7.1099 -3.0657 3.6010 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0092 1.1867 2.0160 27 1 2.7211 2.9434 1.5338 28 1 6.4310 2.2576 -1.3707 29 1 5.7506 2.5816 0.2419 30 1 7.3644 1.8465 0.0882 31 1 7.4959 -0.3891 -1.0186 32 1 6.0508 -1.4247 -0.9297 33 1 8.7960 -3.6305 0.1491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395757334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = -20.205300 kcal Electronic energy + Delta-G solvation = -14209.842567 eV Core-core repulsion = 11850.246290 eV Total energy + Delta-G solvation = -2359.596277 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49702 -36.54737 -34.61750 -32.59937 -31.68900 -27.97709 -25.86588 -24.21817 -23.51385 -21.79725 -20.34830 -18.03662 -16.46646 -16.46445 -15.20287 -14.84776 -14.27015 -14.12299 -13.78495 -13.34027 -12.59037 -12.31800 -12.11909 -11.94453 -11.89888 -11.45070 -11.21602 -11.07626 -10.90165 -10.76937 -10.54902 -10.12291 -9.91430 -9.65877 -9.57151 -8.62981 -8.41303 -7.57177 -6.02109 -4.06847 3.25863 3.33018 3.37202 3.40779 3.93635 4.25707 4.46185 4.84919 5.10090 5.15983 5.31282 5.40139 5.49917 5.60141 5.72471 5.75961 5.86770 5.96108 5.98974 6.17642 6.23305 6.27270 6.35895 6.58099 6.91187 7.10954 7.47652 7.60064 7.94758 8.26438 8.49504 8.93246 9.18160 9.58248 11.05898 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.008166 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.667695 B = 3428.091000 C = 3708.780401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.119 4.119 4 H 0.104 0.896 5 C -0.155 4.155 6 C -0.188 4.188 7 H 0.115 0.885 8 C 0.532 3.468 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.085 3.915 12 C 0.246 3.754 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.286 1.286 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 10.672 -0.145 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.138 4.138 4 H 0.122 0.878 5 C -0.192 4.192 6 C -0.210 4.210 7 H 0.133 0.867 8 C 0.319 3.681 9 O -0.415 6.415 10 N -0.333 5.333 11 C -0.059 4.059 12 C 0.126 3.874 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.212 1.212 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.248 9.907 -0.209 13.554 hybrid contribution 0.581 -0.127 0.915 1.091 sum -8.667 9.780 0.706 13.087 Atomic orbital electron populations 1.21842 0.96938 1.01161 1.00841 1.21154 0.93443 0.93315 1.04402 1.22387 0.91253 0.99072 1.01044 0.87754 1.23018 1.02912 1.02201 0.91106 1.22394 0.95226 0.99773 1.03562 0.86721 1.19430 0.82423 0.88975 0.77280 1.90649 1.73050 1.27271 1.50483 1.48102 1.06022 1.08203 1.70952 1.21610 0.99583 0.84640 1.00048 1.19269 0.88922 0.81857 0.97309 1.21407 1.30329 1.12039 0.92666 0.92566 1.24942 0.95997 0.96119 0.97079 1.69927 1.35461 1.19243 1.28844 0.86560 0.78472 0.78029 0.84368 1.21152 1.20262 1.20199 0.92975 0.93317 0.93364 0.90202 0.91129 0.88319 0.88522 0.93991 0.92321 0.90954 0.95106 0.93860 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.87 37.16 0.37 -1.49 16 2 C -0.09 -1.36 4.47 -26.73 -0.12 -1.48 16 3 C -0.12 -1.68 5.74 -90.62 -0.52 -2.20 16 4 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 5 C -0.15 -2.15 9.88 -26.73 -0.26 -2.41 16 6 C -0.19 -2.97 4.80 -91.77 -0.44 -3.41 16 7 H 0.11 1.52 7.26 -51.93 -0.38 1.14 16 8 C 0.53 11.41 7.44 -10.99 -0.08 11.33 16 9 O -0.54 -13.46 12.68 5.56 0.07 -13.38 16 10 N -0.60 -13.24 2.86 -182.95 -0.52 -13.77 16 11 C 0.09 1.42 10.01 59.85 0.60 2.02 16 12 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16 13 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16 25 H 0.07 1.28 7.30 -51.93 -0.38 0.90 16 26 H 0.10 1.54 8.03 -51.93 -0.42 1.12 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 30 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -32.31 276.52 -6.66 -38.96 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.18 Total: -1.87 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.91 Total: -4.96 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.21 Total: -40.05 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.31 -6.66 -38.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395757334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.758 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds