Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46958 * 2 1 4 4 H 1.09001 * 115.55713 * 330.66740 * 3 2 1 5 5 C 1.53004 * 117.51703 * 116.37413 * 3 2 1 6 6 C 1.52997 * 60.00244 * 107.47674 * 5 3 2 7 7 H 1.09001 * 117.51698 * 107.47983 * 6 5 3 8 8 C 1.50698 * 117.49763 * 252.51018 * 6 5 3 9 9 O 1.21279 * 120.00322 * 68.62413 * 8 6 5 10 10 N 1.34777 * 119.99969 * 248.62080 * 8 6 5 11 11 C 1.46507 * 119.99744 * 359.97438 * 10 8 6 12 12 C 1.46497 * 120.00178 * 180.02562 * 10 8 6 13 13 C 1.50694 * 109.47115 * 270.00180 * 12 10 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47406 * 300.00344 * 1 2 3 23 23 H 1.09007 * 109.46829 * 60.00067 * 1 2 3 24 24 H 1.09006 * 109.47258 * 239.99883 * 2 1 3 25 25 H 1.09000 * 109.46983 * 120.00260 * 2 1 3 26 26 H 1.09001 * 117.49751 * 359.97438 * 5 3 2 27 27 H 1.09004 * 117.49721 * 214.97306 * 5 3 2 28 28 H 1.09000 * 109.47436 * 269.99730 * 11 10 8 29 29 H 1.09000 * 109.47148 * 30.00599 * 11 10 8 30 30 H 1.09004 * 109.46943 * 149.99854 * 11 10 8 31 31 H 1.09007 * 109.47078 * 149.99819 * 12 10 8 32 32 H 1.09003 * 109.46733 * 30.00541 * 12 10 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1716 -0.4817 5 6 2.8439 1.9080 1.2157 6 6 3.5502 1.6578 -0.1182 7 1 3.8921 2.5283 -0.6781 8 6 4.4214 0.4329 -0.2252 9 8 3.9194 -0.6711 -0.2156 10 7 5.7585 0.5642 -0.3317 11 6 6.3649 1.8978 -0.3439 12 6 6.6055 -0.6265 -0.4362 13 6 7.0126 -1.0761 0.9433 14 1 6.6746 -0.5294 1.8112 15 6 7.8174 -2.1850 1.0974 16 7 8.2294 -2.8506 0.0406 17 14 8.3226 -2.7419 2.8074 18 1 9.1811 -3.9490 2.7014 19 1 9.0780 -1.6542 3.4793 20 1 7.1099 -3.0657 3.6010 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0092 1.1867 2.0160 27 1 2.7211 2.9434 1.5338 28 1 6.4310 2.2576 -1.3707 29 1 5.7506 2.5816 0.2419 30 1 7.3644 1.8465 0.0882 31 1 7.4959 -0.3891 -1.0186 32 1 6.0508 -1.4247 -0.9297 33 1 8.7960 -3.6305 0.1491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395757334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = -40.857127 kcal Electronic energy + Delta-G solvation = -14210.738097 eV Core-core repulsion = 11850.246290 eV Total energy + Delta-G solvation = -2360.491807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03415 -37.96284 -36.39998 -34.73819 -32.87344 -29.99207 -27.38618 -26.03805 -24.64059 -23.48361 -21.57889 -19.61567 -18.69409 -17.95081 -16.98856 -16.34330 -16.04033 -15.67952 -14.98419 -14.79892 -14.27285 -13.95595 -13.68038 -13.46801 -13.17870 -13.07303 -12.94000 -12.67036 -12.56882 -12.18591 -12.18177 -11.88052 -11.76169 -11.07660 -10.84364 -10.66428 -10.29361 -9.39042 -8.24458 -6.40081 1.34005 1.38694 1.46141 1.73654 2.29603 2.45481 2.95847 3.04308 3.64465 3.83963 4.00150 4.18362 4.38715 4.46536 4.54857 4.67215 4.71341 4.81258 4.86260 4.94490 4.99458 5.08765 5.21177 5.21533 5.28635 5.36179 5.54842 5.67528 5.85241 6.04343 6.67672 6.81969 7.26392 7.53123 8.82361 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.008166 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.667695 B = 3428.091000 C = 3708.780401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.113 4.113 4 H 0.145 0.855 5 C -0.138 4.138 6 C -0.197 4.197 7 H 0.152 0.848 8 C 0.517 3.483 9 O -0.589 6.589 10 N -0.612 5.612 11 C 0.081 3.919 12 C 0.260 3.740 13 C -0.544 4.544 14 H 0.051 0.949 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.276 1.276 19 H -0.259 1.259 20 H -0.278 1.278 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.022 0.978 32 H -0.004 1.004 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 13.314 0.925 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.131 4.131 4 H 0.163 0.837 5 C -0.175 4.175 6 C -0.218 4.218 7 H 0.170 0.830 8 C 0.307 3.693 9 O -0.470 6.470 10 N -0.343 5.343 11 C -0.061 4.061 12 C 0.138 3.862 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.201 1.201 19 H -0.183 1.183 20 H -0.204 1.204 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.160 0.840 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.014 0.986 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.092 12.603 0.858 16.168 hybrid contribution 0.830 -0.981 0.533 1.391 sum -9.262 11.622 1.391 14.926 Atomic orbital electron populations 1.21766 0.93909 1.01599 1.02612 1.21044 0.96071 0.94383 1.00978 1.22565 0.90561 0.98446 1.01518 0.83689 1.23134 1.00938 1.03936 0.89530 1.22371 0.95187 0.97990 1.06205 0.82996 1.20548 0.82517 0.90461 0.75807 1.90629 1.73952 1.29956 1.52478 1.48161 1.06313 1.08776 1.71030 1.21891 0.99475 0.82323 1.02424 1.18724 0.88479 0.82992 0.95977 1.21670 1.30704 1.12668 0.93225 0.93033 1.25899 0.95805 0.96020 1.01533 1.70051 1.35920 1.19673 1.31244 0.85452 0.78121 0.78228 0.78925 1.20106 1.18326 1.20377 0.93388 0.91598 0.91342 0.93711 0.94768 0.90961 0.84012 0.91321 0.88784 0.91817 0.96031 0.98619 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.87 71.98 0.71 -2.56 16 2 C -0.09 -2.78 4.47 30.59 0.14 -2.65 16 3 C -0.11 -2.87 5.74 -10.79 -0.06 -2.93 16 4 H 0.15 2.59 8.07 -2.39 -0.02 2.57 16 5 C -0.14 -3.38 9.88 30.59 0.30 -3.08 16 6 C -0.20 -5.72 4.80 -11.54 -0.06 -5.78 16 7 H 0.15 3.29 7.26 -2.39 -0.02 3.27 16 8 C 0.52 22.55 7.44 87.66 0.65 23.21 16 9 O -0.59 -31.34 12.68 -3.03 -0.04 -31.38 16 10 N -0.61 -27.35 2.86 -851.12 -2.43 -29.78 16 11 C 0.08 2.54 10.01 127.77 1.28 3.82 16 12 C 0.26 14.65 5.16 85.63 0.44 15.09 16 13 C -0.54 -32.48 9.39 25.60 0.24 -32.24 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.37 5.46 84.66 0.46 0.84 16 16 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 17 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 24 H 0.04 1.72 6.92 -2.38 -0.02 1.70 16 25 H 0.03 1.30 7.30 -2.39 -0.02 1.28 16 26 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 27 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 2.28 6.64 -2.39 -0.02 2.27 16 30 H 0.06 2.10 8.07 -2.38 -0.02 2.08 16 31 H 0.02 1.23 8.07 -2.38 -0.02 1.21 16 32 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -75.21 276.52 5.02 -70.19 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.07 Total: 6.70 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.11 Total: -6.28 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -2.15 Total: -87.11 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.04 Total: -31.38 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.21 5.02 -70.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395757334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.336 kcal (2) G-P(sol) polarization free energy of solvation -75.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds