Wall clock time and date at job start Mon Mar 30 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47407 * 2 1 4 4 H 1.09004 * 115.56709 * 29.30779 * 3 2 1 5 5 C 1.53000 * 117.50008 * 243.62046 * 3 2 1 6 6 C 1.52997 * 60.00347 * 252.51154 * 5 3 2 7 7 H 1.08999 * 117.52022 * 107.47599 * 6 5 3 8 8 C 1.50702 * 117.49714 * 252.51395 * 6 5 3 9 9 O 1.21277 * 120.00599 * 68.61769 * 8 6 5 10 10 N 1.34778 * 119.99457 * 248.61531 * 8 6 5 11 11 C 1.46499 * 120.00219 * 0.02562 * 10 8 6 12 12 C 1.46497 * 119.99690 * 180.02562 * 10 8 6 13 13 C 1.50699 * 109.47226 * 90.00271 * 12 10 8 14 14 H 1.07995 * 120.00270 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99766 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00411 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99782 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47436 * 60.00069 * 17 15 13 19 19 H 1.48506 * 109.47356 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47106 * 299.99896 * 17 15 13 21 21 H 1.09004 * 109.46886 * 300.00550 * 1 2 3 22 22 H 1.09000 * 109.46731 * 60.00047 * 1 2 3 23 23 H 1.08990 * 109.47578 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46886 * 239.99450 * 2 1 3 25 25 H 1.09002 * 109.46769 * 120.00487 * 2 1 3 26 26 H 1.09002 * 117.49696 * 0.02562 * 5 3 2 27 27 H 1.09002 * 117.50343 * 145.02258 * 5 3 2 28 28 H 1.09000 * 109.46934 * 89.99955 * 11 10 8 29 29 H 1.09005 * 109.46950 * 209.99463 * 11 10 8 30 30 H 1.09004 * 109.47160 * 329.99739 * 11 10 8 31 31 H 1.09007 * 109.47453 * 210.00224 * 12 10 8 32 32 H 1.09001 * 109.47460 * 329.99377 * 12 10 8 33 33 H 0.97003 * 119.99969 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7717 0.1965 8 6 4.0230 2.8618 0.8914 9 8 3.2161 3.6166 1.3914 10 7 5.3426 3.0999 1.0272 11 6 6.3174 2.1885 0.4227 12 6 5.8022 4.2701 1.7792 13 6 5.9766 3.8986 3.2293 14 1 5.7658 2.8917 3.5579 15 6 6.4053 4.8443 4.1364 16 7 6.6616 6.0707 3.7363 17 14 6.6208 4.3841 5.9339 18 1 7.6242 3.2955 6.0493 19 1 7.0868 5.5703 6.6963 20 1 5.3221 3.9208 6.4854 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0275 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.0093 1.1858 -2.0159 27 1 2.7216 2.9426 -1.5344 28 1 6.5470 2.5214 -0.5895 29 1 7.2296 2.1843 1.0195 30 1 5.9010 1.1818 0.3885 31 1 6.7551 4.6110 1.3744 32 1 5.0652 5.0688 1.6948 33 1 6.9628 6.7361 4.3746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395757346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:12 Heat of formation + Delta-G solvation = -45.250829 kcal Electronic energy + Delta-G solvation = -13955.592240 eV Core-core repulsion = 11594.909907 eV Total energy + Delta-G solvation = -2360.682332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.96649 -38.09975 -36.53885 -34.73578 -32.86832 -30.00687 -27.41478 -26.12084 -24.66566 -23.51436 -21.35427 -19.81657 -18.72958 -18.02806 -17.20300 -16.36729 -16.16451 -15.49130 -15.21264 -14.75653 -14.30141 -13.81768 -13.54614 -13.43122 -13.31568 -13.14108 -12.94552 -12.76802 -12.57170 -12.22248 -12.12601 -11.88825 -11.75938 -11.17124 -10.87436 -10.66629 -10.57997 -9.44605 -8.25056 -6.40875 1.34449 1.39434 1.46773 1.67325 2.28628 2.42223 2.92182 3.03917 3.62874 3.80806 3.89830 4.16177 4.29739 4.46062 4.53924 4.59733 4.71654 4.79016 4.88416 4.94613 5.00374 5.06264 5.17544 5.19865 5.27639 5.33126 5.52277 5.53651 5.81832 6.02730 6.66150 6.76762 7.24941 7.46417 8.82006 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.007089 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.376456 B = 3948.599900 C = 4234.704061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.127 4.127 4 H 0.082 0.918 5 C -0.127 4.127 6 C -0.194 4.194 7 H 0.151 0.849 8 C 0.518 3.482 9 O -0.605 6.605 10 N -0.608 5.608 11 C 0.081 3.919 12 C 0.258 3.742 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.971 3.029 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.279 1.279 21 H 0.040 0.960 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.143 0.857 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.025 0.975 32 H -0.005 1.005 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -14.245 -10.103 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.146 4.146 4 H 0.100 0.900 5 C -0.164 4.164 6 C -0.215 4.215 7 H 0.168 0.832 8 C 0.308 3.692 9 O -0.488 6.488 10 N -0.338 5.338 11 C -0.061 4.061 12 C 0.136 3.864 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.794 3.206 18 H -0.182 1.182 19 H -0.200 1.200 20 H -0.204 1.204 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.013 0.987 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.296 -13.675 -9.796 17.635 hybrid contribution 0.296 0.682 1.221 1.430 sum -5.000 -12.993 -8.574 16.350 Atomic orbital electron populations 1.21744 0.94868 1.02377 1.01652 1.21147 0.96507 0.91557 1.03126 1.22504 0.90736 0.99738 1.01595 0.90013 1.23177 0.99996 1.03071 0.90160 1.22369 0.98292 0.97862 1.02928 0.83187 1.20542 0.82009 0.86580 0.80060 1.90606 1.55035 1.51367 1.51760 1.48137 1.06182 1.27366 1.52147 1.21939 0.92471 0.93685 0.98033 1.18769 0.93391 0.83648 0.90555 1.21669 1.45447 0.97045 0.94347 0.92964 1.25907 0.94644 0.94592 1.04079 1.70051 1.46197 1.03704 1.36884 0.85430 0.78620 0.78247 0.78282 1.18239 1.20048 1.20427 0.94031 0.92197 0.90931 0.89125 0.91675 0.83915 0.90182 0.91189 0.91615 0.88690 0.95719 0.98735 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.87 71.98 0.71 -1.90 16 2 C -0.09 -1.63 6.21 30.59 0.19 -1.44 16 3 C -0.13 -3.43 5.25 -10.80 -0.06 -3.48 16 4 H 0.08 2.79 7.60 -2.38 -0.02 2.77 16 5 C -0.13 -2.99 9.88 30.59 0.30 -2.68 16 6 C -0.19 -5.81 5.01 -11.54 -0.06 -5.86 16 7 H 0.15 3.49 6.44 -2.39 -0.02 3.47 16 8 C 0.52 23.24 7.46 87.66 0.65 23.89 16 9 O -0.61 -33.83 15.84 -3.02 -0.05 -33.88 16 10 N -0.61 -27.47 2.86 -851.12 -2.43 -29.90 16 11 C 0.08 2.53 10.27 127.77 1.31 3.84 16 12 C 0.26 14.64 5.16 85.63 0.44 15.08 16 13 C -0.55 -32.78 9.39 25.60 0.24 -32.54 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 17 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 21 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 1.25 7.88 -2.39 -0.02 1.23 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.14 2.14 8.03 -2.39 -0.02 2.12 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.14 8.07 -2.38 -0.02 2.13 16 30 H 0.09 2.26 5.99 -2.39 -0.01 2.25 16 31 H 0.02 1.41 8.07 -2.38 -0.02 1.39 16 32 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -76.67 281.27 5.10 -71.57 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.07 Total: 5.86 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.20 Total: -4.24 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -2.15 Total: -87.23 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.05 Total: -33.88 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.67 5.10 -71.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395757346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.320 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds