Wall clock time and date at job start Mon Mar 30 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47188 * 2 1 4 4 C 1.50709 * 109.47016 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99760 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99676 * 179.97438 * 4 3 2 7 7 C 1.47420 * 125.65167 * 0.04343 * 6 4 3 8 8 C 1.54913 * 104.82995 * 204.09308 * 7 6 4 9 9 C 1.55156 * 101.58420 * 322.98729 * 8 7 6 10 10 H 1.09006 * 110.87308 * 277.07550 * 9 8 7 11 11 C 1.50695 * 110.72389 * 153.86488 * 9 8 7 12 12 H 1.07995 * 120.00496 * 246.48021 * 11 9 8 13 13 C 1.37880 * 119.99572 * 66.47955 * 11 9 8 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.47025 * 125.64649 * 179.97438 * 6 4 3 20 20 H 1.09003 * 109.47482 * 300.00248 * 1 2 3 21 21 H 1.09004 * 109.46986 * 60.00379 * 1 2 3 22 22 H 1.08996 * 109.47368 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47181 * 239.99305 * 2 1 3 24 24 H 1.08997 * 109.46990 * 120.00024 * 2 1 3 25 25 H 1.08996 * 109.47536 * 60.00037 * 3 2 1 26 26 H 1.08996 * 109.47492 * 299.99202 * 3 2 1 27 27 H 1.08997 * 110.36676 * 322.92521 * 7 6 4 28 28 H 1.08990 * 110.37077 * 85.14546 * 7 6 4 29 29 H 1.09003 * 111.00005 * 204.91481 * 8 7 6 30 30 H 1.09001 * 111.00443 * 81.06446 * 8 7 6 31 31 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 32 32 H 1.09009 * 109.88220 * 59.55751 * 19 6 4 33 33 H 1.09008 * 110.01374 * 298.46979 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.6131 3.9527 0.0001 8 6 4.6949 4.8774 -0.6117 9 6 5.9950 4.2656 -0.0263 10 1 6.1809 4.6391 0.9807 11 6 7.1706 4.5519 -0.9246 12 1 7.6663 3.7426 -1.4399 13 6 7.6133 5.8474 -1.0887 14 7 7.0100 6.8330 -0.4610 15 14 9.0700 6.2025 -2.2028 16 1 8.7589 5.7521 -3.5833 17 1 10.2646 5.4759 -1.7025 18 1 9.3444 7.6620 -2.2089 19 6 5.6840 2.7543 0.0013 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 2.7138 3.9620 -0.6157 28 1 3.3781 4.2629 1.0181 29 1 4.5629 5.9068 -0.2783 30 1 4.6903 4.8173 -1.7000 31 1 6.2532 6.6486 0.1173 32 1 6.1048 2.2732 -0.8818 33 1 6.1026 2.3059 0.9024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397775692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:16 Heat of formation + Delta-G solvation = -61.430556 kcal Electronic energy + Delta-G solvation = -14089.911800 eV Core-core repulsion = 11728.527862 eV Total energy + Delta-G solvation = -2361.383938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.54610 -37.04741 -34.28161 -33.32556 -30.32084 -28.72114 -27.58569 -24.39328 -22.77452 -21.46615 -19.94784 -18.69169 -17.17638 -16.38826 -15.90693 -15.32020 -14.73152 -13.78449 -13.73095 -13.25312 -12.88018 -12.51759 -12.25910 -12.08960 -11.76211 -11.58314 -11.38936 -11.18089 -10.94474 -10.74952 -10.73643 -10.15372 -9.98466 -9.76138 -9.39212 -8.61696 -8.45070 -8.08316 -6.43102 -4.16046 3.01962 3.41475 3.42413 3.50552 3.61433 4.47881 4.79690 4.91572 4.99696 5.26271 5.37441 5.44774 5.49473 5.61128 5.67711 5.74019 5.81577 5.93193 6.09640 6.13725 6.17831 6.30410 6.50128 6.68221 6.76271 6.87681 7.06643 7.45075 8.05790 8.09010 8.34628 8.58699 8.78121 9.55208 10.95136 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.068157 B = 0.006415 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.720073 B = 4363.584608 C = 4573.412055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.518 3.482 5 O -0.556 6.556 6 N -0.613 5.613 7 C 0.095 3.905 8 C -0.126 4.126 9 C 0.027 3.973 10 H 0.033 0.967 11 C -0.594 4.594 12 H 0.053 0.947 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 1.068 2.932 16 H -0.288 1.288 17 H -0.287 1.287 18 H -0.282 1.282 19 C 0.117 3.883 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.271 0.729 32 H 0.062 0.938 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 -6.043 0.746 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.175 4.175 4 C 0.307 3.693 5 O -0.436 6.436 6 N -0.346 5.346 7 C -0.028 4.028 8 C -0.164 4.164 9 C 0.008 3.992 10 H 0.051 0.949 11 C -0.633 4.633 12 H 0.071 0.929 13 C -0.181 4.181 14 N -0.545 5.545 15 Si 0.896 3.104 16 H -0.214 1.214 17 H -0.214 1.214 18 H -0.208 1.208 19 C -0.004 4.004 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.681 -5.438 0.167 11.105 hybrid contribution -1.015 -1.120 0.614 1.631 sum -10.696 -6.557 0.781 12.570 Atomic orbital electron populations 1.21792 0.95725 1.01676 1.01694 1.21270 0.94925 0.95044 1.03438 1.21675 0.92314 0.99594 1.03961 1.20361 0.89875 0.82527 0.76583 1.90653 1.70681 1.30824 1.51404 1.48763 1.08772 1.05602 1.71485 1.22460 0.97280 0.82869 1.00150 1.23007 0.95112 0.97749 1.00566 1.19879 0.93689 0.88488 0.97103 0.94917 1.21874 1.15354 0.95707 1.30319 0.92918 1.25805 1.01658 0.92315 0.98369 1.70827 1.22028 1.33945 1.27731 0.83543 0.75111 0.76162 0.75546 1.21417 1.21362 1.20750 1.22174 0.77945 0.99860 1.00442 0.92778 0.92750 0.92585 0.91339 0.91385 0.89369 0.89281 0.91885 0.92212 0.90891 0.91430 0.91794 0.91957 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.11 -1.33 5.22 -26.74 -0.14 -1.47 16 3 C -0.14 -1.79 4.71 -27.88 -0.13 -1.92 16 4 C 0.52 9.56 7.85 -10.98 -0.09 9.47 16 5 O -0.56 -12.17 16.31 5.56 0.09 -12.08 16 6 N -0.61 -11.89 3.33 -170.52 -0.57 -12.46 16 7 C 0.10 1.63 6.69 -2.53 -0.02 1.61 16 8 C -0.13 -2.65 5.87 -24.58 -0.14 -2.79 16 9 C 0.03 0.66 2.43 -89.94 -0.22 0.44 16 10 H 0.03 0.83 7.91 -51.93 -0.41 0.42 16 11 C -0.59 -16.12 8.47 -34.44 -0.29 -16.41 16 12 H 0.05 1.44 7.53 -52.49 -0.40 1.05 16 13 C 0.02 0.63 5.36 -17.82 -0.10 0.54 16 14 N -0.91 -25.99 13.49 55.43 0.75 -25.25 16 15 Si 1.07 24.44 29.90 -169.99 -5.08 19.36 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.12 2.62 6.45 -3.06 -0.02 2.60 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 24 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 27 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.55 6.78 -51.93 -0.35 1.20 16 30 H 0.07 1.50 8.04 -51.93 -0.42 1.09 16 31 H 0.27 7.54 5.60 -40.82 -0.23 7.31 16 32 H 0.06 1.48 7.63 -51.92 -0.40 1.08 16 33 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 271.18 15.07 4.09 4.09 Total: -1.00 -30.43 271.18 -6.67 -37.10 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.17 Total: -1.80 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.78 Total: -8.95 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.18 Total: -37.71 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.43 -6.67 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397775692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.333 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds