Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00200 * 2 1 4 4 H 1.08995 * 109.89207 * 359.06764 * 3 2 1 5 5 O 1.43580 * 110.04465 * 238.04258 * 3 2 1 6 6 C 1.43647 * 110.01197 * 242.47017 * 5 3 2 7 7 C 1.54947 * 105.13363 * 335.38969 * 6 5 3 8 8 C 1.54377 * 109.82807 * 119.99929 * 3 2 1 9 9 H 1.09000 * 110.84985 * 22.47838 * 8 3 2 10 10 C 1.53001 * 110.84956 * 259.06070 * 8 3 2 11 11 N 1.46899 * 109.47375 * 177.77125 * 10 8 3 12 12 C 1.46892 * 111.00348 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47376 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99983 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.07996 * 120.00327 * 179.97438 * 1 2 3 22 22 H 1.08006 * 119.99967 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.99700 * 180.02562 * 2 1 3 24 24 H 1.08999 * 110.30879 * 216.47512 * 6 5 3 25 25 H 1.09003 * 110.31019 * 94.29949 * 6 5 3 26 26 H 1.09004 * 111.12321 * 278.52900 * 7 6 5 27 27 H 1.08994 * 111.12582 * 154.36603 * 7 6 5 28 28 H 1.09002 * 109.46846 * 57.77173 * 10 8 3 29 29 H 1.08998 * 109.47197 * 297.77490 * 10 8 3 30 30 H 1.00903 * 110.99759 * 56.04695 * 11 10 8 31 31 H 1.09004 * 109.47048 * 59.99753 * 12 11 10 32 32 H 1.09010 * 109.47057 * 300.00220 * 12 11 10 33 33 H 0.97000 * 119.99462 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3615 2.1387 -0.0167 5 8 2.9279 1.3743 -1.1444 6 6 4.2983 1.4544 -0.7213 7 6 4.2466 2.0564 0.7055 8 6 2.9542 1.3955 1.2577 9 1 3.1656 0.4030 1.6555 10 6 2.3033 2.2794 2.3235 11 7 3.1488 2.3014 3.5246 12 6 2.5536 3.1418 4.5721 13 6 3.4473 3.1405 5.7855 14 1 4.3654 2.5718 5.7793 15 6 3.0923 3.8644 6.9039 16 7 1.9740 4.5565 6.9117 17 14 4.1998 3.8622 8.4083 18 1 3.8080 2.7489 9.3096 19 1 5.6113 3.6818 7.9836 20 1 4.0604 5.1538 9.1275 21 1 -0.5400 -0.9352 -0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 4.8623 2.1074 -1.3873 25 1 4.7453 0.4605 -0.6966 26 1 4.1489 3.1415 0.6707 27 1 5.1189 1.7608 1.2884 28 1 1.3217 1.8792 2.5775 29 1 2.1937 3.2929 1.9377 30 1 4.0842 2.6078 3.3027 31 1 1.5739 2.7472 4.8415 32 1 2.4454 4.1615 4.2021 33 1 1.3992 4.5580 6.1304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591771552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -40.366424 kcal Electronic energy + Delta-G solvation = -13842.346286 eV Core-core repulsion = 11481.875757 eV Total energy + Delta-G solvation = -2360.470529 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.71474 -35.73717 -33.92134 -33.09710 -31.34945 -28.84629 -26.36735 -23.83015 -22.63848 -21.79995 -20.40322 -19.86466 -17.04812 -16.48133 -16.16186 -14.96600 -14.86946 -14.15608 -13.82816 -13.65738 -13.23203 -12.91678 -12.80240 -12.10970 -11.74158 -11.45820 -11.38780 -10.98972 -10.85040 -10.75485 -10.57937 -10.43211 -10.10392 -9.66218 -9.38138 -8.66658 -8.43322 -7.47955 -6.40571 -4.09740 2.15041 3.43169 3.46592 3.62563 3.98490 4.43593 4.53666 4.60382 4.87462 5.01189 5.16653 5.24245 5.35138 5.36714 5.52909 5.56733 5.68825 5.76170 5.91816 5.92761 6.00649 6.19185 6.38056 6.52250 6.68346 6.89955 6.97271 7.10833 7.72591 8.10780 8.40868 8.54315 8.83966 9.62319 10.99362 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.047782 B = 0.005909 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.859815 B = 4737.673432 C = 5097.408971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.110 3.890 4 H 0.083 0.917 5 O -0.378 6.378 6 C 0.051 3.949 7 C -0.154 4.154 8 C -0.108 4.108 9 H 0.094 0.906 10 C 0.069 3.931 11 N -0.682 5.682 12 C 0.183 3.817 13 C -0.596 4.596 14 H 0.056 0.944 15 C 0.014 3.986 16 N -0.914 5.914 17 Si 1.077 2.923 18 H -0.287 1.287 19 H -0.288 1.288 20 H -0.285 1.285 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.331 0.669 31 H 0.018 0.982 32 H -0.024 1.024 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -6.437 -13.684 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.177 4.177 3 C 0.052 3.948 4 H 0.101 0.899 5 O -0.298 6.298 6 C -0.026 4.026 7 C -0.191 4.191 8 C -0.127 4.127 9 H 0.112 0.888 10 C -0.061 4.061 11 N -0.312 5.312 12 C 0.056 3.944 13 C -0.635 4.635 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.550 5.550 17 Si 0.905 3.095 18 H -0.214 1.214 19 H -0.214 1.214 20 H -0.210 1.210 21 H 0.118 0.882 22 H 0.116 0.884 23 H 0.128 0.872 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.147 0.853 31 H 0.036 0.964 32 H -0.006 1.006 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.626 -6.414 -12.093 13.785 hybrid contribution -0.011 0.199 -1.686 1.698 sum 1.615 -6.215 -13.779 15.202 Atomic orbital electron populations 1.23840 0.95776 1.02039 0.99951 1.23156 0.96111 0.98285 1.00104 1.21933 0.92217 0.95270 0.85347 0.89884 1.88492 1.16070 1.95041 1.30179 1.23367 0.83840 1.00049 0.95322 1.23354 0.98839 1.01100 0.95852 1.22757 0.94154 1.01315 0.94501 0.88797 1.21831 0.97533 0.96186 0.90567 1.60555 1.04816 1.58323 1.07518 1.19669 0.95925 0.88983 0.89833 1.22022 1.08799 1.32806 0.99863 0.92535 1.25894 0.98419 0.93087 1.01568 1.70767 1.11783 1.39709 1.32737 0.83428 0.74632 0.76547 0.74875 1.21372 1.21446 1.21043 0.88159 0.88419 0.87160 0.89886 0.92317 0.90486 0.89410 0.91489 0.96137 0.85254 0.96351 1.00650 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 14.32 29.01 0.42 -1.60 16 2 C -0.16 -1.98 9.03 -36.02 -0.33 -2.31 16 3 C 0.11 1.50 3.52 -27.16 -0.10 1.40 16 4 H 0.08 1.14 7.48 -51.93 -0.39 0.75 16 5 O -0.38 -5.34 11.02 -35.23 -0.39 -5.73 16 6 C 0.05 0.59 7.78 38.18 0.30 0.89 16 7 C -0.15 -1.96 5.93 -24.48 -0.15 -2.10 16 8 C -0.11 -1.56 2.74 -88.67 -0.24 -1.80 16 9 H 0.09 1.40 7.84 -51.93 -0.41 0.99 16 10 C 0.07 1.22 5.04 -3.82 -0.02 1.20 16 11 N -0.68 -14.70 6.49 -115.06 -0.75 -15.44 16 12 C 0.18 4.82 4.75 -4.98 -0.02 4.80 16 13 C -0.60 -17.23 9.32 -34.44 -0.32 -17.55 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 16 N -0.91 -28.17 13.65 55.43 0.76 -27.42 16 17 Si 1.08 25.47 29.90 -169.99 -5.08 20.38 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 22 H 0.10 1.05 7.85 -52.48 -0.41 0.64 16 23 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.01 7.98 -51.93 -0.41 0.59 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 30 H 0.33 6.79 8.06 -39.29 -0.32 6.47 16 31 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 32 H -0.02 -0.66 8.01 -51.92 -0.42 -1.08 16 33 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -31.22 277.26 -7.07 -38.29 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.23 Total: 2.50 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.56 Total: -16.76 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.01 Total: -42.86 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.39 Total: -5.73 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.22 -7.07 -38.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.079 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds