Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00200 * 2 1 4 4 H 1.08995 * 109.89207 * 359.06764 * 3 2 1 5 5 O 1.43580 * 110.04465 * 238.04258 * 3 2 1 6 6 C 1.43647 * 110.01197 * 242.47017 * 5 3 2 7 7 C 1.54947 * 105.13363 * 335.38969 * 6 5 3 8 8 C 1.54377 * 109.82807 * 119.99929 * 3 2 1 9 9 H 1.09000 * 110.84985 * 22.47838 * 8 3 2 10 10 C 1.53001 * 110.84956 * 259.06070 * 8 3 2 11 11 N 1.46899 * 109.47375 * 177.77125 * 10 8 3 12 12 C 1.46892 * 111.00348 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47376 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99983 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.07996 * 120.00327 * 179.97438 * 1 2 3 22 22 H 1.08006 * 119.99967 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.99700 * 180.02562 * 2 1 3 24 24 H 1.08999 * 110.30879 * 216.47512 * 6 5 3 25 25 H 1.09003 * 110.31019 * 94.29949 * 6 5 3 26 26 H 1.09004 * 111.12321 * 278.52900 * 7 6 5 27 27 H 1.08994 * 111.12582 * 154.36603 * 7 6 5 28 28 H 1.09002 * 109.46846 * 57.77173 * 10 8 3 29 29 H 1.08998 * 109.47197 * 297.77490 * 10 8 3 30 30 H 1.00903 * 110.99759 * 56.04695 * 11 10 8 31 31 H 1.09004 * 109.47048 * 59.99753 * 12 11 10 32 32 H 1.09010 * 109.47057 * 300.00220 * 12 11 10 33 33 H 0.97000 * 119.99462 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3615 2.1387 -0.0167 5 8 2.9279 1.3743 -1.1444 6 6 4.2983 1.4544 -0.7213 7 6 4.2466 2.0564 0.7055 8 6 2.9542 1.3955 1.2577 9 1 3.1656 0.4030 1.6555 10 6 2.3033 2.2794 2.3235 11 7 3.1488 2.3014 3.5246 12 6 2.5536 3.1418 4.5721 13 6 3.4473 3.1405 5.7855 14 1 4.3654 2.5718 5.7793 15 6 3.0923 3.8644 6.9039 16 7 1.9740 4.5565 6.9117 17 14 4.1998 3.8622 8.4083 18 1 3.8080 2.7489 9.3096 19 1 5.6113 3.6818 7.9836 20 1 4.0604 5.1538 9.1275 21 1 -0.5400 -0.9352 -0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 4.8623 2.1074 -1.3873 25 1 4.7453 0.4605 -0.6966 26 1 4.1489 3.1415 0.6707 27 1 5.1189 1.7608 1.2884 28 1 1.3217 1.8792 2.5775 29 1 2.1937 3.2929 1.9377 30 1 4.0842 2.6078 3.3027 31 1 1.5739 2.7472 4.8415 32 1 2.4454 4.1615 4.2021 33 1 1.3992 4.5580 6.1304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591771552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -61.957042 kcal Electronic energy + Delta-G solvation = -13843.282526 eV Core-core repulsion = 11481.875757 eV Total energy + Delta-G solvation = -2361.406768 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80041 -37.45695 -35.20309 -34.72244 -32.84672 -30.01876 -28.16729 -25.53409 -23.89971 -23.51884 -21.62880 -20.86246 -19.10546 -17.67419 -17.25458 -16.46544 -15.99215 -15.92723 -15.59935 -14.87231 -14.53169 -14.42807 -14.19640 -13.65308 -13.36668 -13.00580 -12.72357 -12.49354 -12.42027 -12.06337 -11.91849 -11.85583 -11.76519 -10.83091 -10.64742 -10.63230 -10.33740 -9.32556 -8.73927 -6.45227 1.22042 1.53833 1.63065 1.81360 2.54772 2.98381 3.11100 3.19214 3.49568 3.75485 3.86895 4.10075 4.19625 4.21999 4.31774 4.40227 4.58145 4.66404 4.76466 4.82247 4.84631 4.94208 4.96588 5.00716 5.21964 5.60359 5.67091 5.75160 5.95489 5.98312 6.33471 6.50435 6.62164 7.37432 8.66047 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.047782 B = 0.005909 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.859815 B = 4737.673432 C = 5097.408971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.077 0.923 5 O -0.393 6.393 6 C 0.051 3.949 7 C -0.152 4.152 8 C -0.101 4.101 9 H 0.092 0.908 10 C 0.072 3.928 11 N -0.680 5.680 12 C 0.193 3.807 13 C -0.612 4.612 14 H 0.058 0.942 15 C -0.038 4.038 16 N -0.937 5.937 17 Si 1.128 2.872 18 H -0.273 1.273 19 H -0.267 1.267 20 H -0.282 1.282 21 H 0.119 0.881 22 H 0.099 0.901 23 H 0.118 0.882 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.338 0.662 31 H -0.004 1.004 32 H -0.043 1.043 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -7.308 -13.998 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C 0.056 3.944 4 H 0.095 0.905 5 O -0.313 6.313 6 C -0.025 4.025 7 C -0.190 4.190 8 C -0.120 4.120 9 H 0.111 0.889 10 C -0.057 4.057 11 N -0.311 5.311 12 C 0.065 3.935 13 C -0.650 4.650 14 H 0.076 0.924 15 C -0.235 4.235 16 N -0.574 5.574 17 Si 0.948 3.052 18 H -0.198 1.198 19 H -0.191 1.191 20 H -0.208 1.208 21 H 0.137 0.863 22 H 0.117 0.883 23 H 0.136 0.864 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.156 0.844 31 H 0.014 0.986 32 H -0.026 1.026 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.771 -7.302 -12.449 14.697 hybrid contribution -0.414 0.459 -1.667 1.778 sum 2.357 -6.843 -14.116 15.863 Atomic orbital electron populations 1.24075 0.95565 1.03091 0.98135 1.23208 0.96617 0.98022 1.01765 1.21854 0.92007 0.95876 0.84680 0.90469 1.88474 1.17191 1.95199 1.30457 1.23515 0.83001 1.01231 0.94711 1.23357 0.98128 1.00719 0.96800 1.22622 0.95135 1.00424 0.93824 0.88942 1.21844 0.96961 0.96930 0.89983 1.60431 1.05516 1.56771 1.08340 1.19382 0.94800 0.88479 0.90865 1.22392 1.09107 1.32660 1.00874 0.92373 1.27535 0.98862 0.92115 1.04988 1.70905 1.12852 1.41300 1.32331 0.82806 0.73835 0.77042 0.71528 1.19843 1.19128 1.20773 0.86255 0.88282 0.86379 0.88011 0.90895 0.91019 0.88559 0.92287 0.96277 0.84409 0.98643 1.02591 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 14.32 67.78 0.97 -2.64 16 2 C -0.18 -4.21 9.03 25.65 0.23 -3.98 16 3 C 0.11 2.97 3.52 30.32 0.11 3.08 16 4 H 0.08 2.08 7.48 -2.39 -0.02 2.06 16 5 O -0.39 -10.46 11.02 -148.98 -1.64 -12.10 16 6 C 0.05 1.08 7.78 72.65 0.56 1.64 16 7 C -0.15 -3.64 5.93 32.05 0.19 -3.45 16 8 C -0.10 -2.81 2.74 -9.53 -0.03 -2.84 16 9 H 0.09 2.63 7.84 -2.39 -0.02 2.61 16 10 C 0.07 2.56 5.04 86.30 0.43 2.99 16 11 N -0.68 -29.30 6.49 -517.94 -3.36 -32.66 16 12 C 0.19 10.38 4.75 85.56 0.41 10.79 16 13 C -0.61 -35.44 9.32 25.60 0.24 -35.20 16 14 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 15 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 16 N -0.94 -58.47 13.65 21.45 0.29 -58.17 16 17 Si 1.13 50.23 29.90 68.60 2.05 52.28 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 22 H 0.10 2.03 7.85 -2.91 -0.02 2.00 16 23 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.79 7.98 -2.38 -0.02 1.77 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.02 0.68 8.05 -2.39 -0.02 0.66 16 30 H 0.34 13.70 8.06 -89.69 -0.72 12.97 16 31 H 0.00 -0.26 8.01 -2.38 -0.02 -0.28 16 32 H -0.04 -2.47 8.01 -2.38 -0.02 -2.49 16 33 H 0.25 16.07 7.22 -92.71 -0.67 15.40 16 Total: -1.00 -66.13 277.26 1.37 -64.76 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.44 Total: 17.22 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.58 Total: -31.33 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.07 Total: -90.84 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.64 Total: -12.10 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.05 Total: 52.28 kcal Total: -66.13 1.37 -64.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.804 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds