Wall clock time and date at job start Mon Mar 30 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47234 * 2 1 4 4 H 1.08994 * 110.20950 * 52.82882 * 3 2 1 5 5 C 1.54474 * 110.24352 * 290.81058 * 3 2 1 6 6 C 1.54625 * 101.76209 * 215.58204 * 5 3 2 7 7 H 1.09003 * 110.48918 * 265.98522 * 6 5 3 8 8 C 1.53003 * 110.48739 * 143.47681 * 6 5 3 9 9 C 1.51282 * 104.25911 * 24.58008 * 6 5 3 10 10 O 1.21284 * 124.94771 * 164.00589 * 9 6 5 11 11 N 1.34417 * 110.11070 * 344.14581 * 9 6 5 12 12 C 1.46502 * 124.34579 * 179.43506 * 11 9 6 13 13 C 1.50701 * 109.47106 * 274.99004 * 12 11 9 14 14 H 1.07995 * 120.00020 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99606 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99554 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47303 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46807 * 119.99598 * 17 15 13 20 20 H 1.48502 * 109.46647 * 239.99530 * 17 15 13 21 21 H 1.08999 * 109.47264 * 305.27701 * 1 2 3 22 22 H 1.08998 * 109.47186 * 65.28538 * 1 2 3 23 23 H 1.09008 * 109.47035 * 185.28319 * 1 2 3 24 24 H 1.09005 * 109.47380 * 239.99843 * 2 1 3 25 25 H 1.09007 * 109.47735 * 120.00104 * 2 1 3 26 26 H 1.09001 * 110.97320 * 333.70103 * 5 3 2 27 27 H 1.09000 * 110.97056 * 97.46530 * 5 3 2 28 28 H 1.09005 * 109.46823 * 59.99887 * 8 6 5 29 29 H 1.09003 * 109.47351 * 179.97438 * 8 6 5 30 30 H 1.09001 * 109.47208 * 299.99814 * 8 6 5 31 31 H 1.09004 * 109.47096 * 154.98778 * 12 11 9 32 32 H 1.09001 * 109.47466 * 34.99085 * 12 11 9 33 33 H 0.97001 * 119.99831 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5828 2.0035 0.8150 5 6 1.7327 2.1181 -1.3548 6 6 2.9740 3.0201 -1.5460 7 1 2.7778 4.0240 -1.1693 8 6 3.3760 3.0722 -3.0213 9 6 4.0519 2.3498 -0.7229 10 8 5.2397 2.5764 -0.8170 11 7 3.5020 1.4643 0.1257 12 6 4.2638 0.6323 1.0605 13 6 4.7361 -0.6127 0.3547 14 1 4.4928 -0.7688 -0.6858 15 6 5.4780 -1.5529 1.0379 16 7 5.7739 -1.3630 2.3051 17 14 6.0641 -3.0958 0.1629 18 1 5.6026 -3.0701 -1.2483 19 1 7.5476 -3.1515 0.1981 20 1 5.5075 -4.2925 0.8436 21 1 -0.3634 0.5935 0.8389 22 1 -0.3633 0.4297 -0.9335 23 1 -0.3633 -1.0234 0.0946 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6614 1.3785 -2.1523 27 1 0.8224 2.7147 -1.2956 28 1 2.5510 3.4757 -3.6086 29 1 4.2510 3.7118 -3.1372 30 1 3.6119 2.0666 -3.3694 31 1 3.6278 0.3544 1.9010 32 1 5.1250 1.1916 1.4260 33 1 6.2961 -2.0243 2.7856 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687713508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:55 Heat of formation + Delta-G solvation = -54.673951 kcal Electronic energy + Delta-G solvation = -14614.117986 eV Core-core repulsion = 12253.027036 eV Total energy + Delta-G solvation = -2361.090950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86588 -36.11842 -33.80841 -32.71896 -31.95599 -28.38927 -26.55967 -24.87346 -23.11619 -21.68919 -20.18196 -18.28404 -16.71447 -15.98716 -15.38382 -14.39787 -14.31231 -14.30089 -13.32995 -13.14730 -12.92346 -12.32956 -12.25644 -12.09843 -11.75815 -11.43090 -11.26833 -11.02231 -10.89283 -10.81592 -10.62025 -10.53842 -10.10055 -10.00314 -9.56432 -8.76646 -8.43642 -7.62501 -6.05101 -4.09400 3.29393 3.36871 3.40318 3.49533 4.09367 4.45258 4.79682 4.86957 5.01892 5.28972 5.42565 5.51634 5.52527 5.65278 5.73236 5.79367 5.89977 6.02305 6.12741 6.17260 6.29278 6.33960 6.45868 6.62212 6.87466 7.02100 7.38731 7.63728 7.93061 8.21413 8.32560 8.90562 9.18588 9.56517 11.02834 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.011066 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.839680 B = 2529.742848 C = 2991.752587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.133 3.867 4 H 0.068 0.932 5 C -0.123 4.123 6 C -0.131 4.131 7 H 0.097 0.903 8 C -0.129 4.129 9 C 0.511 3.489 10 O -0.540 6.540 11 N -0.597 5.597 12 C 0.256 3.744 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 5.104 -5.885 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.029 3.971 4 H 0.085 0.915 5 C -0.161 4.161 6 C -0.153 4.153 7 H 0.115 0.885 8 C -0.187 4.187 9 C 0.296 3.704 10 O -0.418 6.418 11 N -0.328 5.328 12 C 0.137 3.863 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.593 5.072 -5.697 13.054 hybrid contribution 0.342 -0.963 -0.290 1.062 sum -10.251 4.109 -5.987 12.563 Atomic orbital electron populations 1.21747 0.96179 1.01417 1.01147 1.21782 0.94439 0.95775 1.04409 1.21592 0.82187 0.96849 0.96518 0.91452 1.22781 0.97118 0.98620 0.97564 1.21974 0.95693 1.00176 0.97442 0.88541 1.21562 1.01242 1.02547 0.93351 1.20546 0.88695 0.80234 0.80883 1.90646 1.16216 1.66155 1.68788 1.48721 1.06090 1.39277 1.38747 1.19173 0.90870 0.88967 0.87251 1.21465 1.33481 1.03552 0.97454 0.92326 1.24938 0.95813 0.98531 0.94888 1.69938 1.39105 1.35718 1.08722 0.86453 0.78646 0.82662 0.79759 1.19777 1.20889 1.20976 0.93018 0.93109 0.92832 0.91322 0.90087 0.90180 0.90229 0.92394 0.91952 0.92397 0.94731 0.94516 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.71 37.15 0.36 -1.42 16 2 C -0.13 -2.05 4.96 -26.73 -0.13 -2.18 16 3 C 0.13 2.21 3.32 -67.01 -0.22 1.98 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.12 -1.65 5.56 -25.10 -0.14 -1.79 16 6 C -0.13 -2.05 3.52 -90.63 -0.32 -2.37 16 7 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 8 C -0.13 -1.82 9.09 37.16 0.34 -1.48 16 9 C 0.51 11.24 7.46 -10.86 -0.08 11.16 16 10 O -0.54 -14.28 17.51 5.55 0.10 -14.18 16 11 N -0.60 -13.11 2.77 -166.25 -0.46 -13.57 16 12 C 0.26 6.75 4.84 -5.19 -0.03 6.72 16 13 C -0.52 -14.75 8.99 -34.44 -0.31 -15.06 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.53 7.73 -51.93 -0.40 0.13 16 23 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.07 1.20 7.99 -51.93 -0.42 0.79 16 25 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 26 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.91 7.61 -51.93 -0.39 0.52 16 32 H 0.04 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -32.35 274.63 -6.46 -38.81 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -5.32 Total: -3.50 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.63 Total: -2.82 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.28 Total: -39.40 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.10 Total: -14.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.35 -6.46 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.867 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds