Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.52998 * 109.46964 * 119.99352 * 2 1 3 5 5 C 1.52998 * 109.47766 * 239.99506 * 2 1 3 6 6 H 1.08995 * 115.55374 * 260.91731 * 5 2 1 7 7 C 1.53002 * 117.49718 * 115.24038 * 5 2 1 8 8 C 1.52996 * 60.00046 * 252.51402 * 7 5 2 9 9 H 1.09001 * 117.49989 * 252.50964 * 8 7 5 10 10 C 1.50700 * 117.49542 * 107.49337 * 8 7 5 11 11 O 1.21297 * 120.00035 * 193.78349 * 10 8 7 12 12 N 1.34780 * 120.00274 * 13.78005 * 10 8 7 13 13 C 1.37098 * 120.00085 * 179.97438 * 12 10 8 14 14 H 1.08001 * 119.99989 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99931 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99804 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47036 * 90.00300 * 17 15 13 19 19 H 1.48498 * 109.47374 * 209.99922 * 17 15 13 20 20 H 1.48493 * 109.47259 * 330.00673 * 17 15 13 21 21 H 1.09002 * 109.47013 * 38.64452 * 1 2 3 22 22 H 1.09011 * 109.46837 * 158.63846 * 1 2 3 23 23 H 1.08993 * 109.47468 * 278.63714 * 1 2 3 24 24 H 1.08997 * 109.47138 * 59.99694 * 3 2 1 25 25 H 1.09002 * 109.46735 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47293 * 299.99258 * 3 2 1 27 27 H 1.08998 * 109.47047 * 64.90666 * 4 2 1 28 28 H 1.09000 * 109.47574 * 184.90247 * 4 2 1 29 29 H 1.09000 * 109.47427 * 304.90813 * 4 2 1 30 30 H 1.09000 * 117.50140 * 0.02562 * 7 5 2 31 31 H 1.08998 * 117.49353 * 144.99845 * 7 5 2 32 32 H 0.96994 * 119.99868 * 0.02562 * 12 10 8 33 33 H 0.97000 * 119.99602 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.0401 -0.7213 -1.2491 6 1 2.3432 -1.7580 -1.1026 7 6 2.8213 0.1052 -2.2726 8 6 1.3969 -0.3555 -2.5883 9 1 1.2766 -1.1517 -3.3230 10 6 0.3094 0.6877 -2.5760 11 8 -0.8554 0.3495 -2.5695 12 7 0.6311 1.9965 -2.5721 13 6 -0.3583 2.9456 -2.5615 14 1 -1.3954 2.6444 -2.5558 15 6 -0.0266 4.2949 -2.5581 16 7 1.2353 4.6613 -2.5655 17 14 -1.3746 5.5880 -2.5443 18 1 -1.7230 5.9250 -1.1405 19 1 -0.8969 6.8085 -3.2423 20 1 -2.5756 5.0585 -3.2388 21 1 -0.3633 0.8027 -0.6418 22 1 -0.3633 -0.9572 -0.3744 23 1 -0.3634 0.1543 1.0159 24 1 1.6765 1.9564 0.8899 25 1 3.1299 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.7501 -1.7710 1.2066 28 1 3.1264 -0.6457 1.2944 29 1 1.6066 -0.2605 2.1371 30 1 2.9721 1.1628 -2.0559 31 1 3.6384 -0.3878 -2.7993 32 1 1.5625 2.2670 -2.5777 33 1 1.4668 5.6033 -2.5635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699765756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -15.432694 kcal Electronic energy + Delta-G solvation = -14981.434914 eV Core-core repulsion = 12622.045593 eV Total energy + Delta-G solvation = -2359.389321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84508 -36.69309 -33.99113 -33.49209 -31.09858 -26.83365 -26.70252 -25.37016 -22.89037 -22.39815 -19.09491 -18.22152 -17.53098 -15.93018 -15.42761 -14.68599 -13.97080 -13.63804 -13.55990 -13.36496 -12.53709 -12.22402 -11.98665 -11.86553 -11.53893 -11.34040 -11.15440 -10.83718 -10.51017 -10.41670 -10.22195 -10.21246 -10.03934 -9.66432 -9.46255 -9.21599 -8.31361 -7.91641 -6.42117 -3.82538 3.16998 3.26821 3.32566 3.71359 4.17538 4.39019 4.88335 5.10727 5.24898 5.27327 5.29442 5.57054 5.72699 5.74893 5.98475 6.04045 6.09823 6.23813 6.30806 6.36876 6.37383 6.45908 6.56957 6.67363 6.79101 6.82211 7.10154 7.28148 7.55532 8.06319 8.60740 9.17422 9.54119 10.05989 10.75440 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037392 B = 0.010481 C = 0.010144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.635471 B = 2670.861801 C = 2759.593399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.165 4.165 4 C -0.134 4.134 5 C -0.119 4.119 6 H 0.102 0.898 7 C -0.184 4.184 8 C -0.162 4.162 9 H 0.116 0.884 10 C 0.481 3.519 11 O -0.592 6.592 12 N -0.558 5.558 13 C -0.302 4.302 14 H 0.103 0.897 15 C 0.025 3.975 16 N -0.899 5.899 17 Si 0.928 3.072 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.394 0.606 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -6.034 3.954 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.039 4.039 3 C -0.222 4.222 4 C -0.192 4.192 5 C -0.138 4.138 6 H 0.121 0.879 7 C -0.221 4.221 8 C -0.184 4.184 9 H 0.134 0.866 10 C 0.268 3.732 11 O -0.478 6.478 12 N -0.197 5.197 13 C -0.431 4.431 14 H 0.121 0.879 15 C -0.177 4.177 16 N -0.540 5.540 17 Si 0.755 3.245 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 H 0.111 0.889 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.231 0.769 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.030 -6.037 3.943 8.261 hybrid contribution 0.044 0.755 -0.013 0.756 sum 4.074 -5.283 3.930 7.743 Atomic orbital electron populations 1.22293 0.93485 1.04080 1.01272 1.20069 0.96243 0.95161 0.92432 1.22433 0.99876 0.95320 1.04588 1.21882 1.00379 0.99723 0.97183 1.22415 1.02579 0.99090 0.89734 0.87949 1.23302 0.94118 1.01621 1.03048 1.22440 0.93597 1.01851 1.00503 0.86592 1.18789 0.88530 0.82954 0.82945 1.90534 1.19787 1.81108 1.56349 1.42161 1.09786 1.04103 1.63650 1.19709 0.90182 0.85472 1.47770 0.87896 1.25230 0.97103 0.98124 0.97254 1.69603 1.16214 1.17860 1.50360 0.85893 0.80596 0.79647 0.78391 1.20408 1.20954 1.19437 0.88875 0.92924 0.94241 0.93360 0.93462 0.88778 0.93165 0.93092 0.92959 0.87450 0.88907 0.76907 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 7.10 37.16 0.26 -2.78 16 2 C -0.04 -0.67 0.77 -154.51 -0.12 -0.79 16 3 C -0.16 -3.04 6.91 37.16 0.26 -2.79 16 4 C -0.13 -1.89 8.33 37.16 0.31 -1.58 16 5 C -0.12 -1.95 5.25 -90.62 -0.48 -2.43 16 6 H 0.10 1.45 8.01 -51.93 -0.42 1.03 16 7 C -0.18 -2.98 8.92 -26.73 -0.24 -3.22 16 8 C -0.16 -3.07 6.15 -91.77 -0.56 -3.64 16 9 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 10 C 0.48 11.46 4.04 -10.98 -0.04 11.41 16 11 O -0.59 -16.11 14.88 5.54 0.08 -16.02 16 12 N -0.56 -13.93 3.31 -10.96 -0.04 -13.97 16 13 C -0.30 -8.25 9.65 -14.93 -0.14 -8.39 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 17 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H 0.09 2.20 4.50 -51.93 -0.23 1.97 16 22 H 0.05 1.04 7.88 -51.92 -0.41 0.63 16 23 H 0.04 0.71 7.88 -51.93 -0.41 0.30 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.78 7.67 -51.93 -0.40 0.38 16 26 H 0.09 2.01 3.28 -51.93 -0.17 1.84 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.71 8.03 -51.93 -0.42 0.29 16 30 H 0.11 1.88 4.61 -51.93 -0.24 1.65 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.39 9.52 4.96 -40.82 -0.20 9.32 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -28.87 257.71 -5.74 -34.61 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -4.52 Total: 12.50 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.85 Total: -13.64 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.69 Total: -37.20 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.87 -5.74 -34.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699765756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.180 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds