Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.52998 * 109.46964 * 119.99352 * 2 1 3 5 5 C 1.52998 * 109.47766 * 239.99506 * 2 1 3 6 6 H 1.08995 * 115.55374 * 260.91731 * 5 2 1 7 7 C 1.53002 * 117.49718 * 115.24038 * 5 2 1 8 8 C 1.52996 * 60.00046 * 252.51402 * 7 5 2 9 9 H 1.09001 * 117.49989 * 252.50964 * 8 7 5 10 10 C 1.50700 * 117.49542 * 107.49337 * 8 7 5 11 11 O 1.21297 * 120.00035 * 193.78349 * 10 8 7 12 12 N 1.34780 * 120.00274 * 13.78005 * 10 8 7 13 13 C 1.37098 * 120.00085 * 179.97438 * 12 10 8 14 14 H 1.08001 * 119.99989 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99931 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99804 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47036 * 90.00300 * 17 15 13 19 19 H 1.48498 * 109.47374 * 209.99922 * 17 15 13 20 20 H 1.48493 * 109.47259 * 330.00673 * 17 15 13 21 21 H 1.09002 * 109.47013 * 38.64452 * 1 2 3 22 22 H 1.09011 * 109.46837 * 158.63846 * 1 2 3 23 23 H 1.08993 * 109.47468 * 278.63714 * 1 2 3 24 24 H 1.08997 * 109.47138 * 59.99694 * 3 2 1 25 25 H 1.09002 * 109.46735 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47293 * 299.99258 * 3 2 1 27 27 H 1.08998 * 109.47047 * 64.90666 * 4 2 1 28 28 H 1.09000 * 109.47574 * 184.90247 * 4 2 1 29 29 H 1.09000 * 109.47427 * 304.90813 * 4 2 1 30 30 H 1.09000 * 117.50140 * 0.02562 * 7 5 2 31 31 H 1.08998 * 117.49353 * 144.99845 * 7 5 2 32 32 H 0.96994 * 119.99868 * 0.02562 * 12 10 8 33 33 H 0.97000 * 119.99602 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 2.0401 -0.7213 -1.2491 6 1 2.3432 -1.7580 -1.1026 7 6 2.8213 0.1052 -2.2726 8 6 1.3969 -0.3555 -2.5883 9 1 1.2766 -1.1517 -3.3230 10 6 0.3094 0.6877 -2.5760 11 8 -0.8554 0.3495 -2.5695 12 7 0.6311 1.9965 -2.5721 13 6 -0.3583 2.9456 -2.5615 14 1 -1.3954 2.6444 -2.5558 15 6 -0.0266 4.2949 -2.5581 16 7 1.2353 4.6613 -2.5655 17 14 -1.3746 5.5880 -2.5443 18 1 -1.7230 5.9250 -1.1405 19 1 -0.8969 6.8085 -3.2423 20 1 -2.5756 5.0585 -3.2388 21 1 -0.3633 0.8027 -0.6418 22 1 -0.3633 -0.9572 -0.3744 23 1 -0.3634 0.1543 1.0159 24 1 1.6765 1.9564 0.8899 25 1 3.1299 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.7501 -1.7710 1.2066 28 1 3.1264 -0.6457 1.2944 29 1 1.6066 -0.2605 2.1371 30 1 2.9721 1.1628 -2.0559 31 1 3.6384 -0.3878 -2.7993 32 1 1.5625 2.2670 -2.5777 33 1 1.4668 5.6033 -2.5635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699765756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = -32.822755 kcal Electronic energy + Delta-G solvation = -14982.189004 eV Core-core repulsion = 12622.045593 eV Total energy + Delta-G solvation = -2360.143411 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.45092 -38.39960 -36.00230 -34.89121 -33.09943 -28.26443 -28.11531 -27.28281 -24.55302 -23.72405 -20.80387 -20.13207 -19.06715 -17.60622 -17.08240 -16.49973 -15.81220 -15.22938 -15.11616 -14.78264 -14.16851 -13.91802 -13.53740 -13.41891 -13.08479 -12.94261 -12.66959 -12.41635 -12.29947 -12.15787 -11.88630 -11.65366 -11.46818 -11.35159 -11.04796 -10.71542 -10.20355 -9.91612 -8.45088 -5.92182 1.36166 1.40734 1.52721 1.98194 2.29869 2.87581 3.24206 3.27366 3.72539 3.84854 3.95816 4.27505 4.32664 4.36475 4.60162 4.68780 4.79977 4.83262 4.94828 4.98686 5.02385 5.13124 5.24302 5.25345 5.33106 5.42920 5.46711 5.57569 5.72555 6.02783 6.61488 7.14350 7.58541 8.14216 8.72168 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037392 B = 0.010481 C = 0.010144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.635471 B = 2670.861801 C = 2759.593399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C -0.164 4.164 4 C -0.128 4.128 5 C -0.104 4.104 6 H 0.139 0.861 7 C -0.164 4.164 8 C -0.189 4.189 9 H 0.132 0.868 10 C 0.481 3.519 11 O -0.635 6.635 12 N -0.561 5.561 13 C -0.331 4.331 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.916 5.916 17 Si 0.986 3.014 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.275 1.275 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.397 0.603 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -6.824 4.619 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.041 4.041 3 C -0.221 4.221 4 C -0.185 4.185 5 C -0.123 4.123 6 H 0.156 0.844 7 C -0.201 4.201 8 C -0.210 4.210 9 H 0.150 0.850 10 C 0.270 3.730 11 O -0.524 6.524 12 N -0.200 5.200 13 C -0.461 4.461 14 H 0.094 0.906 15 C -0.208 4.208 16 N -0.556 5.556 17 Si 0.811 3.189 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.200 1.200 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.234 0.766 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.748 -6.825 4.608 10.042 hybrid contribution -0.501 0.985 -0.205 1.124 sum 5.247 -5.840 4.403 9.001 Atomic orbital electron populations 1.22188 0.95953 1.01902 1.00663 1.20101 0.94115 0.94987 0.94862 1.22384 1.01094 0.95995 1.02640 1.21816 1.01503 1.00070 0.95095 1.22620 1.00866 1.00843 0.87959 0.84366 1.23379 0.93219 1.01152 1.02341 1.22334 0.93772 1.01373 1.03538 0.84997 1.19625 0.89251 0.83347 0.80790 1.90491 1.22213 1.81809 1.57893 1.42144 1.09354 1.04388 1.64099 1.19609 0.89757 0.86850 1.49836 0.90585 1.25928 0.99270 0.99260 0.96390 1.69660 1.17282 1.18523 1.50171 0.85024 0.77909 0.77451 0.78564 1.19782 1.19534 1.19958 0.93212 0.93542 0.93330 0.94177 0.91362 0.91848 0.91583 0.91128 0.92863 0.89083 0.85116 0.76559 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 7.10 71.98 0.51 -5.43 16 2 C -0.04 -1.31 0.77 -52.18 -0.04 -1.35 16 3 C -0.16 -5.89 6.91 71.98 0.50 -5.39 16 4 C -0.13 -3.12 8.33 71.98 0.60 -2.52 16 5 C -0.10 -3.09 5.25 -10.79 -0.06 -3.14 16 6 H 0.14 3.18 8.01 -2.39 -0.02 3.16 16 7 C -0.16 -4.83 8.92 30.59 0.27 -4.56 16 8 C -0.19 -6.90 6.15 -11.54 -0.07 -6.97 16 9 H 0.13 4.36 8.14 -2.39 -0.02 4.34 16 10 C 0.48 23.49 4.04 87.66 0.35 23.85 16 11 O -0.64 -36.10 14.88 -3.08 -0.05 -36.14 16 12 N -0.56 -28.91 3.31 -306.97 -1.02 -29.93 16 13 C -0.33 -18.82 9.65 84.04 0.81 -18.01 16 14 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 15 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 16 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 17 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H 0.05 2.43 4.50 -2.39 -0.01 2.42 16 22 H 0.05 1.84 7.88 -2.38 -0.02 1.82 16 23 H 0.05 1.75 7.88 -2.39 -0.02 1.73 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 2.11 7.67 -2.39 -0.02 2.09 16 26 H 0.06 2.73 3.28 -2.39 -0.01 2.72 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.29 8.03 -2.39 -0.02 1.27 16 30 H 0.09 3.04 4.61 -2.39 -0.01 3.03 16 31 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.40 19.63 4.96 -92.71 -0.46 19.17 16 33 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -64.48 257.71 5.24 -59.24 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.65 Total: 33.79 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.35 Total: -23.51 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -0.73 Total: -78.69 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.05 Total: -36.14 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.48 5.24 -59.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699765756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.417 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds