Wall clock time and date at job start Mon Mar 30 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47080 * 239.99963 * 2 1 3 5 5 C 1.53004 * 109.47114 * 120.00220 * 2 1 3 6 6 H 1.08999 * 115.56298 * 213.08288 * 5 2 1 7 7 C 1.53075 * 117.51235 * 358.78066 * 5 2 1 8 8 C 1.52998 * 117.49889 * 67.38802 * 5 2 1 9 9 H 1.08996 * 117.50038 * 144.99758 * 8 5 2 10 10 C 1.50703 * 117.49956 * 0.02562 * 8 5 2 11 11 O 1.21292 * 119.99957 * 348.73793 * 10 8 5 12 12 N 1.34775 * 120.00047 * 168.74329 * 10 8 5 13 13 C 1.37100 * 120.00078 * 180.02562 * 12 10 8 14 14 H 1.08001 * 119.99665 * 359.97438 * 13 12 10 15 15 C 1.38946 * 119.99992 * 179.72513 * 13 12 10 16 16 N 1.31408 * 120.00257 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46810 * 59.99709 * 17 15 13 19 19 H 1.48499 * 109.46982 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46849 * 299.99727 * 17 15 13 21 21 H 1.08999 * 109.47466 * 322.68540 * 1 2 3 22 22 H 1.09002 * 109.47411 * 82.68634 * 1 2 3 23 23 H 1.09001 * 109.47613 * 202.68384 * 1 2 3 24 24 H 1.08997 * 109.47362 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47290 * 300.00285 * 3 2 1 26 26 H 1.09010 * 109.46947 * 59.99994 * 3 2 1 27 27 H 1.09003 * 109.47294 * 270.89502 * 4 2 1 28 28 H 1.09003 * 109.47542 * 30.89484 * 4 2 1 29 29 H 1.09004 * 109.46908 * 150.89320 * 4 2 1 30 30 H 1.09003 * 117.51450 * 0.02562 * 7 5 2 31 31 H 1.08997 * 117.51609 * 214.95281 * 7 5 2 32 32 H 0.97001 * 119.99912 * 359.97438 * 12 10 8 33 33 H 0.97000 * 120.00279 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 2.9735 -0.3409 1.6638 7 6 0.9960 -1.2559 2.2329 8 6 1.7835 -2.2263 1.3502 9 1 2.5485 -2.8361 1.8308 10 6 1.0484 -2.8848 0.2114 11 8 0.5071 -2.2050 -0.6348 12 7 0.9924 -4.2291 0.1332 13 6 0.3240 -4.8283 -0.9032 14 1 -0.1579 -4.2229 -1.6567 15 6 0.2711 -6.2142 -0.9869 16 7 0.8621 -6.9507 -0.0731 17 14 -0.6401 -7.0305 -2.3986 18 1 -0.0294 -6.6162 -3.6873 19 1 -0.5483 -8.5061 -2.2596 20 1 -2.0664 -6.6181 -2.3714 21 1 -0.3634 0.8173 0.6229 22 1 -0.3634 0.1308 -1.0193 23 1 -0.3634 -0.9481 0.3963 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.1459 -1.7851 -1.0368 28 1 1.3297 -0.5826 -2.0643 29 1 3.0076 -0.3099 -1.5366 30 1 -0.0542 -1.0941 1.9898 31 1 1.2429 -1.2273 3.2941 32 1 1.4255 -4.7728 0.8097 33 1 0.8255 -7.9182 -0.1317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699765757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:01 Heat of formation + Delta-G solvation = 9.389430 kcal Electronic energy + Delta-G solvation = -14711.101780 eV Core-core repulsion = 12352.788827 eV Total energy + Delta-G solvation = -2358.312953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95239 -36.58790 -33.86378 -33.41576 -31.11952 -26.78685 -26.57529 -25.51638 -22.74386 -22.30885 -19.21276 -17.98626 -17.33865 -16.35460 -14.80696 -14.64450 -14.43307 -13.91346 -13.60091 -13.39879 -12.76911 -12.11765 -11.89809 -11.52284 -11.42708 -11.16352 -11.12034 -10.62692 -10.46946 -10.30218 -10.25231 -10.20258 -9.86120 -9.70050 -9.36569 -8.95306 -7.96783 -7.75658 -6.40748 -3.79755 3.18245 3.25933 3.30059 3.64860 4.17274 4.51041 4.89352 5.11771 5.25939 5.42543 5.56490 5.63738 5.73622 5.83251 6.03747 6.05943 6.18726 6.29318 6.31523 6.36751 6.47126 6.55370 6.64100 6.83147 6.89016 7.01597 7.32496 7.44750 7.55797 8.07572 8.64034 9.18703 9.58348 10.09548 10.76919 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.051528 B = 0.008442 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.258996 B = 3316.058620 C = 3585.615300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.022 4.022 3 C -0.137 4.137 4 C -0.124 4.124 5 C -0.114 4.114 6 H 0.098 0.902 7 C -0.166 4.166 8 C -0.171 4.171 9 H 0.105 0.895 10 C 0.457 3.543 11 O -0.564 6.564 12 N -0.557 5.557 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.019 0.981 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.010 0.990 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.392 0.608 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 9.050 3.176 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.022 4.022 3 C -0.194 4.194 4 C -0.181 4.181 5 C -0.133 4.133 6 H 0.116 0.884 7 C -0.204 4.204 8 C -0.192 4.192 9 H 0.123 0.877 10 C 0.244 3.756 11 O -0.451 6.451 12 N -0.192 5.192 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.038 0.962 22 H 0.063 0.937 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.225 0.775 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.821 9.258 2.614 9.791 hybrid contribution -0.045 -0.907 -0.174 0.925 sum 1.776 8.351 2.440 8.879 Atomic orbital electron populations 1.22228 0.94157 1.01301 1.00664 1.19817 0.96119 0.92674 0.93600 1.21939 1.00045 0.96630 1.00786 1.22343 0.96809 1.03059 0.95856 1.22381 0.99135 0.93610 0.98202 0.88396 1.23184 0.98723 1.02909 0.95576 1.22203 1.03230 0.93000 1.00781 0.87727 1.18864 0.86369 0.82726 0.87599 1.90633 1.50185 1.61686 1.42579 1.41880 1.47721 1.04582 1.25039 1.19664 1.29486 0.89795 1.03866 0.87899 1.25258 0.97817 0.96392 0.98466 1.69609 1.43743 1.06279 1.34554 0.85940 0.79802 0.77690 0.80915 1.19942 1.21001 1.19950 0.96164 0.93661 0.89278 0.93445 0.93165 0.93422 0.89218 0.93326 0.97107 0.87593 0.89277 0.77499 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 6.57 37.16 0.24 -2.05 16 2 C -0.02 -0.38 0.77 -154.51 -0.12 -0.49 16 3 C -0.14 -1.93 8.15 37.15 0.30 -1.62 16 4 C -0.12 -2.40 7.42 37.16 0.28 -2.12 16 5 C -0.11 -1.86 5.27 -90.58 -0.48 -2.33 16 6 H 0.10 1.39 8.06 -51.93 -0.42 0.97 16 7 C -0.17 -2.63 9.36 -26.69 -0.25 -2.88 16 8 C -0.17 -3.11 5.94 -91.77 -0.55 -3.65 16 9 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 10 C 0.46 10.40 5.79 -10.99 -0.06 10.34 16 11 O -0.56 -13.65 8.07 5.55 0.04 -13.61 16 12 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 13 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 14 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 17 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H 0.02 0.31 7.93 -51.93 -0.41 -0.10 16 22 H 0.04 0.85 7.53 -51.93 -0.39 0.46 16 23 H 0.09 1.81 3.54 -51.93 -0.18 1.63 16 24 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.61 8.12 -51.92 -0.42 0.19 16 27 H 0.09 1.98 4.18 -52.96 -0.22 1.76 16 28 H 0.05 0.98 7.28 -51.93 -0.38 0.61 16 29 H 0.01 0.18 7.83 -51.93 -0.41 -0.23 16 30 H 0.11 1.78 5.65 -51.93 -0.29 1.49 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 257.75 15.07 3.88 3.88 Total: -1.00 -27.88 257.75 -5.95 -33.83 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.65 Total: 10.46 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.87 Total: -12.64 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.67 Total: -37.92 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.04 Total: -13.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.88 -5.95 -33.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699765757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.218 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds