Wall clock time and date at job start Mon Mar 30 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47340 * 2 1 4 4 H 1.09004 * 109.29933 * 306.17764 * 3 2 1 5 5 C 1.52892 * 109.08807 * 186.70040 * 3 2 1 6 6 H 1.08995 * 109.55701 * 170.72986 * 5 3 2 7 7 C 1.50699 * 109.63131 * 50.25676 * 5 3 2 8 8 H 1.08000 * 120.00613 * 0.77500 * 7 5 3 9 9 C 1.37882 * 120.00114 * 180.77368 * 7 5 3 10 10 N 1.31512 * 119.99770 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00178 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46975 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46934 * 119.99768 * 11 9 7 14 14 H 1.48497 * 109.47450 * 239.99826 * 11 9 7 15 15 C 1.53342 * 108.69312 * 290.47701 * 5 3 2 16 16 C 1.53071 * 108.45286 * 292.53235 * 15 5 3 17 17 C 1.50177 * 109.89108 * 48.87971 * 16 15 5 18 18 O 1.21283 * 118.24517 * 162.39233 * 17 16 15 19 19 N 1.33347 * 123.50883 * 342.42275 * 17 16 15 20 20 C 1.46500 * 117.94701 * 182.21805 * 19 17 16 21 21 H 1.09001 * 109.47082 * 162.44780 * 1 2 3 22 22 H 1.09001 * 109.47170 * 282.44955 * 1 2 3 23 23 H 1.09000 * 109.46918 * 42.44278 * 1 2 3 24 24 H 1.08998 * 109.47338 * 239.99950 * 2 1 3 25 25 H 1.09003 * 109.47247 * 120.00090 * 2 1 3 26 26 H 0.97002 * 120.00365 * 180.02562 * 10 9 7 27 27 H 1.09000 * 109.67344 * 172.78371 * 15 5 3 28 28 H 1.09002 * 109.67653 * 52.28190 * 15 5 3 29 29 H 1.09001 * 109.40226 * 169.01246 * 16 15 5 30 30 H 1.09004 * 109.39869 * 288.83827 * 16 15 5 31 31 H 1.09002 * 109.47033 * 5.45341 * 20 19 17 32 32 H 1.09000 * 109.47198 * 125.44414 * 20 19 17 33 33 H 1.08998 * 109.47601 * 245.44693 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5876 1.9845 -0.8304 5 6 3.5597 1.4355 -0.1686 6 1 3.9130 2.4531 -0.3345 7 6 3.9348 0.5688 -1.3430 8 1 3.1647 0.0809 -1.9220 9 6 5.2613 0.3987 -1.6784 10 7 6.1992 0.9923 -0.9730 11 14 5.7263 -0.6750 -3.1345 12 1 4.4953 -1.2242 -3.7576 13 1 6.4655 0.1384 -4.1332 14 1 6.5877 -1.7922 -2.6708 15 6 4.1933 0.8725 1.1093 16 6 3.9502 1.8654 2.2486 17 6 2.5026 2.2639 2.2789 18 8 2.0691 2.7755 3.2896 19 7 1.6682 2.0849 1.2543 20 6 0.2914 2.5645 1.3983 21 1 -0.3633 -0.9798 -0.3099 22 1 -0.3633 0.2215 1.0035 23 1 -0.3633 0.7584 -0.6935 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 7.1325 0.8730 -1.2091 27 1 5.2650 0.7404 0.9601 28 1 3.7360 -0.0861 1.3542 29 1 4.2178 1.4004 3.1975 30 1 4.5653 2.7519 2.0937 31 1 0.1909 3.1032 2.3405 32 1 0.0508 3.2320 0.5708 33 1 -0.3919 1.7153 1.3905 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709986326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:22 Heat of formation + Delta-G solvation = -59.763777 kcal Electronic energy + Delta-G solvation = -14962.087734 eV Core-core repulsion = 12600.776073 eV Total energy + Delta-G solvation = -2361.311661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.55699 -38.31848 -35.71906 -33.75035 -33.31771 -30.28399 -28.13352 -26.40691 -24.62601 -23.21645 -22.42357 -18.92828 -18.18707 -17.49789 -17.39837 -16.54647 -16.31924 -15.45633 -14.95776 -14.74159 -14.44034 -13.96750 -13.64843 -13.37023 -13.15492 -13.02451 -12.73736 -12.51245 -12.27300 -12.16821 -12.09541 -11.78876 -11.34306 -11.15438 -10.78461 -10.51856 -10.31282 -9.49904 -8.05733 -6.17832 1.45999 1.50249 1.58942 1.66492 2.22734 2.49825 3.23791 3.78228 4.07470 4.18681 4.28634 4.35516 4.45495 4.58579 4.61952 4.74903 4.77624 4.91620 4.97273 5.04739 5.15563 5.27404 5.33010 5.34883 5.56415 5.66244 5.75769 5.90754 6.05416 6.28932 6.60871 6.91371 7.22594 7.50241 8.99836 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.011250 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.869630 B = 2488.271367 C = 3039.416624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.152 3.848 4 H 0.078 0.922 5 C 0.040 3.960 6 H 0.000 1.000 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.015 3.985 10 N -0.916 5.916 11 Si 0.951 3.049 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.286 1.286 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.515 3.485 18 O -0.610 6.610 19 N -0.592 5.592 20 C 0.055 3.945 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.260 0.740 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 -1.600 0.244 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.050 3.950 4 H 0.096 0.904 5 C 0.021 3.979 6 H 0.018 0.982 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.183 4.183 10 N -0.556 5.556 11 Si 0.777 3.223 12 H -0.185 1.185 13 H -0.214 1.214 14 H -0.212 1.212 15 C -0.146 4.146 16 C -0.168 4.168 17 C 0.305 3.695 18 O -0.494 6.494 19 N -0.322 5.322 20 C -0.087 4.087 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.586 -1.334 0.725 8.719 hybrid contribution 0.846 -0.309 -0.675 1.126 sum -7.739 -1.643 0.051 7.912 Atomic orbital electron populations 1.22026 0.94703 1.02280 1.01608 1.21923 0.96278 0.95589 1.02575 1.21199 0.97116 0.93399 0.83296 0.90411 1.18897 0.89331 0.95569 0.94116 0.98231 1.21453 0.92256 1.29119 1.12602 0.90935 1.25669 0.96840 0.96996 0.98838 1.70002 1.00406 1.44584 1.40597 0.85609 0.78414 0.78552 0.79689 1.18529 1.21433 1.21236 1.21624 1.03849 0.95948 0.93161 1.21642 0.91493 1.01827 1.01883 1.20504 0.89495 0.77288 0.82227 1.90571 1.78212 1.47967 1.32665 1.47442 1.11906 1.57265 1.15582 1.22201 0.82251 1.01073 1.03134 0.91935 0.92407 0.91874 0.90136 0.93370 0.93116 0.90406 0.93606 0.88726 0.89578 0.91106 0.90762 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 8.52 71.98 0.61 -3.15 16 2 C -0.13 -4.16 5.02 30.59 0.15 -4.01 16 3 C 0.15 5.66 2.31 45.09 0.10 5.76 16 4 H 0.08 2.76 7.98 -2.39 -0.02 2.74 16 5 C 0.04 1.81 1.97 -11.46 -0.02 1.79 16 6 H 0.00 -0.02 8.12 -2.39 -0.02 -0.04 16 7 C -0.52 -25.13 7.75 25.60 0.20 -24.93 16 8 H 0.07 3.36 6.07 -2.91 -0.02 3.34 16 9 C 0.02 0.78 5.29 84.66 0.45 1.23 16 10 N -0.92 -49.54 11.31 21.45 0.24 -49.30 16 11 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 15 C -0.11 -4.78 5.11 30.73 0.16 -4.62 16 16 C -0.13 -5.21 6.03 29.71 0.18 -5.03 16 17 C 0.51 21.19 7.47 87.71 0.66 21.84 16 18 O -0.61 -27.52 15.96 -3.04 -0.05 -27.57 16 19 N -0.59 -21.57 2.81 -827.35 -2.33 -23.90 16 20 C 0.06 1.61 9.80 127.77 1.25 2.86 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.40 5.78 -2.39 -0.01 1.39 16 23 H 0.06 1.45 7.92 -2.39 -0.02 1.43 16 24 H 0.08 2.85 5.80 -2.39 -0.01 2.84 16 25 H 0.05 1.70 6.78 -2.39 -0.02 1.68 16 26 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 27 H 0.08 3.91 5.95 -2.39 -0.01 3.89 16 28 H 0.05 1.97 6.50 -2.39 -0.02 1.95 16 29 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.07 2.25 6.62 -2.39 -0.02 2.23 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.16 4.71 -2.39 -0.01 2.15 16 Total: -1.00 -57.68 253.31 4.73 -52.95 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.10 Total: 13.49 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 3.74 Total: -8.25 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.09 Total: -73.20 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -57.68 4.73 -52.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.812 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds