Wall clock time and date at job start Mon Mar 30 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46777 * 2 1 4 4 H 1.08995 * 109.12762 * 177.67697 * 3 2 1 5 5 C 1.52922 * 109.29767 * 297.15338 * 3 2 1 6 6 H 1.08999 * 109.60801 * 51.30932 * 5 3 2 7 7 C 1.50699 * 109.60603 * 290.98245 * 5 3 2 8 8 H 1.08005 * 119.99662 * 0.02562 * 7 5 3 9 9 C 1.37872 * 120.00303 * 179.97438 * 7 5 3 10 10 N 1.31515 * 120.00380 * 180.02562 * 9 7 5 11 11 Si 1.86796 * 119.99972 * 0.02562 * 9 7 5 12 12 H 1.48501 * 109.47569 * 89.99685 * 11 9 7 13 13 H 1.48505 * 109.47005 * 209.99454 * 11 9 7 14 14 H 1.48498 * 109.47060 * 329.99486 * 11 9 7 15 15 C 1.53345 * 108.67406 * 171.06612 * 5 3 2 16 16 C 1.53069 * 108.42443 * 292.46878 * 15 5 3 17 17 C 1.50157 * 109.94873 * 48.69320 * 16 15 5 18 18 O 1.21284 * 118.23305 * 162.62872 * 17 16 15 19 19 N 1.33357 * 123.52053 * 342.89463 * 17 16 15 20 20 C 1.46496 * 117.94806 * 181.94860 * 19 17 16 21 21 H 1.09000 * 109.47015 * 65.41508 * 1 2 3 22 22 H 1.09003 * 109.46617 * 185.41529 * 1 2 3 23 23 H 1.08995 * 109.47488 * 305.41394 * 1 2 3 24 24 H 1.08993 * 109.47072 * 240.00381 * 2 1 3 25 25 H 1.08995 * 109.47348 * 119.99444 * 2 1 3 26 26 H 0.96998 * 120.00401 * 180.02562 * 10 9 7 27 27 H 1.09000 * 109.67594 * 52.20279 * 15 5 3 28 28 H 1.09004 * 109.67772 * 172.73427 * 15 5 3 29 29 H 1.09002 * 109.39807 * 169.02468 * 16 15 5 30 30 H 1.08996 * 109.40167 * 288.85032 * 16 15 5 31 31 H 1.09000 * 109.47700 * 264.54296 * 20 19 17 32 32 H 1.09001 * 109.46933 * 24.54117 * 20 19 17 33 33 H 1.08994 * 109.47158 * 144.54048 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1291 1.4364 0.0417 5 6 1.5874 2.1386 -1.2842 6 1 0.5136 2.0038 -1.4144 7 6 2.3175 1.5489 -2.4633 8 1 3.0341 0.7550 -2.3126 9 6 2.0699 2.0220 -3.7344 10 7 2.7067 1.5070 -4.7634 11 14 0.8300 3.3946 -3.9951 12 1 1.5191 4.7072 -3.9091 13 1 0.2059 3.2500 -5.3348 14 1 -0.2208 3.3177 -2.9486 15 6 1.9083 3.6339 -1.1716 16 6 1.0148 4.2400 -0.0866 17 6 1.0691 3.3945 1.1532 18 8 0.6896 3.8818 2.1970 19 7 1.5168 2.1385 1.1689 20 6 1.4751 1.4106 2.4396 21 1 -0.3633 0.4276 -0.9345 22 1 -0.3633 -1.0231 0.0970 23 1 -0.3634 0.5955 0.8375 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 2.5329 1.8402 -5.6577 27 1 2.9557 3.7650 -0.9000 28 1 1.7118 4.1243 -2.1251 29 1 1.3590 5.2481 0.1444 30 1 -0.0134 4.2819 -0.4458 31 1 2.4426 1.4892 2.9354 32 1 0.7033 1.8395 3.0788 33 1 1.2482 0.3615 2.2500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709986329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:25 Heat of formation + Delta-G solvation = -39.745447 kcal Electronic energy + Delta-G solvation = -15093.575927 eV Core-core repulsion = 12733.132326 eV Total energy + Delta-G solvation = -2360.443601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.18066 -36.87319 -34.27263 -32.39925 -31.85598 -28.65232 -26.91640 -25.11301 -23.47365 -21.30858 -20.62293 -17.75113 -17.08423 -16.01565 -15.73130 -15.23644 -14.54314 -14.05524 -13.63926 -13.55923 -12.79439 -12.70107 -12.25316 -12.15833 -11.93743 -11.60602 -11.33664 -10.88291 -10.81135 -10.61254 -10.47037 -10.09805 -9.81485 -9.73956 -9.16412 -8.96445 -8.63550 -8.19240 -6.18951 -4.19788 3.11611 3.18520 3.30137 3.31983 3.56579 4.30088 5.06059 5.13341 5.32286 5.45150 5.59111 5.67163 5.68485 5.75395 5.83660 5.94341 6.07600 6.14534 6.20085 6.30422 6.40101 6.40802 6.60534 6.73135 6.79069 6.88762 7.04044 7.31879 7.53934 7.98150 8.36415 8.64245 8.82718 9.42070 10.93375 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.013327 C = 0.010864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.163100 B = 2100.514266 C = 2576.702676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.154 3.846 4 H 0.071 0.929 5 C 0.008 3.992 6 H 0.041 0.959 7 C -0.511 4.511 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.880 3.120 12 H -0.276 1.276 13 H -0.296 1.296 14 H -0.264 1.264 15 C -0.129 4.129 16 C -0.139 4.139 17 C 0.521 3.479 18 O -0.580 6.580 19 N -0.595 5.595 20 C 0.069 3.931 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -0.348 8.032 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.089 0.911 5 C -0.011 4.011 6 H 0.059 0.941 7 C -0.549 4.549 8 H 0.097 0.903 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.710 3.290 12 H -0.203 1.203 13 H -0.223 1.223 14 H -0.189 1.189 15 C -0.166 4.166 16 C -0.178 4.178 17 C 0.310 3.690 18 O -0.461 6.461 19 N -0.327 5.327 20 C -0.074 4.074 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.973 -0.108 8.341 8.856 hybrid contribution -0.535 0.758 -0.410 1.014 sum -3.508 0.651 7.931 8.697 Atomic orbital electron populations 1.21793 0.96184 1.00486 1.02270 1.21804 0.96291 0.96071 1.02265 1.21141 0.97524 0.91798 0.84399 0.91149 1.19550 0.98239 0.90654 0.92696 0.94076 1.20796 1.24451 1.20693 0.88988 0.90303 1.24949 0.95477 0.96387 0.95983 1.69873 1.41845 1.42356 0.99194 0.86946 0.82300 0.82632 0.77096 1.20320 1.22305 1.18905 1.22167 0.98978 0.99018 0.96478 1.21716 1.02932 0.99070 0.94110 1.20175 0.76137 0.81973 0.90666 1.90620 1.50329 1.71453 1.33723 1.47463 1.61638 1.12824 1.10742 1.21748 1.01923 0.97244 0.86463 0.91738 0.93560 0.93424 0.89110 0.92892 0.92471 0.91514 0.92073 0.89305 0.89216 0.93334 0.90730 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.06 37.16 0.34 -2.03 16 2 C -0.13 -2.07 5.00 -26.73 -0.13 -2.20 16 3 C 0.15 2.82 2.43 -68.37 -0.17 2.66 16 4 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 5 C 0.01 0.16 1.06 -91.63 -0.10 0.07 16 6 H 0.04 0.91 5.24 -51.93 -0.27 0.64 16 7 C -0.51 -12.89 8.42 -34.44 -0.29 -13.18 16 8 H 0.08 2.13 7.59 -52.48 -0.40 1.73 16 9 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 10 N -0.90 -25.74 13.96 55.43 0.77 -24.97 16 11 Si 0.88 20.53 24.46 -169.99 -4.16 16.38 16 12 H -0.28 -6.29 6.82 56.52 0.39 -5.90 16 13 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.26 -5.87 6.53 56.52 0.37 -5.50 16 15 C -0.13 -2.60 4.82 -26.52 -0.13 -2.73 16 16 C -0.14 -2.53 6.03 -28.11 -0.17 -2.70 16 17 C 0.52 10.10 7.47 -11.88 -0.09 10.02 16 18 O -0.58 -12.46 16.13 5.55 0.09 -12.37 16 19 N -0.60 -10.56 2.43 -175.18 -0.43 -10.99 16 20 C 0.07 1.03 9.20 59.84 0.55 1.58 16 21 H 0.06 1.13 6.58 -51.93 -0.34 0.79 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.74 6.43 -51.93 -0.33 0.41 16 24 H 0.09 1.63 7.16 -51.93 -0.37 1.26 16 25 H 0.05 0.74 6.48 -51.93 -0.34 0.40 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.07 1.32 8.13 -51.93 -0.42 0.89 16 28 H 0.06 1.30 3.38 -51.93 -0.18 1.13 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.16 7.03 -51.93 -0.36 0.79 16 33 H 0.07 0.95 5.09 -51.93 -0.26 0.68 16 LS Contribution 248.47 15.07 3.74 3.74 Total: -1.00 -28.85 248.47 -4.84 -33.69 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.58 Total: 1.15 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.28 Total: -6.63 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.35 Total: -35.95 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.16 Total: 16.38 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.85 -4.84 -33.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.056 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds