Wall clock time and date at job start Mon Mar 30 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46777 * 2 1 4 4 H 1.08995 * 109.12762 * 177.67697 * 3 2 1 5 5 C 1.52922 * 109.29767 * 297.15338 * 3 2 1 6 6 H 1.08999 * 109.60801 * 51.30932 * 5 3 2 7 7 C 1.50699 * 109.60603 * 290.98245 * 5 3 2 8 8 H 1.08005 * 119.99662 * 0.02562 * 7 5 3 9 9 C 1.37872 * 120.00303 * 179.97438 * 7 5 3 10 10 N 1.31515 * 120.00380 * 180.02562 * 9 7 5 11 11 Si 1.86796 * 119.99972 * 0.02562 * 9 7 5 12 12 H 1.48501 * 109.47569 * 89.99685 * 11 9 7 13 13 H 1.48505 * 109.47005 * 209.99454 * 11 9 7 14 14 H 1.48498 * 109.47060 * 329.99486 * 11 9 7 15 15 C 1.53345 * 108.67406 * 171.06612 * 5 3 2 16 16 C 1.53069 * 108.42443 * 292.46878 * 15 5 3 17 17 C 1.50157 * 109.94873 * 48.69320 * 16 15 5 18 18 O 1.21284 * 118.23305 * 162.62872 * 17 16 15 19 19 N 1.33357 * 123.52053 * 342.89463 * 17 16 15 20 20 C 1.46496 * 117.94806 * 181.94860 * 19 17 16 21 21 H 1.09000 * 109.47015 * 65.41508 * 1 2 3 22 22 H 1.09003 * 109.46617 * 185.41529 * 1 2 3 23 23 H 1.08995 * 109.47488 * 305.41394 * 1 2 3 24 24 H 1.08993 * 109.47072 * 240.00381 * 2 1 3 25 25 H 1.08995 * 109.47348 * 119.99444 * 2 1 3 26 26 H 0.96998 * 120.00401 * 180.02562 * 10 9 7 27 27 H 1.09000 * 109.67594 * 52.20279 * 15 5 3 28 28 H 1.09004 * 109.67772 * 172.73427 * 15 5 3 29 29 H 1.09002 * 109.39807 * 169.02468 * 16 15 5 30 30 H 1.08996 * 109.40167 * 288.85032 * 16 15 5 31 31 H 1.09000 * 109.47700 * 264.54296 * 20 19 17 32 32 H 1.09001 * 109.46933 * 24.54117 * 20 19 17 33 33 H 1.08994 * 109.47158 * 144.54048 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1291 1.4364 0.0417 5 6 1.5874 2.1386 -1.2842 6 1 0.5136 2.0038 -1.4144 7 6 2.3175 1.5489 -2.4633 8 1 3.0341 0.7550 -2.3126 9 6 2.0699 2.0220 -3.7344 10 7 2.7067 1.5070 -4.7634 11 14 0.8300 3.3946 -3.9951 12 1 1.5191 4.7072 -3.9091 13 1 0.2059 3.2500 -5.3348 14 1 -0.2208 3.3177 -2.9486 15 6 1.9083 3.6339 -1.1716 16 6 1.0148 4.2400 -0.0866 17 6 1.0691 3.3945 1.1532 18 8 0.6896 3.8818 2.1970 19 7 1.5168 2.1385 1.1689 20 6 1.4751 1.4106 2.4396 21 1 -0.3633 0.4276 -0.9345 22 1 -0.3633 -1.0231 0.0970 23 1 -0.3634 0.5955 0.8375 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 2.5329 1.8402 -5.6577 27 1 2.9557 3.7650 -0.9000 28 1 1.7118 4.1243 -2.1251 29 1 1.3590 5.2481 0.1444 30 1 -0.0134 4.2819 -0.4458 31 1 2.4426 1.4892 2.9354 32 1 0.7033 1.8395 3.0788 33 1 1.2482 0.3615 2.2500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709986329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:25 Heat of formation + Delta-G solvation = -58.016937 kcal Electronic energy + Delta-G solvation = -15094.368238 eV Core-core repulsion = 12733.132326 eV Total energy + Delta-G solvation = -2361.235912 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.67252 -38.43440 -35.86352 -34.16860 -33.41134 -30.27192 -28.29360 -26.65475 -25.12721 -22.89996 -22.10273 -19.29811 -18.93571 -17.56373 -17.23652 -16.72147 -16.29702 -15.54299 -15.14286 -15.06280 -14.61719 -14.17832 -13.86370 -13.56897 -13.34212 -13.04371 -12.80137 -12.53690 -12.36035 -12.08841 -12.05312 -11.68792 -11.56306 -11.32794 -10.97330 -10.75233 -10.45226 -9.62212 -8.25448 -6.28606 1.33206 1.39959 1.47781 1.62726 2.16109 2.35092 3.09289 3.63973 3.88007 3.98824 4.08825 4.31570 4.36223 4.41265 4.58220 4.62354 4.68354 4.80190 4.86876 4.91289 4.92852 5.06380 5.08222 5.28053 5.39904 5.42432 5.57828 5.65065 5.69083 6.27045 6.53242 6.78274 7.16443 7.36452 8.90026 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.013327 C = 0.010864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.163100 B = 2100.514266 C = 2576.702676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.158 3.842 4 H 0.066 0.934 5 C 0.007 3.993 6 H 0.039 0.961 7 C -0.500 4.500 8 H 0.049 0.951 9 C 0.020 3.980 10 N -0.945 5.945 11 Si 0.931 3.069 12 H -0.265 1.265 13 H -0.304 1.304 14 H -0.245 1.245 15 C -0.127 4.127 16 C -0.134 4.134 17 C 0.516 3.484 18 O -0.602 6.602 19 N -0.592 5.592 20 C 0.066 3.934 21 H 0.041 0.959 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.264 0.736 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 0.029 9.625 10.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.056 3.944 4 H 0.084 0.916 5 C -0.012 4.012 6 H 0.057 0.943 7 C -0.539 4.539 8 H 0.067 0.933 9 C -0.177 4.177 10 N -0.585 5.585 11 Si 0.759 3.241 12 H -0.192 1.192 13 H -0.232 1.232 14 H -0.169 1.169 15 C -0.165 4.165 16 C -0.174 4.174 17 C 0.306 3.694 18 O -0.486 6.486 19 N -0.323 5.323 20 C -0.076 4.076 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.867 0.259 9.965 10.692 hybrid contribution -0.193 0.553 -0.864 1.044 sum -4.060 0.813 9.101 9.998 Atomic orbital electron populations 1.21745 0.95467 1.01882 1.01168 1.21770 0.96832 0.94669 1.02818 1.20968 0.97277 0.92690 0.83494 0.91632 1.19464 0.97388 0.91729 0.92623 0.94348 1.21020 1.23185 1.19293 0.90374 0.93261 1.25683 0.97374 0.98792 0.95885 1.70010 1.44237 1.44546 0.99694 0.86098 0.80685 0.80353 0.76953 1.19151 1.23178 1.16858 1.22059 0.99631 0.97944 0.96864 1.21703 1.02983 0.99806 0.92867 1.20338 0.76069 0.82412 0.90606 1.90616 1.51600 1.71949 1.34432 1.47458 1.60789 1.12572 1.11438 1.21933 1.02596 0.98014 0.85013 0.94010 0.91265 0.92976 0.91145 0.89752 0.92657 0.91442 0.92969 0.87306 0.88303 0.91983 0.91248 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.06 71.98 0.65 -3.58 16 2 C -0.12 -3.77 5.00 30.60 0.15 -3.62 16 3 C 0.16 5.54 2.43 45.11 0.11 5.65 16 4 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 5 C 0.01 0.29 1.06 -11.45 -0.01 0.28 16 6 H 0.04 1.63 5.24 -2.39 -0.01 1.62 16 7 C -0.50 -25.41 8.42 25.60 0.22 -25.19 16 8 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 9 C 0.02 1.09 5.45 84.65 0.46 1.56 16 10 N -0.94 -55.64 13.96 21.45 0.30 -55.34 16 11 Si 0.93 41.85 24.46 68.60 1.68 43.52 16 12 H -0.27 -11.38 6.82 99.48 0.68 -10.70 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 15 C -0.13 -4.90 4.82 30.73 0.15 -4.75 16 16 C -0.13 -4.53 6.03 29.70 0.18 -4.35 16 17 C 0.52 18.69 7.47 87.71 0.66 19.35 16 18 O -0.60 -24.44 16.13 -3.04 -0.05 -24.49 16 19 N -0.59 -19.47 2.43 -827.33 -2.01 -21.48 16 20 C 0.07 1.76 9.20 127.77 1.17 2.93 16 21 H 0.04 1.40 6.58 -2.39 -0.02 1.38 16 22 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.47 6.43 -2.39 -0.02 1.45 16 24 H 0.07 2.48 7.16 -2.39 -0.02 2.46 16 25 H 0.08 2.07 6.48 -2.39 -0.02 2.05 16 26 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.07 2.55 8.13 -2.39 -0.02 2.53 16 28 H 0.05 2.11 3.38 -2.39 -0.01 2.10 16 29 H 0.11 3.25 8.14 -2.39 -0.02 3.24 16 30 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.95 7.03 -2.39 -0.02 1.94 16 33 H 0.10 2.08 5.09 -2.39 -0.01 2.07 16 Total: -1.00 -61.39 248.47 4.66 -56.73 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.01 Total: 12.80 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 3.74 Total: -11.73 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.71 Total: -76.83 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.68 Total: 43.52 kcal Total: -61.39 4.66 -56.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.289 kcal (2) G-P(sol) polarization free energy of solvation -61.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds