Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.53007 * 109.47076 * 120.00053 * 2 1 3 5 5 H 1.09000 * 110.21483 * 305.14248 * 4 2 1 6 6 C 1.54480 * 110.24349 * 183.12377 * 4 2 1 7 7 H 1.09001 * 110.96640 * 97.42983 * 6 4 2 8 8 C 1.50699 * 110.97169 * 333.70043 * 6 4 2 9 9 H 1.07993 * 120.00006 * 354.75482 * 8 6 4 10 10 C 1.37884 * 119.99583 * 174.74832 * 8 6 4 11 11 N 1.31512 * 120.00393 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99387 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47443 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46969 * 120.00643 * 12 10 8 15 15 H 1.48501 * 109.47298 * 239.99964 * 12 10 8 16 16 C 1.54785 * 101.69073 * 215.38896 * 6 4 2 17 17 C 1.51274 * 104.12316 * 25.10129 * 16 6 4 18 18 O 1.21275 * 124.94468 * 163.66991 * 17 16 6 19 19 N 1.34425 * 110.11256 * 343.41324 * 17 16 6 20 20 C 1.46507 * 124.34821 * 179.84447 * 19 17 16 21 21 H 1.08999 * 109.46963 * 305.71166 * 1 2 3 22 22 H 1.09000 * 109.47070 * 65.71559 * 1 2 3 23 23 H 1.08999 * 109.46741 * 185.70983 * 1 2 3 24 24 H 1.09002 * 109.47425 * 239.99869 * 2 1 3 25 25 H 1.09002 * 109.47183 * 60.00151 * 3 2 1 26 26 H 1.09002 * 109.47524 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47074 * 299.99868 * 3 2 1 28 28 H 0.96998 * 120.00096 * 179.97438 * 11 10 8 29 29 H 1.08998 * 110.61670 * 266.40238 * 16 6 4 30 30 H 1.09002 * 110.42474 * 143.71288 * 16 6 4 31 31 H 1.09000 * 109.47085 * 3.98344 * 20 19 17 32 32 H 1.08997 * 109.47308 * 123.98611 * 20 19 17 33 33 H 1.08998 * 109.46495 * 243.99001 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6104 -0.2726 2.1450 6 6 3.5826 -0.6637 1.3074 7 1 3.9185 0.1465 1.9546 8 6 4.1697 -0.5258 -0.0736 9 1 3.5265 -0.5661 -0.9402 10 6 5.5280 -0.3481 -0.2307 11 7 6.3112 -0.2994 0.8246 12 14 6.2556 -0.1780 -1.9427 13 1 5.1708 -0.2670 -2.9529 14 1 6.9366 1.1363 -2.0627 15 1 7.2382 -1.2673 -2.1735 16 6 3.9249 -2.0409 1.9254 17 6 2.7433 -2.9126 1.5615 18 8 2.7337 -4.1245 1.6078 19 7 1.7037 -2.1483 1.1846 20 6 0.4019 -2.6726 0.7641 21 1 -0.3633 0.5999 0.8344 22 1 -0.3633 0.4226 -0.9367 23 1 -0.3633 -1.0226 0.1022 24 1 1.8934 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 7.2668 -0.1748 0.7140 29 1 4.0218 -1.9624 3.0082 30 1 4.8408 -2.4374 1.4873 31 1 0.3940 -3.7570 0.8744 32 1 -0.3822 -2.2386 1.3845 33 1 0.2254 -2.4123 -0.2795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709986411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -33.710683 kcal Electronic energy + Delta-G solvation = -15034.964949 eV Core-core repulsion = 12674.783035 eV Total energy + Delta-G solvation = -2360.181914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80650 -36.60717 -33.48908 -33.22556 -31.20361 -26.85550 -26.51950 -25.80750 -24.20439 -20.82503 -19.60440 -18.42039 -16.77558 -15.88680 -15.06941 -14.60500 -14.51771 -13.60750 -13.28496 -13.05960 -12.75108 -12.38197 -12.12105 -11.74032 -11.61119 -11.54148 -11.04952 -10.94560 -10.70448 -10.60472 -10.31128 -10.07059 -9.95662 -9.32155 -8.94551 -8.83263 -8.43690 -7.88997 -6.13040 -4.15286 3.25148 3.34816 3.37203 3.51757 3.87156 4.36084 5.18736 5.34792 5.44051 5.55281 5.67936 5.79341 5.89533 6.02358 6.10457 6.12618 6.33337 6.36245 6.39879 6.48107 6.60246 6.62905 6.76013 7.04852 7.30438 7.34764 7.40740 7.57863 7.84191 7.98458 8.25071 8.85589 9.09021 9.48471 10.96201 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.013874 C = 0.010862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.445603 B = 2017.693159 C = 2577.290731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.088 4.088 3 C -0.146 4.146 4 C 0.139 3.861 5 H 0.055 0.945 6 C 0.050 3.950 7 H 0.058 0.942 8 C -0.510 4.510 9 H 0.069 0.931 10 C 0.065 3.935 11 N -0.885 5.885 12 Si 0.888 3.112 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.141 4.141 17 C 0.524 3.476 18 O -0.569 6.569 19 N -0.616 5.616 20 C 0.092 3.908 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.097 0.903 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 2.364 -0.342 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.107 4.107 3 C -0.204 4.204 4 C 0.036 3.964 5 H 0.073 0.927 6 C 0.032 3.968 7 H 0.076 0.924 8 C -0.548 4.548 9 H 0.087 0.913 10 C -0.138 4.138 11 N -0.523 5.523 12 Si 0.716 3.284 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.182 4.182 17 C 0.314 3.686 18 O -0.449 6.449 19 N -0.349 5.349 20 C -0.050 4.050 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.592 1.739 -0.283 8.771 hybrid contribution 0.387 0.143 -0.928 1.015 sum -8.206 1.883 -1.211 8.506 Atomic orbital electron populations 1.22542 0.97430 1.02657 1.00756 1.21218 0.93036 0.97284 0.99119 1.21923 1.05131 0.94079 0.99223 1.21989 0.99313 0.78791 0.96348 0.92748 1.19756 0.86689 0.92762 0.97640 0.92409 1.21178 0.92204 1.49760 0.91663 0.91257 1.24979 0.97280 0.94955 0.96571 1.69953 1.04641 1.49053 1.28628 0.86588 0.79347 0.77669 0.84792 1.19691 1.20982 1.21040 1.22499 0.96715 0.98812 1.00151 1.21486 0.85379 0.87244 0.74461 1.90574 1.83941 1.13920 1.56439 1.48238 1.12020 1.08330 1.66359 1.21626 0.84681 0.99505 0.99214 0.93558 0.93582 0.91162 0.89917 0.94366 0.88475 0.94361 0.92828 0.91101 0.87991 0.91177 0.92679 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.83 37.16 0.33 -2.18 16 2 C -0.09 -1.52 1.89 -90.62 -0.17 -1.69 16 3 C -0.15 -2.49 8.68 37.16 0.32 -2.17 16 4 C 0.14 2.63 2.86 -67.01 -0.19 2.44 16 5 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 6 C 0.05 1.13 2.13 -90.05 -0.19 0.94 16 7 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 8 C -0.51 -12.47 5.84 -34.44 -0.20 -12.67 16 9 H 0.07 1.69 5.22 -52.49 -0.27 1.42 16 10 C 0.06 1.66 5.23 -17.82 -0.09 1.57 16 11 N -0.89 -23.77 12.86 55.43 0.71 -23.06 16 12 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.14 -3.25 6.21 -26.66 -0.17 -3.42 16 17 C 0.52 11.98 8.02 -10.86 -0.09 11.90 16 18 O -0.57 -14.44 17.35 5.56 0.10 -14.34 16 19 N -0.62 -12.07 3.18 -172.70 -0.55 -12.62 16 20 C 0.09 1.45 8.93 59.85 0.53 1.99 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.94 3.22 -51.93 -0.17 0.77 16 24 H 0.08 1.62 6.13 -51.93 -0.32 1.30 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 1.93 5.60 -51.93 -0.29 1.64 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.10 2.63 7.49 -51.93 -0.39 2.24 16 31 H 0.07 1.14 7.54 -51.93 -0.39 0.75 16 32 H 0.05 0.74 7.43 -51.93 -0.39 0.35 16 33 H 0.06 0.89 6.49 -51.93 -0.34 0.55 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -27.98 257.27 -5.45 -33.43 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.65 Total: 0.72 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.16 Total: -35.68 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.10 Total: -14.34 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.98 -5.45 -33.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.285 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds