Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.53007 * 109.47076 * 120.00053 * 2 1 3 5 5 H 1.09000 * 110.21483 * 305.14248 * 4 2 1 6 6 C 1.54480 * 110.24349 * 183.12377 * 4 2 1 7 7 H 1.09001 * 110.96640 * 97.42983 * 6 4 2 8 8 C 1.50699 * 110.97169 * 333.70043 * 6 4 2 9 9 H 1.07993 * 120.00006 * 354.75482 * 8 6 4 10 10 C 1.37884 * 119.99583 * 174.74832 * 8 6 4 11 11 N 1.31512 * 120.00393 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99387 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47443 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46969 * 120.00643 * 12 10 8 15 15 H 1.48501 * 109.47298 * 239.99964 * 12 10 8 16 16 C 1.54785 * 101.69073 * 215.38896 * 6 4 2 17 17 C 1.51274 * 104.12316 * 25.10129 * 16 6 4 18 18 O 1.21275 * 124.94468 * 163.66991 * 17 16 6 19 19 N 1.34425 * 110.11256 * 343.41324 * 17 16 6 20 20 C 1.46507 * 124.34821 * 179.84447 * 19 17 16 21 21 H 1.08999 * 109.46963 * 305.71166 * 1 2 3 22 22 H 1.09000 * 109.47070 * 65.71559 * 1 2 3 23 23 H 1.08999 * 109.46741 * 185.70983 * 1 2 3 24 24 H 1.09002 * 109.47425 * 239.99869 * 2 1 3 25 25 H 1.09002 * 109.47183 * 60.00151 * 3 2 1 26 26 H 1.09002 * 109.47524 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47074 * 299.99868 * 3 2 1 28 28 H 0.96998 * 120.00096 * 179.97438 * 11 10 8 29 29 H 1.08998 * 110.61670 * 266.40238 * 16 6 4 30 30 H 1.09002 * 110.42474 * 143.71288 * 16 6 4 31 31 H 1.09000 * 109.47085 * 3.98344 * 20 19 17 32 32 H 1.08997 * 109.47308 * 123.98611 * 20 19 17 33 33 H 1.08998 * 109.46495 * 243.99001 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6104 -0.2726 2.1450 6 6 3.5826 -0.6637 1.3074 7 1 3.9185 0.1465 1.9546 8 6 4.1697 -0.5258 -0.0736 9 1 3.5265 -0.5661 -0.9402 10 6 5.5280 -0.3481 -0.2307 11 7 6.3112 -0.2994 0.8246 12 14 6.2556 -0.1780 -1.9427 13 1 5.1708 -0.2670 -2.9529 14 1 6.9366 1.1363 -2.0627 15 1 7.2382 -1.2673 -2.1735 16 6 3.9249 -2.0409 1.9254 17 6 2.7433 -2.9126 1.5615 18 8 2.7337 -4.1245 1.6078 19 7 1.7037 -2.1483 1.1846 20 6 0.4019 -2.6726 0.7641 21 1 -0.3633 0.5999 0.8344 22 1 -0.3633 0.4226 -0.9367 23 1 -0.3633 -1.0226 0.1022 24 1 1.8934 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 7.2668 -0.1748 0.7140 29 1 4.0218 -1.9624 3.0082 30 1 4.8408 -2.4374 1.4873 31 1 0.3940 -3.7570 0.8744 32 1 -0.3822 -2.2386 1.3845 33 1 0.2254 -2.4123 -0.2795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709986411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -50.655605 kcal Electronic energy + Delta-G solvation = -15035.699736 eV Core-core repulsion = 12674.783035 eV Total energy + Delta-G solvation = -2360.916701 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48656 -38.32599 -35.26663 -34.74187 -32.96697 -28.31976 -28.16452 -27.31303 -25.89343 -22.43683 -21.23129 -20.08014 -18.52097 -17.57050 -16.83823 -16.41168 -16.15282 -15.11739 -14.74649 -14.68402 -14.37412 -13.92578 -13.79700 -13.32393 -12.99740 -12.81553 -12.78815 -12.72264 -12.50402 -12.18971 -12.06789 -11.54225 -11.35151 -10.97361 -10.77021 -10.62567 -10.37069 -9.46659 -8.10376 -6.14769 1.41071 1.46407 1.53834 1.71520 2.31961 2.45537 3.21919 3.76536 4.03516 4.14071 4.37811 4.45074 4.59940 4.63089 4.72913 4.76717 4.81471 4.87068 5.00094 5.04897 5.20155 5.29199 5.35748 5.54926 5.62409 5.67579 5.82965 5.90478 5.92437 6.29523 6.35575 6.91051 7.34294 7.50498 8.99133 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.013874 C = 0.010862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.445603 B = 2017.693159 C = 2577.290731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.142 4.142 4 C 0.143 3.857 5 H 0.077 0.923 6 C 0.047 3.953 7 H 0.042 0.958 8 C -0.502 4.502 9 H 0.070 0.930 10 C 0.018 3.982 11 N -0.917 5.917 12 Si 0.939 3.061 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.293 1.293 16 C -0.140 4.140 17 C 0.517 3.483 18 O -0.600 6.600 19 N -0.607 5.607 20 C 0.085 3.915 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.259 0.741 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 3.198 -0.930 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.103 4.103 3 C -0.199 4.199 4 C 0.040 3.960 5 H 0.095 0.905 6 C 0.028 3.972 7 H 0.060 0.940 8 C -0.540 4.540 9 H 0.088 0.912 10 C -0.182 4.182 11 N -0.557 5.557 12 Si 0.766 3.234 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.220 1.220 16 C -0.180 4.180 17 C 0.307 3.693 18 O -0.484 6.484 19 N -0.339 5.339 20 C -0.055 4.055 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.970 2.603 -0.892 11.310 hybrid contribution 1.074 -0.089 -0.731 1.302 sum -9.896 2.514 -1.623 10.338 Atomic orbital electron populations 1.22458 0.94168 1.03788 1.02213 1.21153 0.95698 0.96682 0.96804 1.21826 1.02845 0.94378 1.00887 1.21994 0.96723 0.78794 0.98452 0.90500 1.19677 0.89600 0.91679 0.96270 0.94005 1.21421 0.92078 1.47870 0.92644 0.91194 1.25604 0.98019 0.95440 0.99099 1.70051 1.04608 1.50869 1.30123 0.85785 0.78547 0.77250 0.81800 1.18966 1.20609 1.21968 1.22386 0.95796 0.99200 1.00667 1.21366 0.86168 0.86840 0.74916 1.90548 1.84585 1.15051 1.58194 1.48294 1.12671 1.08146 1.64800 1.21952 0.83300 0.99360 1.00927 0.92079 0.92233 0.90204 0.92333 0.92720 0.91904 0.92701 0.93152 0.90078 0.91447 0.91875 0.89145 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.83 71.98 0.64 -3.37 16 2 C -0.08 -2.69 1.89 -10.79 -0.02 -2.71 16 3 C -0.14 -4.49 8.68 71.98 0.63 -3.86 16 4 C 0.14 5.13 2.86 45.45 0.13 5.26 16 5 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 6 C 0.05 2.09 2.13 -10.43 -0.02 2.07 16 7 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 8 C -0.50 -24.64 5.84 25.60 0.15 -24.50 16 9 H 0.07 3.39 5.22 -2.91 -0.02 3.37 16 10 C 0.02 0.91 5.23 84.66 0.44 1.36 16 11 N -0.92 -50.50 12.86 21.45 0.28 -50.22 16 12 Si 0.94 42.04 29.54 68.60 2.03 44.07 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 16 C -0.14 -6.54 6.21 30.64 0.19 -6.35 16 17 C 0.52 23.50 8.02 87.89 0.71 24.20 16 18 O -0.60 -30.60 17.35 -3.01 -0.05 -30.65 16 19 N -0.61 -22.54 3.18 -818.90 -2.61 -25.15 16 20 C 0.09 2.40 8.93 127.77 1.14 3.54 16 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.73 3.22 -2.39 -0.01 1.72 16 24 H 0.06 2.17 6.13 -2.39 -0.01 2.15 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 2.44 5.60 -2.39 -0.01 2.43 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.07 3.61 7.49 -2.39 -0.02 3.59 16 31 H 0.06 1.91 7.54 -2.39 -0.02 1.89 16 32 H 0.09 1.97 7.43 -2.39 -0.02 1.95 16 33 H 0.08 1.97 6.49 -2.39 -0.02 1.95 16 Total: -1.00 -60.50 257.27 4.71 -55.78 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.09 Total: 10.52 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 3.98 Total: -4.35 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -2.33 Total: -75.37 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -60.50 4.71 -55.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.129 kcal (2) G-P(sol) polarization free energy of solvation -60.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds