Wall clock time and date at job start Mon Mar 30 2020 02:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47009 * 2 1 4 4 C 1.53004 * 109.47076 * 119.99802 * 2 1 3 5 5 H 1.08994 * 109.29562 * 299.96528 * 4 2 1 6 6 N 1.45755 * 109.13298 * 180.47898 * 4 2 1 7 7 C 1.33353 * 124.10938 * 220.69850 * 6 4 2 8 8 O 1.21279 * 118.24509 * 182.27040 * 7 6 4 9 9 C 1.50256 * 123.51788 * 2.26007 * 7 6 4 10 10 C 1.53072 * 109.84439 * 342.39836 * 9 7 6 11 11 C 1.52921 * 109.29952 * 59.54886 * 4 2 1 12 12 H 1.08994 * 109.60157 * 290.61601 * 11 4 2 13 13 C 1.50704 * 109.73760 * 51.02042 * 11 4 2 14 14 H 1.08005 * 119.99998 * 4.55167 * 13 11 4 15 15 C 1.37880 * 119.99842 * 184.54655 * 13 11 4 16 16 N 1.31515 * 119.99778 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99753 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46919 * 120.00534 * 17 15 13 20 20 H 1.48501 * 109.47005 * 240.00191 * 17 15 13 21 21 H 1.09003 * 109.47594 * 299.99715 * 1 2 3 22 22 H 1.09000 * 109.47446 * 60.00652 * 1 2 3 23 23 H 1.09003 * 109.47195 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47294 * 239.99830 * 2 1 3 25 25 H 1.09003 * 109.46829 * 185.85001 * 3 2 1 26 26 H 1.08998 * 109.46648 * 305.84805 * 3 2 1 27 27 H 1.08992 * 109.46726 * 65.84655 * 3 2 1 28 28 H 0.97003 * 117.94522 * 40.71965 * 6 4 2 29 29 H 1.09002 * 109.43017 * 222.28460 * 9 7 6 30 30 H 1.08992 * 109.41922 * 102.50784 * 9 7 6 31 31 H 1.08997 * 109.67462 * 289.15442 * 10 9 7 32 32 H 1.08999 * 109.67157 * 168.66413 * 10 9 7 33 33 H 0.97001 * 119.99917 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6755 -0.2048 2.1373 6 7 3.4974 -0.7070 1.2476 7 6 4.2558 -1.7427 1.6089 8 8 5.4602 -1.6004 1.6070 9 6 3.6982 -3.0765 2.0184 10 6 2.2168 -2.9327 2.3759 11 6 1.5188 -2.1589 1.2511 12 1 0.4422 -2.1574 1.4215 13 6 1.8199 -2.8111 -0.0738 14 1 2.3975 -2.2818 -0.8173 15 6 1.3582 -4.0834 -0.3366 16 7 0.6545 -4.7276 0.5687 17 14 1.7321 -4.8920 -1.9784 18 1 2.5348 -3.9646 -2.8155 19 1 2.4995 -6.1428 -1.7508 20 1 0.4596 -5.2116 -2.6739 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1249 1.4443 -0.1047 26 1 1.5936 1.9856 -0.8330 27 1 1.7646 1.9252 0.9376 28 1 3.9437 0.1071 0.9664 29 1 4.2454 -3.4477 2.8849 30 1 3.8050 -3.7822 1.1947 31 1 2.1170 -2.3866 3.3139 32 1 1.7661 -3.9201 2.4767 33 1 0.3294 -5.6225 0.3837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709990257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:47 Heat of formation + Delta-G solvation = -62.767951 kcal Electronic energy + Delta-G solvation = -15071.429839 eV Core-core repulsion = 12709.987907 eV Total energy + Delta-G solvation = -2361.441932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61482 -36.83034 -33.98913 -32.55265 -31.10617 -28.36370 -26.49069 -24.98192 -23.51902 -21.15453 -19.65048 -18.24806 -16.76278 -15.47146 -15.18541 -14.75043 -14.42885 -13.86840 -13.36602 -13.00352 -12.66223 -12.52754 -12.18080 -11.88138 -11.74554 -11.05763 -10.92138 -10.80357 -10.68748 -10.58845 -10.12058 -9.99644 -9.72983 -9.48254 -8.98559 -8.63451 -8.45990 -8.15507 -6.10581 -4.13779 3.24431 3.34285 3.38251 3.57173 4.23200 4.37060 5.22942 5.37710 5.48881 5.51997 5.77867 6.02302 6.07389 6.12921 6.23958 6.26522 6.27775 6.32936 6.41545 6.60431 6.68815 6.97958 7.03714 7.12896 7.15244 7.48415 7.57549 7.68890 7.90563 8.26279 8.28810 8.88077 9.11260 9.50711 10.97161 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.015086 C = 0.011777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.328419 B = 1855.630937 C = 2377.040198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C -0.152 4.152 4 C 0.151 3.849 5 H 0.047 0.953 6 N -0.705 5.705 7 C 0.534 3.466 8 O -0.597 6.597 9 C -0.114 4.114 10 C -0.113 4.113 11 C 0.037 3.963 12 H 0.052 0.948 13 C -0.505 4.505 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.883 3.117 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.042 0.958 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.382 0.618 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 6.704 0.742 6.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.209 4.209 4 C 0.046 3.954 5 H 0.065 0.935 6 N -0.355 5.355 7 C 0.324 3.676 8 O -0.480 6.480 9 C -0.153 4.153 10 C -0.151 4.151 11 C 0.018 3.982 12 H 0.070 0.930 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.217 0.783 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.794 6.386 0.851 6.491 hybrid contribution 0.242 -0.218 -1.090 1.137 sum -0.552 6.168 -0.239 6.197 Atomic orbital electron populations 1.21739 0.94794 1.03222 0.99866 1.21396 0.96364 0.94011 1.00004 1.21951 1.00350 0.97500 1.01137 1.21205 0.78549 1.00032 0.95579 0.93463 1.45571 1.07863 1.15023 1.67023 1.20401 0.85882 0.86528 0.74832 1.90622 1.15874 1.84392 1.57091 1.21408 0.97968 0.93815 1.02138 1.21659 0.93396 1.03419 0.96608 1.19093 0.96645 0.87421 0.95024 0.93043 1.21063 1.33845 0.99848 0.99591 0.92266 1.24900 0.94994 0.97288 0.96419 1.69903 1.36127 1.12914 1.33626 0.86663 0.78077 0.79613 0.84513 1.19831 1.21038 1.21061 0.93911 0.93795 0.90414 0.89362 0.93399 0.93028 0.93213 0.78343 0.91336 0.87879 0.95694 0.89175 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.83 37.15 0.33 -1.87 16 2 C -0.10 -1.66 2.28 -90.62 -0.21 -1.86 16 3 C -0.15 -2.09 8.82 37.16 0.33 -1.76 16 4 C 0.15 2.80 2.36 -68.37 -0.16 2.64 16 5 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 6 N -0.71 -13.62 5.02 -54.82 -0.28 -13.90 16 7 C 0.53 11.74 7.45 -11.83 -0.09 11.65 16 8 O -0.60 -14.63 17.78 5.56 0.10 -14.53 16 9 C -0.11 -2.44 5.51 -28.06 -0.15 -2.59 16 10 C -0.11 -2.42 5.40 -26.52 -0.14 -2.56 16 11 C 0.04 0.80 1.54 -91.63 -0.14 0.66 16 12 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 13 C -0.51 -12.20 5.71 -34.44 -0.20 -12.39 16 14 H 0.06 1.48 6.29 -52.48 -0.33 1.15 16 15 C 0.07 1.66 5.33 -17.82 -0.10 1.57 16 16 N -0.89 -23.22 11.82 55.43 0.65 -22.57 16 17 Si 0.88 20.31 29.54 -169.99 -5.02 15.29 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.43 6.48 -51.93 -0.34 1.09 16 24 H 0.09 1.69 6.22 -51.93 -0.32 1.37 16 25 H 0.05 0.64 6.72 -51.93 -0.35 0.30 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.38 6.75 6.83 -40.82 -0.28 6.47 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.10 2.39 7.43 -51.93 -0.39 2.00 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.09 2.13 6.72 -51.93 -0.35 1.78 16 33 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 257.67 15.07 3.88 3.88 Total: -1.00 -27.19 257.67 -6.00 -33.18 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.81 Total: 5.18 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.53 Total: -6.54 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.38 Total: -36.46 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.19 -6.00 -33.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.585 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds