Wall clock time and date at job start Mon Mar 30 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 C 1.53004 * 109.46697 * 119.99997 * 2 1 3 5 5 H 1.09001 * 109.13138 * 289.86079 * 4 2 1 6 6 N 1.45764 * 109.29763 * 49.34180 * 4 2 1 7 7 C 1.33352 * 124.10626 * 101.26284 * 6 4 2 8 8 O 1.21282 * 118.24569 * 181.91636 * 7 6 4 9 9 C 1.50180 * 123.50626 * 2.19144 * 7 6 4 10 10 C 1.53074 * 109.89177 * 342.42765 * 9 7 6 11 11 C 1.52921 * 109.29955 * 170.37698 * 4 2 1 12 12 H 1.09000 * 109.60156 * 170.68829 * 11 4 2 13 13 C 1.50694 * 109.60433 * 50.19585 * 11 4 2 14 14 H 1.08001 * 119.99587 * 23.49623 * 13 11 4 15 15 C 1.37875 * 120.00424 * 203.49581 * 13 11 4 16 16 N 1.31517 * 119.99468 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00441 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47685 * 89.99671 * 17 15 13 19 19 H 1.48504 * 109.47438 * 210.00223 * 17 15 13 20 20 H 1.48507 * 109.47125 * 329.99572 * 17 15 13 21 21 H 1.08996 * 109.47316 * 300.00341 * 1 2 3 22 22 H 1.09005 * 109.46523 * 60.00202 * 1 2 3 23 23 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47316 * 239.99659 * 2 1 3 25 25 H 1.08996 * 109.46976 * 198.51712 * 3 2 1 26 26 H 1.08995 * 109.47355 * 318.52609 * 3 2 1 27 27 H 1.09008 * 109.46948 * 78.52479 * 3 2 1 28 28 H 0.96993 * 117.94358 * 281.23504 * 6 4 2 29 29 H 1.09000 * 109.39625 * 102.55497 * 9 7 6 30 30 H 1.08999 * 109.39775 * 222.29144 * 9 7 6 31 31 H 1.09003 * 109.68979 * 289.17061 * 10 9 7 32 32 H 1.09004 * 109.67047 * 168.63877 * 10 9 7 33 33 H 0.97008 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.8291 -0.1092 2.1262 6 7 1.3554 -2.0016 1.3795 7 6 1.8903 -3.1738 1.0363 8 8 1.2117 -4.1718 1.1568 9 6 3.2902 -3.3251 0.5140 10 6 3.8165 -1.9701 0.0345 11 6 3.5500 -0.9314 1.1307 12 1 3.9447 -1.2925 2.0804 13 6 4.2145 0.3709 0.7655 14 1 3.7279 1.3078 0.9931 15 6 5.4437 0.3664 0.1410 16 7 6.0364 -0.7746 -0.1357 17 14 6.2677 1.9806 -0.3110 18 1 7.1203 2.4342 0.8172 19 1 7.1083 1.7860 -1.5196 20 1 5.2296 3.0053 -0.5900 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.0799 1.4601 -0.3264 26 1 1.4353 2.0417 -0.6806 27 1 1.9684 1.8531 1.0072 28 1 0.4544 -2.0007 1.7387 29 1 3.9340 -3.7032 1.3082 30 1 3.2921 -4.0294 -0.3180 31 1 3.3008 -1.6786 -0.8805 32 1 4.8881 -2.0383 -0.1536 33 1 6.9011 -0.7778 -0.5754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709990271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:50 Heat of formation + Delta-G solvation = -32.134233 kcal Electronic energy + Delta-G solvation = -15115.059377 eV Core-core repulsion = 12754.945823 eV Total energy + Delta-G solvation = -2360.113554 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.73957 -37.03623 -33.74460 -32.90326 -31.06997 -28.74148 -26.55737 -24.89717 -22.92560 -21.13921 -20.32059 -17.63296 -16.69563 -16.10304 -15.33902 -14.85297 -14.37770 -13.77507 -13.52215 -13.22238 -12.79759 -12.30941 -11.99400 -11.62547 -11.55185 -11.10773 -10.94725 -10.76576 -10.50149 -10.27585 -10.18846 -10.04496 -9.79790 -9.19053 -8.92176 -8.63432 -8.41489 -8.14864 -5.89444 -4.18186 3.20547 3.28960 3.29793 3.39948 4.10061 4.31271 5.10158 5.49119 5.55995 5.63043 5.81734 6.00042 6.16604 6.21133 6.26763 6.36187 6.44279 6.56655 6.60016 6.67561 6.82636 7.01890 7.15981 7.24702 7.41412 7.49880 7.62769 7.83096 7.97879 8.22131 8.61078 8.78301 8.97721 9.47379 10.86237 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.012961 C = 0.009976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.644148 B = 2159.802278 C = 2805.934429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.156 4.156 4 C 0.145 3.855 5 H 0.064 0.936 6 N -0.711 5.711 7 C 0.520 3.480 8 O -0.594 6.594 9 C -0.135 4.135 10 C -0.156 4.156 11 C 0.038 3.962 12 H 0.022 0.978 13 C -0.511 4.511 14 H 0.086 0.914 15 C 0.058 3.942 16 N -0.884 5.884 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.271 1.271 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.383 0.617 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.166 0.834 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 2.697 0.018 5.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.213 4.213 4 C 0.041 3.959 5 H 0.082 0.918 6 N -0.359 5.359 7 C 0.309 3.691 8 O -0.477 6.477 9 C -0.175 4.175 10 C -0.193 4.193 11 C 0.020 3.980 12 H 0.040 0.960 13 C -0.549 4.549 14 H 0.103 0.897 15 C -0.141 4.141 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.196 1.196 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.216 0.784 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.181 0.819 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.414 2.151 -0.096 4.911 hybrid contribution -0.111 0.836 -0.059 0.845 sum -4.526 2.987 -0.155 5.425 Atomic orbital electron populations 1.21943 0.97407 1.00699 1.00707 1.21315 0.93017 0.97420 0.99186 1.22654 1.04889 0.93829 0.99939 1.21398 0.96239 0.81804 0.96490 0.91815 1.45738 1.18455 1.07475 1.64267 1.20704 0.90292 0.82213 0.75892 1.90631 1.63018 1.37049 1.56990 1.21786 0.91571 1.02743 1.01403 1.22865 1.09963 0.89354 0.97132 1.19007 0.87122 0.96195 0.95714 0.95991 1.21668 1.02852 0.93012 1.37372 0.89670 1.24932 0.96997 0.96387 0.95759 1.69133 1.15938 1.23689 1.43692 0.86539 0.79685 0.83458 0.78079 1.20643 1.21162 1.19609 0.93521 0.93465 0.93373 0.90927 0.86848 0.95825 0.93853 0.78375 0.89739 0.90440 0.94420 0.81876 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.69 37.16 0.32 -1.98 16 2 C -0.09 -1.62 2.51 -90.62 -0.23 -1.85 16 3 C -0.16 -2.80 7.52 37.16 0.28 -2.52 16 4 C 0.14 2.77 2.67 -68.37 -0.18 2.58 16 5 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 6 N -0.71 -13.37 4.15 -54.84 -0.23 -13.60 16 7 C 0.52 10.99 7.71 -11.87 -0.09 10.90 16 8 O -0.59 -14.04 17.78 5.56 0.10 -13.94 16 9 C -0.14 -2.78 6.03 -28.10 -0.17 -2.95 16 10 C -0.16 -3.47 4.81 -26.52 -0.13 -3.60 16 11 C 0.04 0.85 2.35 -91.64 -0.22 0.64 16 12 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 13 C -0.51 -11.93 5.94 -34.44 -0.20 -12.13 16 14 H 0.09 1.90 4.50 -52.49 -0.24 1.67 16 15 C 0.06 1.41 5.29 -17.82 -0.09 1.32 16 16 N -0.88 -22.28 9.84 55.43 0.55 -21.73 16 17 Si 0.89 19.12 29.38 -169.99 -4.99 14.12 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 23 H 0.05 0.74 7.07 -51.93 -0.37 0.38 16 24 H 0.07 1.45 6.22 -51.93 -0.32 1.13 16 25 H 0.11 2.31 4.70 -51.93 -0.24 2.07 16 26 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 27 H 0.04 0.74 7.32 -51.92 -0.38 0.36 16 28 H 0.38 6.51 8.13 -40.82 -0.33 6.18 16 29 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.04 0.85 6.24 -51.93 -0.32 0.53 16 32 H 0.17 4.04 4.43 -68.56 -0.30 3.74 16 33 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 249.50 15.07 3.76 3.76 Total: -1.00 -25.85 249.50 -6.11 -31.96 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.58 Total: 9.02 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.71 Total: -9.59 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.32 Total: -35.33 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.10 Total: -13.94 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.99 Total: 14.12 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -25.85 -6.11 -31.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.170 kcal (2) G-P(sol) polarization free energy of solvation -25.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds