Wall clock time and date at job start Mon Mar 30 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 C 1.53004 * 109.46697 * 119.99997 * 2 1 3 5 5 H 1.09001 * 109.13138 * 289.86079 * 4 2 1 6 6 N 1.45764 * 109.29763 * 49.34180 * 4 2 1 7 7 C 1.33352 * 124.10626 * 101.26284 * 6 4 2 8 8 O 1.21282 * 118.24569 * 181.91636 * 7 6 4 9 9 C 1.50180 * 123.50626 * 2.19144 * 7 6 4 10 10 C 1.53074 * 109.89177 * 342.42765 * 9 7 6 11 11 C 1.52921 * 109.29955 * 170.37698 * 4 2 1 12 12 H 1.09000 * 109.60156 * 170.68829 * 11 4 2 13 13 C 1.50694 * 109.60433 * 50.19585 * 11 4 2 14 14 H 1.08001 * 119.99587 * 23.49623 * 13 11 4 15 15 C 1.37875 * 120.00424 * 203.49581 * 13 11 4 16 16 N 1.31517 * 119.99468 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00441 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47685 * 89.99671 * 17 15 13 19 19 H 1.48504 * 109.47438 * 210.00223 * 17 15 13 20 20 H 1.48507 * 109.47125 * 329.99572 * 17 15 13 21 21 H 1.08996 * 109.47316 * 300.00341 * 1 2 3 22 22 H 1.09005 * 109.46523 * 60.00202 * 1 2 3 23 23 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47316 * 239.99659 * 2 1 3 25 25 H 1.08996 * 109.46976 * 198.51712 * 3 2 1 26 26 H 1.08995 * 109.47355 * 318.52609 * 3 2 1 27 27 H 1.09008 * 109.46948 * 78.52479 * 3 2 1 28 28 H 0.96993 * 117.94358 * 281.23504 * 6 4 2 29 29 H 1.09000 * 109.39625 * 102.55497 * 9 7 6 30 30 H 1.08999 * 109.39775 * 222.29144 * 9 7 6 31 31 H 1.09003 * 109.68979 * 289.17061 * 10 9 7 32 32 H 1.09004 * 109.67047 * 168.63877 * 10 9 7 33 33 H 0.97008 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.8291 -0.1092 2.1262 6 7 1.3554 -2.0016 1.3795 7 6 1.8903 -3.1738 1.0363 8 8 1.2117 -4.1718 1.1568 9 6 3.2902 -3.3251 0.5140 10 6 3.8165 -1.9701 0.0345 11 6 3.5500 -0.9314 1.1307 12 1 3.9447 -1.2925 2.0804 13 6 4.2145 0.3709 0.7655 14 1 3.7279 1.3078 0.9931 15 6 5.4437 0.3664 0.1410 16 7 6.0364 -0.7746 -0.1357 17 14 6.2677 1.9806 -0.3110 18 1 7.1203 2.4342 0.8172 19 1 7.1083 1.7860 -1.5196 20 1 5.2296 3.0053 -0.5900 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.0799 1.4601 -0.3264 26 1 1.4353 2.0417 -0.6806 27 1 1.9684 1.8531 1.0072 28 1 0.4544 -2.0007 1.7387 29 1 3.9340 -3.7032 1.3082 30 1 3.2921 -4.0294 -0.3180 31 1 3.3008 -1.6786 -0.8805 32 1 4.8881 -2.0383 -0.1536 33 1 6.9011 -0.7778 -0.5754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709990271.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:50 Heat of formation + Delta-G solvation = -47.275968 kcal Electronic energy + Delta-G solvation = -15115.715972 eV Core-core repulsion = 12754.945823 eV Total energy + Delta-G solvation = -2360.770149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40497 -38.71144 -35.44969 -34.50652 -32.80900 -30.39127 -28.05363 -26.52303 -24.63162 -22.86801 -21.83644 -19.30925 -18.40032 -17.81573 -16.99622 -16.57207 -16.08711 -15.36523 -15.05301 -14.85551 -14.56163 -13.81579 -13.55246 -13.16329 -12.95905 -12.80502 -12.60745 -12.43367 -12.14833 -11.86367 -11.74703 -11.66030 -11.46502 -10.90048 -10.67962 -10.43124 -10.11786 -9.79250 -7.72860 -6.05665 1.50440 1.54793 1.60958 1.70273 2.44699 2.60660 3.25204 3.92222 4.02518 4.21171 4.36354 4.50100 4.53930 4.65575 4.82975 4.89949 5.01113 5.07432 5.16234 5.20399 5.26874 5.45581 5.51273 5.64570 5.72658 5.89999 5.97994 6.05715 6.19890 6.51998 6.77032 6.95740 7.33658 7.61068 9.01418 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.012961 C = 0.009976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.644148 B = 2159.802278 C = 2805.934429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.152 4.152 4 C 0.150 3.850 5 H 0.080 0.920 6 N -0.698 5.698 7 C 0.519 3.481 8 O -0.620 6.620 9 C -0.132 4.132 10 C -0.148 4.148 11 C 0.033 3.967 12 H -0.002 1.002 13 C -0.511 4.511 14 H 0.097 0.903 15 C 0.014 3.986 16 N -0.910 5.910 17 Si 0.947 3.053 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.259 1.259 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.146 0.854 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 3.967 0.201 7.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.209 4.209 4 C 0.046 3.954 5 H 0.098 0.902 6 N -0.345 5.345 7 C 0.308 3.692 8 O -0.504 6.504 9 C -0.171 4.171 10 C -0.186 4.186 11 C 0.014 3.986 12 H 0.016 0.984 13 C -0.549 4.549 14 H 0.115 0.885 15 C -0.183 4.183 16 N -0.552 5.552 17 Si 0.774 3.226 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.183 1.183 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.231 0.769 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.162 0.838 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.727 3.453 0.098 6.688 hybrid contribution 0.295 0.449 -0.104 0.547 sum -5.431 3.902 -0.006 6.687 Atomic orbital electron populations 1.21861 0.94827 1.01027 1.02297 1.21249 0.95125 0.97055 0.97247 1.22498 1.03540 0.93992 1.00868 1.21315 0.94126 0.81988 0.97937 0.90205 1.45589 1.18915 1.06776 1.63254 1.20691 0.90182 0.82472 0.75855 1.90622 1.63522 1.37943 1.58356 1.21729 0.91595 1.01985 1.01826 1.22645 1.08631 0.90396 0.96881 1.19001 0.89421 0.95855 0.94337 0.98363 1.21994 1.02724 0.93833 1.36333 0.88512 1.25568 0.97829 0.98599 0.96274 1.69318 1.16073 1.25111 1.44665 0.85712 0.78840 0.80916 0.77172 1.20980 1.21967 1.18289 0.91685 0.92182 0.93682 0.93300 0.89502 0.93803 0.92929 0.76858 0.89465 0.89525 0.95363 0.83826 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.69 71.98 0.63 -3.27 16 2 C -0.09 -2.95 2.51 -10.79 -0.03 -2.98 16 3 C -0.15 -5.04 7.52 71.98 0.54 -4.50 16 4 C 0.15 5.47 2.67 45.11 0.12 5.59 16 5 H 0.08 2.70 7.91 -2.39 -0.02 2.68 16 6 N -0.70 -24.98 4.15 -446.61 -1.85 -26.83 16 7 C 0.52 21.41 7.71 87.72 0.68 22.09 16 8 O -0.62 -28.60 17.78 -3.04 -0.05 -28.66 16 9 C -0.13 -5.39 6.03 29.71 0.18 -5.21 16 10 C -0.15 -6.64 4.81 30.73 0.15 -6.50 16 11 C 0.03 1.44 2.35 -11.45 -0.03 1.41 16 12 H 0.00 -0.08 8.12 -2.39 -0.02 -0.10 16 13 C -0.51 -23.51 5.94 25.60 0.15 -23.36 16 14 H 0.10 4.16 4.50 -2.91 -0.01 4.15 16 15 C 0.01 0.65 5.29 84.65 0.45 1.10 16 16 N -0.91 -46.54 9.84 21.45 0.21 -46.33 16 17 Si 0.95 38.92 29.38 68.60 2.02 40.94 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 23 H 0.04 1.25 7.07 -2.39 -0.02 1.24 16 24 H 0.05 1.90 6.22 -2.39 -0.01 1.88 16 25 H 0.09 3.38 4.70 -2.39 -0.01 3.37 16 26 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 27 H 0.05 1.63 7.32 -2.38 -0.02 1.62 16 28 H 0.40 12.46 8.13 -92.71 -0.75 11.71 16 29 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.03 1.29 6.24 -2.39 -0.01 1.27 16 32 H 0.15 7.28 4.43 -35.23 -0.16 7.12 16 33 H 0.26 12.78 8.31 -92.70 -0.77 12.01 16 Total: -1.00 -53.81 249.50 3.37 -50.43 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.22 Total: 26.06 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 2.84 Total: -15.61 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.64 Total: -73.16 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.02 Total: 40.94 kcal Total: -53.81 3.37 -50.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990271.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.156 kcal (2) G-P(sol) polarization free energy of solvation -53.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds