Wall clock time and date at job start Mon Mar 30 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47512 * 2 1 4 4 H 1.09001 * 109.60021 * 331.30416 * 3 2 1 5 5 N 1.47189 * 109.60506 * 210.80798 * 3 2 1 6 6 C 1.33370 * 120.42996 * 312.20418 * 5 3 2 7 7 O 1.21280 * 119.89552 * 179.69381 * 6 5 3 8 8 C 1.51426 * 120.21505 * 359.71652 * 6 5 3 9 9 C 1.53060 * 108.49251 * 288.76957 * 8 6 5 10 10 C 1.51785 * 110.74506 * 84.91753 * 9 8 6 11 11 C 1.51775 * 113.80954 * 293.19030 * 10 9 8 12 12 H 1.09007 * 109.15822 * 306.66886 * 11 10 9 13 13 C 1.50701 * 109.19713 * 187.36912 * 11 10 9 14 14 H 1.08004 * 119.99746 * 333.84177 * 13 11 10 15 15 C 1.37879 * 120.00474 * 153.84743 * 13 11 10 16 16 N 1.31517 * 119.99737 * 355.14930 * 15 13 11 17 17 Si 1.86800 * 120.00084 * 175.15445 * 15 13 11 18 18 H 1.48502 * 109.46890 * 60.00009 * 17 15 13 19 19 H 1.48498 * 109.47031 * 299.99852 * 17 15 13 20 20 H 1.48497 * 109.46842 * 179.97438 * 17 15 13 21 21 H 1.09000 * 109.47108 * 59.99979 * 1 2 3 22 22 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46607 * 299.99985 * 1 2 3 24 24 H 1.09001 * 109.46777 * 239.99586 * 2 1 3 25 25 H 1.09000 * 109.46778 * 120.00456 * 2 1 3 26 26 H 0.97006 * 119.78729 * 132.22688 * 5 3 2 27 27 H 1.08992 * 109.63255 * 48.46929 * 8 6 5 28 28 H 1.08997 * 109.63180 * 169.06662 * 8 6 5 29 29 H 1.09003 * 109.22126 * 205.24152 * 9 8 6 30 30 H 1.09001 * 109.22547 * 324.58551 * 9 8 6 31 31 H 1.09003 * 108.61324 * 172.07532 * 10 9 8 32 32 H 1.08992 * 108.62034 * 54.31436 * 10 9 8 33 33 H 0.97001 * 119.99784 * 5.15668 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3128 2.0875 -0.4931 5 7 3.3275 1.5110 -0.7101 6 6 4.2970 0.6367 -0.4372 7 8 5.3520 0.6986 -1.0321 8 6 4.0845 -0.4335 0.6129 9 6 4.0783 0.2328 1.9908 10 6 2.6959 0.7630 2.3254 11 6 2.2499 1.9127 1.4406 12 1 3.0117 2.6922 1.4557 13 6 0.9563 2.4740 1.9720 14 1 0.2916 1.8469 2.5477 15 6 0.6211 3.7881 1.7232 16 7 1.4718 4.5780 1.1051 17 14 -1.0412 4.4465 2.2643 18 1 -1.1693 4.3164 3.7380 19 1 -2.1203 3.6697 1.6030 20 1 -1.1551 5.8770 1.8824 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.4720 2.1968 -1.3809 27 1 3.1294 -0.9298 0.4418 28 1 4.8935 -1.1621 0.5620 29 1 4.3745 -0.4974 2.7439 30 1 4.7898 1.0586 1.9934 31 1 2.6943 1.1008 3.3618 32 1 1.9778 -0.0509 2.2268 33 1 2.3032 4.2185 0.7580 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709990689.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:09 Heat of formation + Delta-G solvation = -39.047959 kcal Electronic energy + Delta-G solvation = -15144.274249 eV Core-core repulsion = 12783.860893 eV Total energy + Delta-G solvation = -2360.413356 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.14794 -37.03861 -33.37076 -33.15866 -31.77263 -29.56753 -25.80232 -24.79221 -22.80342 -22.23709 -19.31506 -18.61316 -17.01405 -16.34156 -16.00567 -14.79651 -14.24705 -13.81173 -13.61437 -13.49637 -12.89501 -12.59504 -12.14506 -11.97362 -11.68110 -11.34234 -10.99704 -10.89658 -10.69362 -10.38560 -10.21062 -10.05269 -9.63781 -9.31395 -9.06686 -8.89939 -8.40266 -8.17381 -6.45569 -4.18480 3.23562 3.36980 3.37607 3.56476 4.01663 4.43623 5.04716 5.21430 5.31600 5.44016 5.49842 5.67228 5.78265 5.94032 6.03345 6.18036 6.19900 6.25748 6.31772 6.41494 6.56287 6.56880 6.78262 6.89737 6.90280 7.29248 7.34956 7.49241 7.95504 8.13542 8.32564 8.75916 8.86301 9.53276 10.92270 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.037436 B = 0.011148 C = 0.010636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.762582 B = 2511.113530 C = 2631.860417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C 0.139 3.861 4 H 0.090 0.910 5 N -0.715 5.715 6 C 0.519 3.481 7 O -0.583 6.583 8 C -0.167 4.167 9 C -0.112 4.112 10 C -0.116 4.116 11 C 0.020 3.980 12 H 0.038 0.962 13 C -0.589 4.589 14 H 0.053 0.947 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 1.063 2.937 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.283 1.283 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.392 0.608 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 -8.225 0.031 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.036 3.964 4 H 0.108 0.892 5 N -0.364 5.364 6 C 0.306 3.694 7 O -0.465 6.465 8 C -0.207 4.207 9 C -0.150 4.150 10 C -0.153 4.153 11 C 0.001 3.999 12 H 0.056 0.944 13 C -0.627 4.627 14 H 0.071 0.929 15 C -0.183 4.183 16 N -0.543 5.543 17 Si 0.891 3.109 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.209 1.209 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.227 0.773 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.936 -6.950 -0.045 7.215 hybrid contribution 0.925 -1.024 -0.353 1.424 sum -1.011 -7.974 -0.398 8.048 Atomic orbital electron populations 1.21784 0.95236 1.00161 1.03267 1.22603 0.96932 0.97432 1.01839 1.22157 0.82295 0.95982 0.96006 0.89155 1.46405 1.16012 1.32506 1.41430 1.20468 0.83048 0.82987 0.82885 1.90657 1.27103 1.75125 1.53575 1.22642 1.05558 0.97488 0.94978 1.21291 0.99617 0.99795 0.94302 1.21361 0.93840 0.99230 1.00842 1.19033 0.98051 0.93548 0.89277 0.94361 1.21824 1.04852 0.98825 1.37222 0.92892 1.25797 1.03614 0.93628 0.95300 1.70809 1.10110 1.37646 1.35782 0.83619 0.74697 0.76366 0.76203 1.21451 1.21297 1.20878 0.93500 0.94061 0.90411 0.93292 0.88745 0.77337 0.86782 0.90017 0.91991 0.92428 0.92493 0.92124 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.65 37.16 0.36 -1.99 16 2 C -0.15 -2.51 3.51 -26.73 -0.09 -2.60 16 3 C 0.14 2.74 2.86 -67.57 -0.19 2.54 16 4 H 0.09 1.96 7.53 -51.93 -0.39 1.57 16 5 N -0.71 -13.81 5.09 -53.45 -0.27 -14.08 16 6 C 0.52 10.28 6.67 -11.25 -0.08 10.21 16 7 O -0.58 -13.37 17.92 5.56 0.10 -13.27 16 8 C -0.17 -2.75 5.51 -27.49 -0.15 -2.90 16 9 C -0.11 -1.88 5.66 -27.32 -0.15 -2.03 16 10 C -0.12 -2.17 4.45 -27.97 -0.12 -2.29 16 11 C 0.02 0.45 1.55 -92.40 -0.14 0.31 16 12 H 0.04 0.97 6.53 -51.92 -0.34 0.63 16 13 C -0.59 -14.44 6.88 -34.44 -0.24 -14.68 16 14 H 0.05 1.29 7.46 -52.48 -0.39 0.90 16 15 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 16 N -0.91 -25.47 13.62 55.43 0.76 -24.72 16 17 Si 1.06 23.36 29.91 -169.99 -5.08 18.27 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.39 6.62 -51.93 -0.34 1.05 16 24 H 0.05 0.77 7.44 -51.93 -0.39 0.38 16 25 H 0.09 1.51 2.74 -51.93 -0.14 1.36 16 26 H 0.39 7.38 8.91 -40.82 -0.36 7.02 16 27 H 0.11 1.71 3.64 -51.93 -0.19 1.52 16 28 H 0.08 1.24 8.13 -51.93 -0.42 0.81 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.06 7.86 -51.93 -0.41 0.65 16 31 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.06 1.06 5.55 -51.93 -0.29 0.77 16 33 H 0.27 7.60 6.64 -40.82 -0.27 7.33 16 LS Contribution 251.60 15.07 3.79 3.79 Total: -1.00 -28.63 251.60 -6.04 -34.67 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.42 Total: 8.31 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.91 Total: -12.98 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.48 Total: -38.79 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.10 Total: -13.27 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.08 Total: 18.27 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.63 -6.04 -34.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990689.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.381 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds