Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 H 1.09005 * 109.73201 * 60.17628 * 3 2 1 5 5 N 1.47186 * 109.60777 * 299.76804 * 3 2 1 6 6 C 1.33373 * 120.42916 * 168.01039 * 5 3 2 7 7 O 1.21283 * 119.89139 * 180.55787 * 6 5 3 8 8 C 1.51423 * 120.21686 * 0.57482 * 6 5 3 9 9 C 1.53065 * 108.48881 * 71.21497 * 8 6 5 10 10 C 1.51795 * 110.74059 * 275.07807 * 9 8 6 11 11 C 1.51779 * 113.80905 * 66.81614 * 10 9 8 12 12 H 1.09002 * 109.19515 * 53.35234 * 11 10 9 13 13 C 1.50700 * 109.19338 * 172.67972 * 11 10 9 14 14 H 1.07998 * 119.99681 * 114.34392 * 13 11 10 15 15 C 1.37869 * 120.00246 * 294.33930 * 13 11 10 16 16 N 1.31520 * 119.99965 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00239 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46775 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47319 * 120.00248 * 17 15 13 20 20 H 1.48502 * 109.46854 * 240.00202 * 17 15 13 21 21 H 1.09001 * 109.47143 * 59.99879 * 1 2 3 22 22 H 1.09007 * 109.46870 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46901 * 299.99289 * 1 2 3 24 24 H 1.09002 * 109.47351 * 240.00225 * 2 1 3 25 25 H 1.08996 * 109.47495 * 120.00762 * 2 1 3 26 26 H 0.97003 * 119.78636 * 348.27960 * 5 3 2 27 27 H 1.08994 * 109.63054 * 190.91367 * 8 6 5 28 28 H 1.09001 * 109.63256 * 311.51293 * 8 6 5 29 29 H 1.08993 * 109.22738 * 35.41204 * 9 8 6 30 30 H 1.09007 * 109.21983 * 154.80492 * 9 8 6 31 31 H 1.09001 * 108.61375 * 187.93237 * 10 9 8 32 32 H 1.08997 * 108.62099 * 305.83294 * 10 9 8 33 33 H 0.96998 * 120.00165 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6816 1.9596 0.8902 5 7 1.5557 2.1376 -1.2036 6 6 1.6679 3.4624 -1.3096 7 8 1.2563 4.0264 -2.3013 8 6 2.3077 4.2646 -0.1961 9 6 3.8111 3.9768 -0.1926 10 6 4.1164 2.7222 0.6055 11 6 3.5748 1.4504 -0.0212 12 1 3.9209 1.3836 -1.0526 13 6 4.0856 0.2612 0.7508 14 1 3.3961 -0.3624 1.3005 15 6 5.4331 -0.0307 0.7554 16 7 6.2727 0.7290 0.0863 17 14 6.0661 -1.5052 1.7118 18 1 4.9279 -2.1913 2.3742 19 1 6.7388 -2.4469 0.7814 20 1 7.0350 -1.0489 2.7405 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.1487 1.6294 -1.9226 27 1 2.1387 5.3277 -0.3669 28 1 1.8764 3.9713 0.7610 29 1 4.1530 3.8416 -1.2186 30 1 4.3371 4.8214 0.2526 31 1 5.1978 2.6279 0.7052 32 1 3.6843 2.8289 1.6004 33 1 7.2208 0.5238 0.0898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709990913.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -60.712045 kcal Electronic energy + Delta-G solvation = -14840.764191 eV Core-core repulsion = 12479.411410 eV Total energy + Delta-G solvation = -2361.352781 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61159 -36.68046 -34.00655 -32.89178 -31.39431 -29.52576 -26.17733 -24.81831 -22.83771 -20.89350 -19.52266 -18.94166 -16.83153 -16.27367 -15.47239 -14.86853 -14.12085 -13.86617 -13.39029 -13.26947 -12.80886 -12.68153 -12.31045 -12.00473 -11.50688 -11.09855 -11.08314 -10.81303 -10.68304 -10.57761 -10.24861 -9.84227 -9.70268 -9.59030 -9.14917 -8.77635 -8.43929 -8.15126 -6.09166 -4.15799 3.23357 3.28206 3.32785 3.34205 4.01015 4.36549 5.15560 5.22319 5.42827 5.55110 5.64711 5.67574 5.78760 5.95841 6.13089 6.19734 6.28914 6.32093 6.50908 6.54480 6.69302 6.76928 6.90675 7.08727 7.29938 7.43339 7.62158 7.78092 7.96284 8.04781 8.31782 8.85628 8.90168 9.49740 10.97791 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.032451 B = 0.011550 C = 0.009174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.619245 B = 2423.684978 C = 3051.253670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C 0.141 3.859 4 H 0.066 0.934 5 N -0.712 5.712 6 C 0.520 3.480 7 O -0.582 6.582 8 C -0.136 4.136 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.038 3.962 12 H 0.038 0.962 13 C -0.517 4.517 14 H 0.068 0.932 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.390 0.610 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 0.813 2.318 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.084 0.916 5 N -0.362 5.362 6 C 0.307 3.693 7 O -0.464 6.464 8 C -0.176 4.176 9 C -0.148 4.148 10 C -0.152 4.152 11 C 0.018 3.982 12 H 0.056 0.944 13 C -0.556 4.556 14 H 0.085 0.915 15 C -0.139 4.139 16 N -0.525 5.525 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.226 0.774 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.393 1.217 1.952 6.794 hybrid contribution 0.412 -1.024 0.272 1.136 sum -5.981 0.193 2.224 6.384 Atomic orbital electron populations 1.21899 0.97576 1.00756 1.01106 1.21816 0.93119 0.96366 1.04496 1.21771 0.97527 0.91728 0.85154 0.91568 1.46302 1.60879 1.07181 1.21823 1.20523 0.77635 0.82949 0.88193 1.90660 1.51550 1.70869 1.33296 1.21990 0.98301 0.99639 0.97691 1.21315 0.91964 0.99779 1.01760 1.21274 1.04679 0.92525 0.96694 1.18975 0.87368 0.93658 0.98165 0.94401 1.21360 0.92518 1.10752 1.30924 0.91455 1.24989 0.97151 0.96428 0.95374 1.69928 1.03023 1.38094 1.41419 0.86590 0.79006 0.82886 0.79838 1.19718 1.21130 1.21099 0.93501 0.93263 0.93257 0.91515 0.88762 0.77439 0.89944 0.89854 0.92406 0.92487 0.89272 0.94723 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.75 37.16 0.36 -1.78 16 2 C -0.12 -2.01 4.69 -26.73 -0.13 -2.13 16 3 C 0.14 2.59 2.18 -67.30 -0.15 2.44 16 4 H 0.07 1.17 6.71 -51.93 -0.35 0.82 16 5 N -0.71 -12.85 4.62 -53.20 -0.25 -13.10 16 6 C 0.52 10.13 7.06 -11.25 -0.08 10.05 16 7 O -0.58 -13.09 17.92 5.55 0.10 -12.99 16 8 C -0.14 -2.33 5.57 -27.49 -0.15 -2.48 16 9 C -0.11 -2.06 5.67 -27.31 -0.15 -2.22 16 10 C -0.11 -2.44 4.49 -27.96 -0.13 -2.56 16 11 C 0.04 0.84 1.73 -92.13 -0.16 0.68 16 12 H 0.04 0.98 8.04 -51.93 -0.42 0.56 16 13 C -0.52 -12.57 7.66 -34.44 -0.26 -12.83 16 14 H 0.07 1.57 5.30 -52.49 -0.28 1.29 16 15 C 0.06 1.60 5.26 -17.82 -0.09 1.51 16 16 N -0.89 -24.01 11.69 55.43 0.65 -23.36 16 17 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H 0.05 0.63 7.14 -51.93 -0.37 0.26 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.09 1.66 5.72 -51.93 -0.30 1.36 16 26 H 0.39 6.64 7.88 -40.82 -0.32 6.32 16 27 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.08 1.30 6.76 -51.93 -0.35 0.95 16 29 H 0.06 1.18 7.86 -51.93 -0.41 0.78 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.09 2.19 6.25 -51.93 -0.32 1.87 16 32 H 0.03 0.70 7.88 -51.93 -0.41 0.29 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 LS Contribution 257.68 15.07 3.88 3.88 Total: -1.00 -27.81 257.68 -6.35 -34.16 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.77 Total: 5.79 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.94 Total: -9.32 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.40 Total: -36.46 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.10 Total: -12.99 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.81 -6.35 -34.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990913.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.554 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds