Wall clock time and date at job start Mon Mar 30 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 C 1.52997 * 109.46646 * 174.99857 * 4 2 1 6 6 H 1.08997 * 110.22128 * 53.07155 * 5 4 2 7 7 N 1.46765 * 110.24599 * 291.04329 * 5 4 2 8 8 C 1.34415 * 111.30365 * 258.01590 * 7 5 4 9 9 O 1.21283 * 124.94184 * 179.55527 * 8 7 5 10 10 C 1.51279 * 110.11706 * 359.59670 * 8 7 5 11 11 C 1.54481 * 110.24494 * 174.99907 * 5 4 2 12 12 H 1.09001 * 110.96739 * 335.46855 * 11 5 4 13 13 C 1.50697 * 110.97446 * 211.70252 * 11 5 4 14 14 H 1.08006 * 119.99479 * 359.97438 * 13 11 5 15 15 C 1.37875 * 120.00295 * 180.02562 * 13 11 5 16 16 N 1.31513 * 119.99928 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00064 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47300 * 119.99723 * 17 15 13 20 20 H 1.48498 * 109.47340 * 240.00055 * 17 15 13 21 21 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 22 22 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 23 23 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 25 25 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 28 28 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 29 29 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 30 30 H 0.97002 * 124.34764 * 78.01924 * 7 5 4 31 31 H 1.08996 * 110.49098 * 225.06515 * 10 8 7 32 32 H 1.09001 * 110.48622 * 102.42089 * 10 8 7 33 33 H 0.97000 * 119.99971 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1880 6 1 4.0066 0.1507 1.0187 7 7 3.9646 -1.7603 0.1247 8 6 4.3130 -2.9572 0.6276 9 8 4.6760 -3.9085 -0.0314 10 6 4.1854 -2.9454 2.1349 11 6 4.1095 -1.4440 2.4972 12 1 3.4185 -1.2765 3.3234 13 6 5.4762 -0.8976 2.8207 14 1 5.9379 -0.1747 2.1644 15 6 6.1376 -1.3213 3.9539 16 7 5.5759 -2.2026 4.7522 17 14 7.8320 -0.6445 4.3544 18 1 8.2389 0.3241 3.3049 19 1 7.7930 0.0399 5.6718 20 1 8.8113 -1.7596 4.4047 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.7515 -0.1583 2.1370 29 1 1.6052 -1.7198 1.2952 30 1 3.9761 -1.5391 -0.8197 31 1 5.0597 -3.4052 2.5955 32 1 3.2753 -3.4590 2.4448 33 1 6.0411 -2.5004 5.5496 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709991412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:19 Heat of formation + Delta-G solvation = -85.421338 kcal Electronic energy + Delta-G solvation = -14488.878276 eV Core-core repulsion = 12126.454020 eV Total energy + Delta-G solvation = -2362.424256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25878 -38.24481 -36.26207 -34.67892 -31.72699 -29.81543 -27.94787 -27.69787 -24.84798 -21.66407 -21.54816 -20.49420 -18.70058 -17.92025 -16.65427 -16.47347 -15.96027 -15.57432 -14.94152 -14.60615 -14.36640 -14.22336 -13.56103 -13.17823 -13.02901 -12.84867 -12.83782 -12.64126 -12.39553 -12.24562 -11.96444 -11.60260 -11.42913 -11.01357 -10.99960 -10.84789 -10.42244 -9.84276 -8.15164 -6.25636 1.40994 1.45114 1.53888 1.75083 2.42719 2.66345 3.17100 3.78225 3.97087 4.11106 4.14736 4.33862 4.61621 4.63207 4.77502 4.85279 4.88548 4.93004 5.00738 5.12168 5.19602 5.25569 5.36604 5.48496 5.57709 5.59582 5.69248 5.81624 6.12899 6.18661 6.27539 6.82973 7.42200 7.48150 8.93000 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.030912 B = 0.009827 C = 0.008497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.590080 B = 2848.579419 C = 3294.537327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.117 4.117 5 C 0.139 3.861 6 H 0.089 0.911 7 N -0.704 5.704 8 C 0.523 3.477 9 O -0.604 6.604 10 C -0.137 4.137 11 C 0.045 3.955 12 H 0.042 0.958 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.017 3.983 16 N -0.913 5.913 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.289 1.289 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.408 0.592 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 7.192 -6.519 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.156 4.156 5 C 0.035 3.965 6 H 0.107 0.893 7 N -0.357 5.357 8 C 0.312 3.688 9 O -0.487 6.487 10 C -0.178 4.178 11 C 0.026 3.974 12 H 0.060 0.940 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.183 4.183 16 N -0.552 5.552 17 Si 0.774 3.226 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.215 1.215 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.247 0.753 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.091 6.624 -6.559 12.343 hybrid contribution 1.107 -0.007 0.191 1.124 sum -6.984 6.617 -6.367 11.537 Atomic orbital electron populations 1.21799 0.94322 1.01615 1.02254 1.21089 0.96416 0.96482 0.97266 1.21890 1.00968 0.95441 1.02206 1.22027 0.93642 1.00694 0.99208 1.21959 0.94704 0.92925 0.86916 0.89275 1.46121 1.66457 1.13077 1.10043 1.21339 0.73753 0.81961 0.91742 1.90586 1.51174 1.39020 1.67966 1.22271 1.02267 1.02498 0.90724 1.19652 0.95989 0.89313 0.92433 0.93985 1.21430 1.02517 1.24834 1.07762 0.92370 1.25675 1.01087 0.95253 0.96252 1.70043 1.39254 1.31723 1.14132 0.85652 0.80394 0.78210 0.78313 1.19057 1.20247 1.21496 0.92328 0.91745 0.93185 0.91749 0.92382 0.93071 0.91714 0.90435 0.92665 0.75320 0.91232 0.90151 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.19 71.98 0.66 -2.07 16 2 C -0.09 -2.11 2.88 -10.79 -0.03 -2.15 16 3 C -0.15 -3.05 8.97 71.98 0.65 -2.41 16 4 C -0.12 -3.33 4.29 30.60 0.13 -3.20 16 5 C 0.14 4.88 2.89 45.44 0.13 5.01 16 6 H 0.09 3.04 5.96 -2.39 -0.01 3.02 16 7 N -0.70 -25.42 5.52 -439.44 -2.42 -27.84 16 8 C 0.52 23.55 8.43 87.90 0.74 24.29 16 9 O -0.60 -30.85 18.03 -3.04 -0.05 -30.91 16 10 C -0.14 -6.42 6.08 30.59 0.19 -6.24 16 11 C 0.05 2.04 2.49 -10.48 -0.03 2.01 16 12 H 0.04 2.01 7.86 -2.39 -0.02 1.99 16 13 C -0.53 -26.98 8.48 25.60 0.22 -26.76 16 14 H 0.06 2.93 7.63 -2.91 -0.02 2.91 16 15 C 0.02 0.91 5.15 84.65 0.44 1.35 16 16 N -0.91 -50.67 12.39 21.45 0.27 -50.40 16 17 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.46 7.61 -2.39 -0.02 1.45 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.15 6.44 -2.39 -0.02 1.13 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 2.16 8.09 -2.39 -0.02 2.15 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.41 12.44 8.74 -92.71 -0.81 11.63 16 31 H 0.07 3.78 7.01 -2.39 -0.02 3.76 16 32 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.26 13.96 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -60.95 270.29 3.19 -57.77 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.28 Total: 17.15 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 3.09 Total: -10.16 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.16 Total: -78.24 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -60.95 3.19 -57.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709991412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.655 kcal (2) G-P(sol) polarization free energy of solvation -60.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds