Wall clock time and date at job start Mon Mar 30 2020 02:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47146 * 2 1 4 4 C 1.52991 * 109.47380 * 120.00539 * 2 1 3 5 5 C 1.53001 * 109.47402 * 66.58103 * 4 2 1 6 6 H 1.08995 * 110.21987 * 298.84979 * 5 4 2 7 7 N 1.46759 * 110.24946 * 176.82086 * 5 4 2 8 8 C 1.34419 * 111.30541 * 223.98696 * 7 5 4 9 9 O 1.21284 * 124.94779 * 180.43570 * 8 7 5 10 10 C 1.51384 * 110.12033 * 0.40237 * 8 7 5 11 11 C 1.54486 * 110.24250 * 60.77408 * 5 4 2 12 12 H 1.09001 * 110.97024 * 262.57044 * 11 5 4 13 13 C 1.50699 * 110.97019 * 26.29927 * 11 5 4 14 14 H 1.08004 * 119.99831 * 354.72267 * 13 11 5 15 15 C 1.37872 * 120.00127 * 175.00691 * 13 11 5 16 16 N 1.31517 * 119.99937 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00179 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47175 * 59.99321 * 17 15 13 19 19 H 1.48500 * 109.47138 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46598 * 299.99309 * 17 15 13 21 21 H 1.08998 * 109.47220 * 294.56599 * 1 2 3 22 22 H 1.09001 * 109.47299 * 54.57282 * 1 2 3 23 23 H 1.09004 * 109.46877 * 174.56638 * 1 2 3 24 24 H 1.09006 * 109.47251 * 240.00418 * 2 1 3 25 25 H 1.09000 * 109.47009 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47369 * 300.00360 * 3 2 1 27 27 H 1.09006 * 109.46704 * 60.00083 * 3 2 1 28 28 H 1.09004 * 109.47079 * 306.58359 * 4 2 1 29 29 H 1.08999 * 109.47720 * 186.58303 * 4 2 1 30 30 H 0.97004 * 124.35251 * 43.96157 * 7 5 4 31 31 H 1.08997 * 110.49804 * 257.59949 * 10 8 7 32 32 H 1.09000 * 110.51910 * 134.92424 * 10 8 7 33 33 H 0.97004 * 120.00304 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6695 -2.2036 1.1691 6 1 0.5865 -2.3196 1.1283 7 7 2.2164 -2.9269 2.3231 8 6 2.7721 -4.0927 1.9502 9 8 3.2900 -4.8883 2.7050 10 6 2.6568 -4.2686 0.4511 11 6 2.3236 -2.8519 -0.0713 12 1 1.6211 -2.8982 -0.9034 13 6 3.5768 -2.1147 -0.4675 14 1 3.8541 -1.2060 0.0464 15 6 4.3663 -2.5969 -1.4897 16 7 4.0260 -3.7005 -2.1188 17 14 5.9201 -1.6834 -1.9804 18 1 6.8414 -1.6137 -0.8178 19 1 6.5856 -2.4024 -3.0964 20 1 5.5688 -0.3081 -2.4167 21 1 -0.3633 0.4272 0.9346 22 1 -0.3634 0.5957 -0.8374 23 1 -0.3633 -1.0231 -0.0973 24 1 1.8934 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.5837 -0.2801 2.1352 29 1 3.1236 -0.6205 1.3100 30 1 2.1818 -2.6049 3.2374 31 1 1.8525 -4.9633 0.2091 32 1 3.6015 -4.6168 0.0334 33 1 4.5816 -4.0401 -2.8378 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709991413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:22 Heat of formation + Delta-G solvation = -58.034222 kcal Electronic energy + Delta-G solvation = -14811.392954 eV Core-core repulsion = 12450.156293 eV Total energy + Delta-G solvation = -2361.236662 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.50388 -36.76290 -34.49751 -32.85527 -29.77895 -28.57108 -26.78327 -25.20126 -23.36095 -20.51325 -19.45451 -18.79288 -16.76404 -16.29034 -14.87701 -14.67694 -14.24530 -13.91247 -13.44532 -12.84349 -12.76966 -12.49463 -12.09409 -11.84090 -11.62109 -11.31491 -10.90482 -10.83703 -10.69843 -10.41854 -10.31777 -10.04261 -9.93224 -9.38517 -8.94854 -8.87638 -8.41502 -8.15600 -6.11027 -4.15667 3.27823 3.33598 3.35946 3.59990 4.27781 4.36722 5.21048 5.39938 5.47889 5.50303 5.73450 5.84219 5.98242 6.06701 6.15541 6.23532 6.27046 6.38470 6.46150 6.55728 6.66021 6.67083 6.78392 7.00202 7.21395 7.39758 7.63275 7.75130 7.85347 7.92841 8.25934 8.84882 9.21057 9.49878 10.97074 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.016975 C = 0.010482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.639457 B = 1649.094171 C = 2670.706163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.107 4.107 5 C 0.130 3.870 6 H 0.056 0.944 7 N -0.729 5.729 8 C 0.524 3.476 9 O -0.572 6.572 10 C -0.142 4.142 11 C 0.051 3.949 12 H 0.049 0.951 13 C -0.516 4.516 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.275 1.275 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.391 0.609 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 7.020 2.506 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.199 4.199 4 C -0.145 4.145 5 C 0.026 3.974 6 H 0.074 0.926 7 N -0.382 5.382 8 C 0.314 3.686 9 O -0.453 6.453 10 C -0.183 4.183 11 C 0.033 3.967 12 H 0.067 0.933 13 C -0.554 4.554 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.227 0.773 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.461 6.434 2.601 8.831 hybrid contribution 0.844 0.634 0.096 1.060 sum -4.618 7.068 2.697 8.863 Atomic orbital electron populations 1.21881 0.96640 1.01335 1.00364 1.21185 0.94307 0.95429 1.00798 1.21787 1.01094 0.96699 1.00290 1.21806 1.02409 0.93963 0.96344 1.21934 0.96035 0.92067 0.87412 0.92568 1.46365 1.60116 1.22080 1.09657 1.21543 0.74740 0.80049 0.92306 1.90604 1.46475 1.47622 1.60582 1.22433 1.04742 1.01247 0.89831 1.19668 0.96349 0.89896 0.90823 0.93295 1.21234 1.07012 1.09823 1.17301 0.90988 1.24979 0.97706 0.94906 0.96177 1.69928 1.38531 1.20812 1.23101 0.86714 0.83588 0.79952 0.78188 1.20304 1.21325 1.20082 0.93862 0.93478 0.92678 0.87545 0.92815 0.93416 0.93937 0.94334 0.90110 0.77286 0.91382 0.87004 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.86 37.16 0.33 -1.66 16 2 C -0.10 -1.57 2.43 -90.62 -0.22 -1.79 16 3 C -0.14 -2.02 9.19 37.16 0.34 -1.68 16 4 C -0.11 -1.79 3.98 -26.73 -0.11 -1.90 16 5 C 0.13 2.39 3.28 -67.01 -0.22 2.17 16 6 H 0.06 0.95 6.85 -51.93 -0.36 0.60 16 7 N -0.73 -13.93 5.88 -52.73 -0.31 -14.24 16 8 C 0.52 12.00 8.44 -10.81 -0.09 11.91 16 9 O -0.57 -14.76 18.03 5.55 0.10 -14.66 16 10 C -0.14 -3.29 6.03 -26.69 -0.16 -3.46 16 11 C 0.05 1.14 2.23 -90.14 -0.20 0.94 16 12 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.52 -12.48 6.55 -34.44 -0.23 -12.70 16 14 H 0.07 1.70 4.88 -52.48 -0.26 1.45 16 15 C 0.06 1.66 5.13 -17.82 -0.09 1.57 16 16 N -0.89 -23.78 11.95 55.43 0.66 -23.11 16 17 Si 0.89 20.28 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.77 6.92 -51.93 -0.36 0.41 16 24 H 0.11 2.01 5.93 -51.93 -0.31 1.71 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.52 5.94 -51.93 -0.31 1.21 16 30 H 0.39 6.51 8.96 -40.82 -0.37 6.14 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.11 2.95 6.57 -51.93 -0.34 2.61 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -27.80 262.31 -6.07 -33.87 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.81 Total: 5.53 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.65 Total: -6.60 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.35 Total: -37.36 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.80 -6.07 -33.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709991413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.159 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds