Wall clock time and date at job start Mon Mar 30 2020 02:18:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53002 * 109.47146 * 2 1
4 4 C 1.52991 * 109.47380 * 120.00539 * 2 1 3
5 5 C 1.53001 * 109.47402 * 66.58103 * 4 2 1
6 6 H 1.08995 * 110.21987 * 298.84979 * 5 4 2
7 7 N 1.46759 * 110.24946 * 176.82086 * 5 4 2
8 8 C 1.34419 * 111.30541 * 223.98696 * 7 5 4
9 9 O 1.21284 * 124.94779 * 180.43570 * 8 7 5
10 10 C 1.51384 * 110.12033 * 0.40237 * 8 7 5
11 11 C 1.54486 * 110.24250 * 60.77408 * 5 4 2
12 12 H 1.09001 * 110.97024 * 262.57044 * 11 5 4
13 13 C 1.50699 * 110.97019 * 26.29927 * 11 5 4
14 14 H 1.08004 * 119.99831 * 354.72267 * 13 11 5
15 15 C 1.37872 * 120.00127 * 175.00691 * 13 11 5
16 16 N 1.31517 * 119.99937 * 359.97438 * 15 13 11
17 17 Si 1.86805 * 120.00179 * 180.02562 * 15 13 11
18 18 H 1.48498 * 109.47175 * 59.99321 * 17 15 13
19 19 H 1.48500 * 109.47138 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.46598 * 299.99309 * 17 15 13
21 21 H 1.08998 * 109.47220 * 294.56599 * 1 2 3
22 22 H 1.09001 * 109.47299 * 54.57282 * 1 2 3
23 23 H 1.09004 * 109.46877 * 174.56638 * 1 2 3
24 24 H 1.09006 * 109.47251 * 240.00418 * 2 1 3
25 25 H 1.09000 * 109.47009 * 180.02562 * 3 2 1
26 26 H 1.08997 * 109.47369 * 300.00360 * 3 2 1
27 27 H 1.09006 * 109.46704 * 60.00083 * 3 2 1
28 28 H 1.09004 * 109.47079 * 306.58359 * 4 2 1
29 29 H 1.08999 * 109.47720 * 186.58303 * 4 2 1
30 30 H 0.97004 * 124.35251 * 43.96157 * 7 5 4
31 31 H 1.08997 * 110.49804 * 257.59949 * 10 8 7
32 32 H 1.09000 * 110.51910 * 134.92424 * 10 8 7
33 33 H 0.97004 * 120.00304 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 6 1.6695 -2.2036 1.1691
6 1 0.5865 -2.3196 1.1283
7 7 2.2164 -2.9269 2.3231
8 6 2.7721 -4.0927 1.9502
9 8 3.2900 -4.8883 2.7050
10 6 2.6568 -4.2686 0.4511
11 6 2.3236 -2.8519 -0.0713
12 1 1.6211 -2.8982 -0.9034
13 6 3.5768 -2.1147 -0.4675
14 1 3.8541 -1.2060 0.0464
15 6 4.3663 -2.5969 -1.4897
16 7 4.0260 -3.7005 -2.1188
17 14 5.9201 -1.6834 -1.9804
18 1 6.8414 -1.6137 -0.8178
19 1 6.5856 -2.4024 -3.0964
20 1 5.5688 -0.3081 -2.4167
21 1 -0.3633 0.4272 0.9346
22 1 -0.3634 0.5957 -0.8374
23 1 -0.3633 -1.0231 -0.0973
24 1 1.8934 -0.5138 -0.8901
25 1 3.1300 1.4425 -0.0005
26 1 1.6766 1.9564 -0.8899
27 1 1.6766 1.9563 0.8901
28 1 1.5837 -0.2801 2.1352
29 1 3.1236 -0.6205 1.3100
30 1 2.1818 -2.6049 3.2374
31 1 1.8525 -4.9633 0.2091
32 1 3.6015 -4.6168 0.0334
33 1 4.5816 -4.0401 -2.8378
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709991413.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:18:22
Heat of formation + Delta-G solvation = -58.034222 kcal
Electronic energy + Delta-G solvation = -14811.392954 eV
Core-core repulsion = 12450.156293 eV
Total energy + Delta-G solvation = -2361.236662 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 211.131 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.50388 -36.76290 -34.49751 -32.85527 -29.77895 -28.57108 -26.78327 -25.20126
-23.36095 -20.51325 -19.45451 -18.79288 -16.76404 -16.29034 -14.87701 -14.67694
-14.24530 -13.91247 -13.44532 -12.84349 -12.76966 -12.49463 -12.09409 -11.84090
-11.62109 -11.31491 -10.90482 -10.83703 -10.69843 -10.41854 -10.31777 -10.04261
-9.93224 -9.38517 -8.94854 -8.87638 -8.41502 -8.15600 -6.11027 -4.15667
3.27823 3.33598 3.35946 3.59990 4.27781 4.36722 5.21048 5.39938
5.47889 5.50303 5.73450 5.84219 5.98242 6.06701 6.15541 6.23532
6.27046 6.38470 6.46150 6.55728 6.66021 6.67083 6.78392 7.00202
7.21395 7.39758 7.63275 7.75130 7.85347 7.92841 8.25934 8.84882
9.21057 9.49878 10.97074
Molecular weight = 211.13amu
Principal moments of inertia in cm(-1)
A = 0.018906 B = 0.016975 C = 0.010482
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1480.639457 B = 1649.094171 C = 2670.706163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.098 4.098
3 C -0.141 4.141
4 C -0.107 4.107
5 C 0.130 3.870
6 H 0.056 0.944
7 N -0.729 5.729
8 C 0.524 3.476
9 O -0.572 6.572
10 C -0.142 4.142
11 C 0.051 3.949
12 H 0.049 0.951
13 C -0.516 4.516
14 H 0.072 0.928
15 C 0.065 3.935
16 N -0.886 5.886
17 Si 0.888 3.112
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.275 1.275
21 H 0.042 0.958
22 H 0.046 0.954
23 H 0.054 0.946
24 H 0.106 0.894
25 H 0.053 0.947
26 H 0.047 0.953
27 H 0.042 0.958
28 H 0.038 0.962
29 H 0.081 0.919
30 H 0.391 0.609
31 H 0.068 0.932
32 H 0.112 0.888
33 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.786 7.020 2.506 9.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.117 4.117
3 C -0.199 4.199
4 C -0.145 4.145
5 C 0.026 3.974
6 H 0.074 0.926
7 N -0.382 5.382
8 C 0.314 3.686
9 O -0.453 6.453
10 C -0.183 4.183
11 C 0.033 3.967
12 H 0.067 0.933
13 C -0.554 4.554
14 H 0.090 0.910
15 C -0.138 4.138
16 N -0.524 5.524
17 Si 0.716 3.284
18 H -0.203 1.203
19 H -0.213 1.213
20 H -0.201 1.201
21 H 0.061 0.939
22 H 0.065 0.935
23 H 0.073 0.927
24 H 0.125 0.875
25 H 0.072 0.928
26 H 0.066 0.934
27 H 0.061 0.939
28 H 0.057 0.943
29 H 0.099 0.901
30 H 0.227 0.773
31 H 0.086 0.914
32 H 0.130 0.870
33 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -5.461 6.434 2.601 8.831
hybrid contribution 0.844 0.634 0.096 1.060
sum -4.618 7.068 2.697 8.863
Atomic orbital electron populations
1.21881 0.96640 1.01335 1.00364 1.21185 0.94307 0.95429 1.00798
1.21787 1.01094 0.96699 1.00290 1.21806 1.02409 0.93963 0.96344
1.21934 0.96035 0.92067 0.87412 0.92568 1.46365 1.60116 1.22080
1.09657 1.21543 0.74740 0.80049 0.92306 1.90604 1.46475 1.47622
1.60582 1.22433 1.04742 1.01247 0.89831 1.19668 0.96349 0.89896
0.90823 0.93295 1.21234 1.07012 1.09823 1.17301 0.90988 1.24979
0.97706 0.94906 0.96177 1.69928 1.38531 1.20812 1.23101 0.86714
0.83588 0.79952 0.78188 1.20304 1.21325 1.20082 0.93862 0.93478
0.92678 0.87545 0.92815 0.93416 0.93937 0.94334 0.90110 0.77286
0.91382 0.87004 0.92733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.99 8.86 37.16 0.33 -1.66 16
2 C -0.10 -1.57 2.43 -90.62 -0.22 -1.79 16
3 C -0.14 -2.02 9.19 37.16 0.34 -1.68 16
4 C -0.11 -1.79 3.98 -26.73 -0.11 -1.90 16
5 C 0.13 2.39 3.28 -67.01 -0.22 2.17 16
6 H 0.06 0.95 6.85 -51.93 -0.36 0.60 16
7 N -0.73 -13.93 5.88 -52.73 -0.31 -14.24 16
8 C 0.52 12.00 8.44 -10.81 -0.09 11.91 16
9 O -0.57 -14.76 18.03 5.55 0.10 -14.66 16
10 C -0.14 -3.29 6.03 -26.69 -0.16 -3.46 16
11 C 0.05 1.14 2.23 -90.14 -0.20 0.94 16
12 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16
13 C -0.52 -12.48 6.55 -34.44 -0.23 -12.70 16
14 H 0.07 1.70 4.88 -52.48 -0.26 1.45 16
15 C 0.06 1.66 5.13 -17.82 -0.09 1.57 16
16 N -0.89 -23.78 11.95 55.43 0.66 -23.11 16
17 Si 0.89 20.28 29.54 -169.99 -5.02 15.25 16
18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
23 H 0.05 0.77 6.92 -51.93 -0.36 0.41 16
24 H 0.11 2.01 5.93 -51.93 -0.31 1.71 16
25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16
29 H 0.08 1.52 5.94 -51.93 -0.31 1.21 16
30 H 0.39 6.51 8.96 -40.82 -0.37 6.14 16
31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16
32 H 0.11 2.95 6.57 -51.93 -0.34 2.61 16
33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16
LS Contribution 262.31 15.07 3.95 3.95
Total: -1.00 -27.80 262.31 -6.07 -33.87
By element:
Atomic # 1 Polarization: 10.34 SS G_CDS: -4.81 Total: 5.53 kcal
Atomic # 6 Polarization: -5.95 SS G_CDS: -0.65 Total: -6.60 kcal
Atomic # 7 Polarization: -37.71 SS G_CDS: 0.35 Total: -37.36 kcal
Atomic # 8 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal
Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -27.80 -6.07 -33.87 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709991413.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.159 kcal
(2) G-P(sol) polarization free energy of solvation -27.803 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds