Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46942 * 2 1 4 4 C 1.52999 * 109.46780 * 119.99731 * 2 1 3 5 5 C 1.52994 * 109.46948 * 65.00200 * 4 2 1 6 6 H 1.08997 * 110.28836 * 302.41043 * 5 4 2 7 7 N 1.46767 * 110.04340 * 64.43600 * 5 4 2 8 8 C 1.34413 * 111.30452 * 102.29021 * 7 5 4 9 9 O 1.21284 * 124.94398 * 180.27189 * 8 7 5 10 10 C 1.51284 * 110.11800 * 0.02562 * 8 7 5 11 11 C 1.54485 * 110.24554 * 180.43476 * 5 4 2 12 12 H 1.09001 * 110.96889 * 148.30055 * 11 5 4 13 13 C 1.50699 * 110.96899 * 24.53329 * 11 5 4 14 14 H 1.07997 * 119.99721 * 7.93640 * 13 11 5 15 15 C 1.37876 * 119.99967 * 187.93730 * 13 11 5 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99994 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46958 * 59.99716 * 17 15 13 19 19 H 1.48493 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46909 * 299.99959 * 17 15 13 21 21 H 1.08995 * 109.47263 * 300.00386 * 1 2 3 22 22 H 1.09004 * 109.46840 * 59.99953 * 1 2 3 23 23 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46909 * 239.99957 * 2 1 3 25 25 H 1.09003 * 109.46841 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46907 * 299.99850 * 3 2 1 27 27 H 1.08995 * 109.47457 * 59.99733 * 3 2 1 28 28 H 1.08995 * 109.47007 * 304.99804 * 4 2 1 29 29 H 1.09005 * 109.46819 * 184.99889 * 4 2 1 30 30 H 0.97003 * 124.34446 * 282.13958 * 7 5 4 31 31 H 1.08998 * 110.48621 * 135.16860 * 10 8 7 32 32 H 1.08995 * 110.48493 * 257.81884 * 10 8 7 33 33 H 0.96996 * 120.00455 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 0.5527 -2.2867 1.0987 7 7 2.2990 -2.8526 0.0560 8 6 3.3454 -3.5905 0.4649 9 8 4.0698 -4.2332 -0.2653 10 6 3.4918 -3.4980 1.9678 11 6 2.1322 -2.9390 2.4475 12 1 1.4520 -3.7468 2.7175 13 6 2.3174 -1.9849 3.5993 14 1 1.9859 -0.9609 3.5107 15 6 2.9100 -2.4193 4.7659 16 7 3.3142 -3.6662 4.8735 17 14 3.1389 -1.2369 6.1938 18 1 1.8145 -0.7278 6.6320 19 1 3.7959 -1.9444 7.3219 20 1 3.9888 -0.0982 5.7621 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6053 -0.2616 2.1369 29 1 3.1263 -0.6443 1.2952 30 1 2.0172 -2.7673 -0.8683 31 1 3.6710 -4.4846 2.3950 32 1 4.2991 -2.8148 2.2310 33 1 3.7314 -3.9717 5.6941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709991414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = -60.606590 kcal Electronic energy + Delta-G solvation = -14623.875767 eV Core-core repulsion = 12262.527558 eV Total energy + Delta-G solvation = -2361.348208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59276 -36.71631 -34.70675 -32.88350 -29.96131 -28.38738 -26.92645 -25.31899 -23.64067 -20.21605 -19.85206 -18.89417 -16.66640 -16.11443 -15.12187 -14.62313 -14.40824 -14.06323 -13.68932 -12.94833 -12.91117 -12.35812 -12.20995 -12.02479 -11.73188 -11.31337 -11.03891 -10.89193 -10.82961 -10.60642 -10.41265 -10.19031 -9.76899 -9.36887 -9.33317 -8.76087 -8.43356 -8.22652 -6.12961 -4.18077 3.26404 3.32682 3.33699 3.51195 4.21056 4.36469 5.14513 5.21904 5.25626 5.28721 5.69162 5.77474 5.82232 5.92548 6.02541 6.13190 6.14745 6.26787 6.35740 6.44351 6.57533 6.67344 6.78161 6.84144 7.03005 7.41935 7.56620 7.72757 7.81114 7.85929 8.22862 8.82425 9.13130 9.48086 10.96748 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.012635 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.292473 B = 2215.589975 C = 3089.252927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.144 4.144 4 C -0.111 4.111 5 C 0.131 3.869 6 H 0.069 0.931 7 N -0.732 5.732 8 C 0.511 3.489 9 O -0.572 6.572 10 C -0.126 4.126 11 C 0.050 3.950 12 H 0.041 0.959 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.055 0.945 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.391 0.609 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 6.922 -5.720 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.149 4.149 5 C 0.026 3.974 6 H 0.087 0.913 7 N -0.385 5.385 8 C 0.300 3.700 9 O -0.452 6.452 10 C -0.166 4.166 11 C 0.031 3.969 12 H 0.059 0.941 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.224 6.444 -5.822 9.657 hybrid contribution 0.033 0.650 0.424 0.777 sum -4.191 7.094 -5.397 9.850 Atomic orbital electron populations 1.21879 0.95826 1.01620 1.01049 1.21225 0.95416 0.95975 0.99574 1.21807 1.00875 0.96432 1.01002 1.22042 1.01605 0.94651 0.96601 1.21899 0.95741 0.92576 0.87144 0.91309 1.46484 1.32579 1.49844 1.09590 1.21896 0.78715 0.76386 0.93011 1.90611 1.47593 1.44318 1.62670 1.22336 1.02300 1.04045 0.87925 1.19654 0.91795 0.95115 0.90363 0.94094 1.21140 1.40464 0.96914 0.97442 0.91027 1.24996 0.95221 0.95056 0.98468 1.69949 1.39809 1.15152 1.27345 0.86652 0.78424 0.81030 0.81901 1.20188 1.21348 1.20171 0.92615 0.93688 0.92597 0.92145 0.92944 0.93579 0.92747 0.89508 0.91670 0.77292 0.89103 0.89143 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.96 37.16 0.33 -1.47 16 2 C -0.10 -1.42 2.86 -90.62 -0.26 -1.68 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 4 C -0.11 -1.87 3.43 -26.73 -0.09 -1.96 16 5 C 0.13 2.39 3.23 -67.01 -0.22 2.17 16 6 H 0.07 1.16 6.51 -51.93 -0.34 0.82 16 7 N -0.73 -13.33 5.37 -52.76 -0.28 -13.61 16 8 C 0.51 11.27 8.43 -10.86 -0.09 11.18 16 9 O -0.57 -14.22 18.03 5.55 0.10 -14.12 16 10 C -0.13 -2.92 5.36 -26.74 -0.14 -3.06 16 11 C 0.05 1.12 3.02 -90.14 -0.27 0.85 16 12 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 13 C -0.52 -12.64 7.80 -34.44 -0.27 -12.91 16 14 H 0.07 1.65 5.23 -52.49 -0.27 1.38 16 15 C 0.07 1.68 5.33 -17.82 -0.09 1.58 16 16 N -0.89 -23.90 12.27 55.43 0.68 -23.22 16 17 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.69 6.53 -51.93 -0.34 0.35 16 24 H 0.06 0.84 7.36 -51.93 -0.38 0.46 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.53 5.91 -51.93 -0.31 1.23 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.39 6.16 8.59 -40.82 -0.35 5.81 16 31 H 0.09 2.27 7.93 -51.93 -0.41 1.86 16 32 H 0.09 2.20 7.89 -51.93 -0.41 1.79 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -27.64 265.40 -6.20 -33.83 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.91 Total: 5.02 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.76 Total: -6.79 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.40 Total: -36.83 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.10 Total: -14.12 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.64 -6.20 -33.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709991414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.772 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds