Wall clock time and date at job start Mon Mar 30 2020 03:04:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52990 * 109.47167 * 2 1
4 4 H 1.09008 * 109.47214 * 176.59795 * 3 2 1
5 5 C 1.50702 * 109.47450 * 56.60099 * 3 2 1
6 6 H 1.07993 * 120.00029 * 243.97790 * 5 3 2
7 7 C 1.37889 * 119.99876 * 63.97199 * 5 3 2
8 8 N 1.31512 * 119.99723 * 11.14751 * 7 5 3
9 9 Si 1.86792 * 119.99899 * 191.14224 * 7 5 3
10 10 H 1.48503 * 109.47084 * 179.97438 * 9 7 5
11 11 H 1.48504 * 109.47174 * 60.00252 * 9 7 5
12 12 H 1.48495 * 109.47585 * 300.00229 * 9 7 5
13 13 N 1.46893 * 109.47572 * 296.60023 * 3 2 1
14 14 C 1.46902 * 110.99990 * 277.35250 * 13 3 2
15 15 C 1.53005 * 119.80861 * 103.37762 * 14 13 3
16 16 C 1.53002 * 60.65384 * 112.31271 * 15 14 13
17 17 H 1.09002 * 120.24781 * 247.86625 * 16 15 14
18 18 C 1.54482 * 118.06917 * 90.40552 * 16 15 14
19 19 O 1.44424 * 104.80059 * 321.13216 * 18 16 15
20 20 C 1.44995 * 104.98290 * 319.03869 * 19 18 16
21 21 H 1.09001 * 109.46531 * 301.52787 * 1 2 3
22 22 H 1.08998 * 109.46979 * 61.52339 * 1 2 3
23 23 H 1.09001 * 109.46990 * 181.52517 * 1 2 3
24 24 H 1.08994 * 109.47026 * 239.99608 * 2 1 3
25 25 H 1.09007 * 109.46861 * 120.00283 * 2 1 3
26 26 H 0.97001 * 120.00284 * 359.07013 * 8 7 5
27 27 H 1.00902 * 110.99941 * 41.29967 * 13 3 2
28 28 H 1.09004 * 117.43050 * 219.98739 * 15 14 13
29 29 H 1.08999 * 117.43141 * 4.63747 * 15 14 13
30 30 H 1.08998 * 110.36758 * 79.95857 * 18 16 15
31 31 H 1.08998 * 110.37273 * 202.18851 * 18 16 15
32 32 H 1.08997 * 111.17938 * 282.18506 * 20 19 18
33 33 H 1.09004 * 109.83299 * 159.67592 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 3.1284 1.4430 0.0610
5 6 1.4702 2.1768 1.1862
6 1 0.8044 3.0134 1.0343
7 6 1.7987 1.7804 2.4653
8 7 2.7695 0.9140 2.6563
9 14 0.8650 2.4741 3.9269
10 1 1.4064 1.8926 5.1814
11 1 -0.5744 2.1301 3.8033
12 1 1.0201 3.9506 3.9579
13 7 1.6187 2.1108 -1.2383
14 6 2.5344 1.7977 -2.3434
15 6 2.1185 0.7849 -3.4122
16 6 2.2685 2.2589 -3.7940
17 1 1.3927 2.8470 -4.0680
18 6 3.6479 2.7438 -4.2925
19 8 4.6051 2.0446 -3.4675
20 6 4.0400 2.0718 -2.1325
21 1 -0.3632 0.5374 0.8760
22 1 -0.3633 0.4900 -0.9033
23 1 -0.3633 -1.0273 0.0274
24 1 1.8934 -0.5139 -0.8899
25 1 1.8934 -0.5139 0.8900
26 1 3.2455 0.5436 1.8966
27 1 0.6688 1.8669 -1.4757
28 1 2.8802 0.0930 -3.7718
29 1 1.1076 0.3813 -3.3552
30 1 3.7866 2.4802 -5.3410
31 1 3.7431 3.8212 -4.1570
32 1 4.1865 3.0443 -1.6626
33 1 4.4876 1.2849 -1.5253
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000718066824.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:31
Heat of formation + Delta-G solvation = -18.344440 kcal
Electronic energy + Delta-G solvation = -14694.976219 eV
Core-core repulsion = 12335.460635 eV
Total energy + Delta-G solvation = -2359.515584 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 211.131 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.09831 -36.46152 -34.13296 -31.74217 -30.04525 -27.77505 -25.67042 -25.39144
-23.59775 -20.48995 -20.12429 -18.98061 -16.76737 -16.41656 -15.59145 -14.82433
-14.54592 -13.78338 -13.56496 -13.30086 -13.05786 -12.56216 -12.38864 -12.15033
-11.36652 -11.23658 -11.10981 -10.85374 -10.77506 -10.26028 -10.11906 -10.00260
-9.96850 -9.69716 -9.41575 -8.63416 -8.20382 -7.32961 -6.35278 -4.02376
3.44501 3.44996 3.64090 3.82855 4.09277 4.50057 4.72757 4.87138
4.97136 5.21900 5.35649 5.46971 5.67455 5.75930 5.89537 5.95976
6.05623 6.09094 6.13957 6.16545 6.26515 6.30543 6.66524 6.79174
6.95925 7.06501 7.19785 7.25865 7.83604 8.17437 8.35409 8.60197
8.88200 9.64908 11.01698
Molecular weight = 211.13amu
Principal moments of inertia in cm(-1)
A = 0.044751 B = 0.008968 C = 0.008398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 625.528814 B = 3121.293933 C = 3333.173350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.151 4.151
3 C 0.206 3.794
4 H 0.030 0.970
5 C -0.579 4.579
6 H 0.055 0.945
7 C 0.021 3.979
8 N -0.911 5.911
9 Si 1.065 2.935
10 H -0.284 1.284
11 H -0.289 1.289
12 H -0.289 1.289
13 N -0.628 5.628
14 C 0.029 3.971
15 C -0.174 4.174
16 C -0.214 4.214
17 H 0.117 0.883
18 C 0.077 3.923
19 O -0.379 6.379
20 C 0.089 3.911
21 H 0.071 0.929
22 H 0.032 0.968
23 H 0.028 0.972
24 H 0.025 0.975
25 H 0.066 0.934
26 H 0.268 0.732
27 H 0.334 0.666
28 H 0.090 0.910
29 H 0.096 0.904
30 H 0.087 0.913
31 H 0.066 0.934
32 H 0.080 0.920
33 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.444 0.730 -9.982 10.113
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.190 4.190
3 C 0.098 3.902
4 H 0.048 0.952
5 C -0.617 4.617
6 H 0.074 0.926
7 C -0.183 4.183
8 N -0.547 5.547
9 Si 0.894 3.106
10 H -0.209 1.209
11 H -0.215 1.215
12 H -0.215 1.215
13 N -0.257 5.257
14 C -0.065 4.065
15 C -0.214 4.214
16 C -0.233 4.233
17 H 0.135 0.865
18 C 0.000 4.000
19 O -0.297 6.297
20 C 0.012 3.988
21 H 0.090 0.910
22 H 0.051 0.949
23 H 0.047 0.953
24 H 0.043 0.957
25 H 0.085 0.915
26 H 0.080 0.920
27 H 0.154 0.846
28 H 0.109 0.891
29 H 0.115 0.885
30 H 0.105 0.895
31 H 0.084 0.916
32 H 0.098 0.902
33 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -1.013 1.226 -8.182 8.335
hybrid contribution -0.550 -0.801 -1.915 2.147
sum -1.563 0.425 -10.096 10.225
Atomic orbital electron populations
1.21584 0.96894 0.98874 1.01478 1.22219 0.95997 1.01123 0.99705
1.19364 0.95709 0.88480 0.86606 0.95241 1.21780 1.31794 1.17249
0.90900 0.92645 1.25702 0.96198 0.96207 1.00226 1.70819 1.19244
1.29822 1.34815 0.83594 0.75535 0.75760 0.75759 1.20940 1.21514
1.21506 1.60524 1.03581 1.60314 1.01298 1.23296 0.94692 1.00789
0.87732 1.23398 1.02306 0.91487 1.04177 1.24153 0.99440 0.98272
1.01444 0.86470 1.22781 0.85743 0.96182 0.95312 1.89240 1.43624
1.77237 1.19588 1.22823 0.89250 1.02495 0.84187 0.91044 0.94932
0.95252 0.95660 0.91510 0.92040 0.84586 0.89137 0.88540 0.89458
0.91613 0.90230 0.88877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.66 9.39 37.16 0.35 -2.31 16
2 C -0.15 -3.36 5.47 -26.73 -0.15 -3.51 16
3 C 0.21 4.91 1.89 -68.87 -0.13 4.78 16
4 H 0.03 0.77 5.73 -51.92 -0.30 0.47 16
5 C -0.58 -15.48 7.32 -34.43 -0.25 -15.73 16
6 H 0.06 1.52 7.84 -52.49 -0.41 1.11 16
7 C 0.02 0.57 5.19 -17.82 -0.09 0.48 16
8 N -0.91 -26.38 13.02 55.43 0.72 -25.66 16
9 Si 1.06 24.67 29.92 -169.99 -5.09 19.59 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16
12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
13 N -0.63 -13.08 6.55 -92.68 -0.61 -13.69 16
14 C 0.03 0.52 2.75 -130.03 -0.36 0.16 16
15 C -0.17 -2.75 9.51 -26.73 -0.25 -3.00 16
16 C -0.21 -3.24 7.25 -89.05 -0.65 -3.88 16
17 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16
18 C 0.08 1.08 7.52 37.93 0.29 1.37 16
19 O -0.38 -6.45 11.34 -35.23 -0.40 -6.85 16
20 C 0.09 1.63 6.37 37.93 0.24 1.87 16
21 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16
22 H 0.03 0.59 6.45 -51.93 -0.33 0.26 16
23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
24 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16
25 H 0.07 1.65 6.45 -51.92 -0.34 1.32 16
26 H 0.27 7.74 6.09 -40.82 -0.25 7.49 16
27 H 0.33 6.67 6.50 -39.29 -0.26 6.41 16
28 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16
29 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16
30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16
33 H 0.09 1.74 7.57 -51.93 -0.39 1.34 16
LS Contribution 263.11 15.07 3.97 3.97
Total: -1.00 -28.32 263.11 -7.20 -35.52
By element:
Atomic # 1 Polarization: 11.70 SS G_CDS: -4.79 Total: 6.90 kcal
Atomic # 6 Polarization: -18.78 SS G_CDS: -1.00 Total: -19.78 kcal
Atomic # 7 Polarization: -39.46 SS G_CDS: 0.11 Total: -39.35 kcal
Atomic # 8 Polarization: -6.45 SS G_CDS: -0.40 Total: -6.85 kcal
Atomic # 14 Polarization: 24.67 SS G_CDS: -5.09 Total: 19.59 kcal
Total LS contribution 3.97 Total: 3.97 kcal
Total: -28.32 -7.20 -35.52 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000718066824.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.178 kcal
(2) G-P(sol) polarization free energy of solvation -28.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds