Wall clock time and date at job start Mon Mar 30 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.47167 * 2 1 4 4 H 1.09008 * 109.47214 * 176.59795 * 3 2 1 5 5 C 1.50702 * 109.47450 * 56.60099 * 3 2 1 6 6 H 1.07993 * 120.00029 * 243.97790 * 5 3 2 7 7 C 1.37889 * 119.99876 * 63.97199 * 5 3 2 8 8 N 1.31512 * 119.99723 * 11.14751 * 7 5 3 9 9 Si 1.86792 * 119.99899 * 191.14224 * 7 5 3 10 10 H 1.48503 * 109.47084 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47174 * 60.00252 * 9 7 5 12 12 H 1.48495 * 109.47585 * 300.00229 * 9 7 5 13 13 N 1.46893 * 109.47572 * 296.60023 * 3 2 1 14 14 C 1.46902 * 110.99990 * 277.35250 * 13 3 2 15 15 C 1.53005 * 119.80861 * 103.37762 * 14 13 3 16 16 C 1.53002 * 60.65384 * 112.31271 * 15 14 13 17 17 H 1.09002 * 120.24781 * 247.86625 * 16 15 14 18 18 C 1.54482 * 118.06917 * 90.40552 * 16 15 14 19 19 O 1.44424 * 104.80059 * 321.13216 * 18 16 15 20 20 C 1.44995 * 104.98290 * 319.03869 * 19 18 16 21 21 H 1.09001 * 109.46531 * 301.52787 * 1 2 3 22 22 H 1.08998 * 109.46979 * 61.52339 * 1 2 3 23 23 H 1.09001 * 109.46990 * 181.52517 * 1 2 3 24 24 H 1.08994 * 109.47026 * 239.99608 * 2 1 3 25 25 H 1.09007 * 109.46861 * 120.00283 * 2 1 3 26 26 H 0.97001 * 120.00284 * 359.07013 * 8 7 5 27 27 H 1.00902 * 110.99941 * 41.29967 * 13 3 2 28 28 H 1.09004 * 117.43050 * 219.98739 * 15 14 13 29 29 H 1.08999 * 117.43141 * 4.63747 * 15 14 13 30 30 H 1.08998 * 110.36758 * 79.95857 * 18 16 15 31 31 H 1.08998 * 110.37273 * 202.18851 * 18 16 15 32 32 H 1.08997 * 111.17938 * 282.18506 * 20 19 18 33 33 H 1.09004 * 109.83299 * 159.67592 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1284 1.4430 0.0610 5 6 1.4702 2.1768 1.1862 6 1 0.8044 3.0134 1.0343 7 6 1.7987 1.7804 2.4653 8 7 2.7695 0.9140 2.6563 9 14 0.8650 2.4741 3.9269 10 1 1.4064 1.8926 5.1814 11 1 -0.5744 2.1301 3.8033 12 1 1.0201 3.9506 3.9579 13 7 1.6187 2.1108 -1.2383 14 6 2.5344 1.7977 -2.3434 15 6 2.1185 0.7849 -3.4122 16 6 2.2685 2.2589 -3.7940 17 1 1.3927 2.8470 -4.0680 18 6 3.6479 2.7438 -4.2925 19 8 4.6051 2.0446 -3.4675 20 6 4.0400 2.0718 -2.1325 21 1 -0.3632 0.5374 0.8760 22 1 -0.3633 0.4900 -0.9033 23 1 -0.3633 -1.0273 0.0274 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 3.2455 0.5436 1.8966 27 1 0.6688 1.8669 -1.4757 28 1 2.8802 0.0930 -3.7718 29 1 1.1076 0.3813 -3.3552 30 1 3.7866 2.4802 -5.3410 31 1 3.7431 3.8212 -4.1570 32 1 4.1865 3.0443 -1.6626 33 1 4.4876 1.2849 -1.5253 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718066824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:31 Heat of formation + Delta-G solvation = -18.344440 kcal Electronic energy + Delta-G solvation = -14694.976219 eV Core-core repulsion = 12335.460635 eV Total energy + Delta-G solvation = -2359.515584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09831 -36.46152 -34.13296 -31.74217 -30.04525 -27.77505 -25.67042 -25.39144 -23.59775 -20.48995 -20.12429 -18.98061 -16.76737 -16.41656 -15.59145 -14.82433 -14.54592 -13.78338 -13.56496 -13.30086 -13.05786 -12.56216 -12.38864 -12.15033 -11.36652 -11.23658 -11.10981 -10.85374 -10.77506 -10.26028 -10.11906 -10.00260 -9.96850 -9.69716 -9.41575 -8.63416 -8.20382 -7.32961 -6.35278 -4.02376 3.44501 3.44996 3.64090 3.82855 4.09277 4.50057 4.72757 4.87138 4.97136 5.21900 5.35649 5.46971 5.67455 5.75930 5.89537 5.95976 6.05623 6.09094 6.13957 6.16545 6.26515 6.30543 6.66524 6.79174 6.95925 7.06501 7.19785 7.25865 7.83604 8.17437 8.35409 8.60197 8.88200 9.64908 11.01698 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.008968 C = 0.008398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.528814 B = 3121.293933 C = 3333.173350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 C 0.206 3.794 4 H 0.030 0.970 5 C -0.579 4.579 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.628 5.628 14 C 0.029 3.971 15 C -0.174 4.174 16 C -0.214 4.214 17 H 0.117 0.883 18 C 0.077 3.923 19 O -0.379 6.379 20 C 0.089 3.911 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.028 0.972 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.268 0.732 27 H 0.334 0.666 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 0.730 -9.982 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.190 4.190 3 C 0.098 3.902 4 H 0.048 0.952 5 C -0.617 4.617 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.214 4.214 16 C -0.233 4.233 17 H 0.135 0.865 18 C 0.000 4.000 19 O -0.297 6.297 20 C 0.012 3.988 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.013 1.226 -8.182 8.335 hybrid contribution -0.550 -0.801 -1.915 2.147 sum -1.563 0.425 -10.096 10.225 Atomic orbital electron populations 1.21584 0.96894 0.98874 1.01478 1.22219 0.95997 1.01123 0.99705 1.19364 0.95709 0.88480 0.86606 0.95241 1.21780 1.31794 1.17249 0.90900 0.92645 1.25702 0.96198 0.96207 1.00226 1.70819 1.19244 1.29822 1.34815 0.83594 0.75535 0.75760 0.75759 1.20940 1.21514 1.21506 1.60524 1.03581 1.60314 1.01298 1.23296 0.94692 1.00789 0.87732 1.23398 1.02306 0.91487 1.04177 1.24153 0.99440 0.98272 1.01444 0.86470 1.22781 0.85743 0.96182 0.95312 1.89240 1.43624 1.77237 1.19588 1.22823 0.89250 1.02495 0.84187 0.91044 0.94932 0.95252 0.95660 0.91510 0.92040 0.84586 0.89137 0.88540 0.89458 0.91613 0.90230 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.39 37.16 0.35 -2.31 16 2 C -0.15 -3.36 5.47 -26.73 -0.15 -3.51 16 3 C 0.21 4.91 1.89 -68.87 -0.13 4.78 16 4 H 0.03 0.77 5.73 -51.92 -0.30 0.47 16 5 C -0.58 -15.48 7.32 -34.43 -0.25 -15.73 16 6 H 0.06 1.52 7.84 -52.49 -0.41 1.11 16 7 C 0.02 0.57 5.19 -17.82 -0.09 0.48 16 8 N -0.91 -26.38 13.02 55.43 0.72 -25.66 16 9 Si 1.06 24.67 29.92 -169.99 -5.09 19.59 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.63 -13.08 6.55 -92.68 -0.61 -13.69 16 14 C 0.03 0.52 2.75 -130.03 -0.36 0.16 16 15 C -0.17 -2.75 9.51 -26.73 -0.25 -3.00 16 16 C -0.21 -3.24 7.25 -89.05 -0.65 -3.88 16 17 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 18 C 0.08 1.08 7.52 37.93 0.29 1.37 16 19 O -0.38 -6.45 11.34 -35.23 -0.40 -6.85 16 20 C 0.09 1.63 6.37 37.93 0.24 1.87 16 21 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 22 H 0.03 0.59 6.45 -51.93 -0.33 0.26 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16 25 H 0.07 1.65 6.45 -51.92 -0.34 1.32 16 26 H 0.27 7.74 6.09 -40.82 -0.25 7.49 16 27 H 0.33 6.67 6.50 -39.29 -0.26 6.41 16 28 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.09 1.74 7.57 -51.93 -0.39 1.34 16 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -28.32 263.11 -7.20 -35.52 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.79 Total: 6.90 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.00 Total: -19.78 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.11 Total: -39.35 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.40 Total: -6.85 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.09 Total: 19.59 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.32 -7.20 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718066824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.178 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds