Wall clock time and date at job start Mon Mar 30 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.47167 * 2 1 4 4 H 1.09008 * 109.47214 * 176.59795 * 3 2 1 5 5 C 1.50702 * 109.47450 * 56.60099 * 3 2 1 6 6 H 1.07993 * 120.00029 * 243.97790 * 5 3 2 7 7 C 1.37889 * 119.99876 * 63.97199 * 5 3 2 8 8 N 1.31512 * 119.99723 * 11.14751 * 7 5 3 9 9 Si 1.86792 * 119.99899 * 191.14224 * 7 5 3 10 10 H 1.48503 * 109.47084 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47174 * 60.00252 * 9 7 5 12 12 H 1.48495 * 109.47585 * 300.00229 * 9 7 5 13 13 N 1.46893 * 109.47572 * 296.60023 * 3 2 1 14 14 C 1.46902 * 110.99990 * 277.35250 * 13 3 2 15 15 C 1.53005 * 119.80861 * 103.37762 * 14 13 3 16 16 C 1.53002 * 60.65384 * 112.31271 * 15 14 13 17 17 H 1.09002 * 120.24781 * 247.86625 * 16 15 14 18 18 C 1.54482 * 118.06917 * 90.40552 * 16 15 14 19 19 O 1.44424 * 104.80059 * 321.13216 * 18 16 15 20 20 C 1.44995 * 104.98290 * 319.03869 * 19 18 16 21 21 H 1.09001 * 109.46531 * 301.52787 * 1 2 3 22 22 H 1.08998 * 109.46979 * 61.52339 * 1 2 3 23 23 H 1.09001 * 109.46990 * 181.52517 * 1 2 3 24 24 H 1.08994 * 109.47026 * 239.99608 * 2 1 3 25 25 H 1.09007 * 109.46861 * 120.00283 * 2 1 3 26 26 H 0.97001 * 120.00284 * 359.07013 * 8 7 5 27 27 H 1.00902 * 110.99941 * 41.29967 * 13 3 2 28 28 H 1.09004 * 117.43050 * 219.98739 * 15 14 13 29 29 H 1.08999 * 117.43141 * 4.63747 * 15 14 13 30 30 H 1.08998 * 110.36758 * 79.95857 * 18 16 15 31 31 H 1.08998 * 110.37273 * 202.18851 * 18 16 15 32 32 H 1.08997 * 111.17938 * 282.18506 * 20 19 18 33 33 H 1.09004 * 109.83299 * 159.67592 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1284 1.4430 0.0610 5 6 1.4702 2.1768 1.1862 6 1 0.8044 3.0134 1.0343 7 6 1.7987 1.7804 2.4653 8 7 2.7695 0.9140 2.6563 9 14 0.8650 2.4741 3.9269 10 1 1.4064 1.8926 5.1814 11 1 -0.5744 2.1301 3.8033 12 1 1.0201 3.9506 3.9579 13 7 1.6187 2.1108 -1.2383 14 6 2.5344 1.7977 -2.3434 15 6 2.1185 0.7849 -3.4122 16 6 2.2685 2.2589 -3.7940 17 1 1.3927 2.8470 -4.0680 18 6 3.6479 2.7438 -4.2925 19 8 4.6051 2.0446 -3.4675 20 6 4.0400 2.0718 -2.1325 21 1 -0.3632 0.5374 0.8760 22 1 -0.3633 0.4900 -0.9033 23 1 -0.3633 -1.0273 0.0274 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 3.2455 0.5436 1.8966 27 1 0.6688 1.8669 -1.4757 28 1 2.8802 0.0930 -3.7718 29 1 1.1076 0.3813 -3.3552 30 1 3.7866 2.4802 -5.3410 31 1 3.7431 3.8212 -4.1570 32 1 4.1865 3.0443 -1.6626 33 1 4.4876 1.2849 -1.5253 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718066824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:31 Heat of formation + Delta-G solvation = -37.320747 kcal Electronic energy + Delta-G solvation = -14695.799094 eV Core-core repulsion = 12335.460635 eV Total energy + Delta-G solvation = -2360.338458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43669 -38.18376 -35.64198 -33.64811 -31.64619 -29.14599 -27.47220 -26.81971 -25.48315 -21.97091 -21.60708 -20.52686 -18.72125 -17.83591 -16.95071 -16.19333 -16.01589 -15.63639 -15.35589 -15.05586 -14.61670 -14.05432 -13.80261 -13.64860 -13.14625 -12.82273 -12.60186 -12.40969 -12.34988 -12.07278 -11.93484 -11.72049 -11.57128 -11.09546 -10.90067 -10.48203 -10.23962 -8.92090 -8.52317 -6.19561 1.56133 1.62422 1.81476 2.50891 2.60469 2.80257 3.25116 3.28382 3.59302 3.64262 3.94335 4.18104 4.34136 4.35017 4.42495 4.53212 4.59776 4.64674 4.69079 4.77208 4.83014 4.93645 5.05109 5.16347 5.21252 5.38819 5.53109 5.62351 5.96844 6.20329 6.53940 6.68458 6.77682 7.55115 8.84777 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.008968 C = 0.008398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.528814 B = 3121.293933 C = 3333.173350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 C 0.211 3.789 4 H 0.001 0.999 5 C -0.582 4.582 6 H 0.045 0.955 7 C -0.025 4.025 8 N -0.936 5.936 9 Si 1.106 2.894 10 H -0.289 1.289 11 H -0.271 1.271 12 H -0.277 1.277 13 N -0.633 5.633 14 C -0.010 4.010 15 C -0.162 4.162 16 C -0.185 4.185 17 H 0.136 0.864 18 C 0.070 3.930 19 O -0.388 6.388 20 C 0.094 3.906 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.257 0.743 27 H 0.340 0.660 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 1.071 -11.648 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.181 4.181 3 C 0.103 3.897 4 H 0.019 0.981 5 C -0.620 4.620 6 H 0.063 0.937 7 C -0.224 4.224 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.215 1.215 11 H -0.196 1.196 12 H -0.202 1.202 13 N -0.263 5.263 14 C -0.103 4.103 15 C -0.202 4.202 16 C -0.204 4.204 17 H 0.154 0.846 18 C -0.006 4.006 19 O -0.306 6.306 20 C 0.016 3.984 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.160 0.840 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.305 1.575 -9.888 10.274 hybrid contribution -0.114 -0.884 -1.515 1.758 sum -2.419 0.691 -11.403 11.677 Atomic orbital electron populations 1.21496 0.95014 1.00197 1.01391 1.22064 0.97549 0.99741 0.98776 1.19105 0.93800 0.89339 0.87466 0.98129 1.22043 1.30972 1.16841 0.92168 0.93654 1.26925 0.96253 0.96054 1.03137 1.70925 1.20664 1.31477 1.34340 0.83057 0.75374 0.75791 0.72835 1.21458 1.19591 1.20235 1.60366 1.04278 1.60381 1.01254 1.23297 0.93946 1.04608 0.88438 1.23428 1.02854 0.91950 1.01933 1.24324 1.00610 0.97842 0.97641 0.84634 1.23097 0.84434 0.96739 0.96333 1.89231 1.44535 1.77792 1.19068 1.22597 0.89847 1.01123 0.84805 0.93401 0.92781 0.93098 0.94270 0.94619 0.93260 0.84033 0.88935 0.87355 0.86343 0.90390 0.91653 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.39 71.98 0.68 -4.16 16 2 C -0.14 -6.32 5.47 30.59 0.17 -6.15 16 3 C 0.21 10.21 1.89 44.17 0.08 10.30 16 4 H 0.00 0.05 5.73 -2.38 -0.01 0.03 16 5 C -0.58 -31.48 7.32 25.60 0.19 -31.30 16 6 H 0.05 2.50 7.84 -2.91 -0.02 2.48 16 7 C -0.03 -1.39 5.19 84.66 0.44 -0.95 16 8 N -0.94 -55.69 13.02 21.45 0.28 -55.41 16 9 Si 1.11 49.75 29.92 68.60 2.05 51.80 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.63 -25.92 6.55 -447.13 -2.93 -28.85 16 14 C -0.01 -0.34 2.75 4.55 0.01 -0.33 16 15 C -0.16 -4.67 9.51 30.60 0.29 -4.38 16 16 C -0.19 -5.00 7.25 -9.77 -0.07 -5.07 16 17 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 18 C 0.07 1.76 7.52 72.49 0.55 2.30 16 19 O -0.39 -12.67 11.34 -148.98 -1.69 -14.36 16 20 C 0.09 3.43 6.37 72.48 0.46 3.89 16 21 H 0.05 2.09 7.06 -2.39 -0.02 2.07 16 22 H 0.05 1.86 6.45 -2.39 -0.02 1.84 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 25 H 0.04 1.80 6.45 -2.38 -0.02 1.78 16 26 H 0.26 15.47 6.09 -92.71 -0.56 14.90 16 27 H 0.34 12.94 6.50 -89.69 -0.58 12.36 16 28 H 0.09 2.66 8.06 -2.38 -0.02 2.64 16 29 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 30 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.08 2.96 7.57 -2.38 -0.02 2.94 16 Total: -1.00 -61.07 263.11 1.22 -59.85 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.72 Total: 22.83 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 2.79 Total: -35.86 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.65 Total: -84.26 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.69 Total: -14.36 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -61.07 1.22 -59.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718066824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.529 kcal (2) G-P(sol) polarization free energy of solvation -61.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds