Wall clock time and date at job start Mon Mar 30 2020 03:04:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52990 * 109.47167 * 2 1
4 4 H 1.09008 * 109.47214 * 176.59795 * 3 2 1
5 5 C 1.50702 * 109.47450 * 56.60099 * 3 2 1
6 6 H 1.07993 * 120.00029 * 243.97790 * 5 3 2
7 7 C 1.37889 * 119.99876 * 63.97199 * 5 3 2
8 8 N 1.31512 * 119.99723 * 11.14751 * 7 5 3
9 9 Si 1.86792 * 119.99899 * 191.14224 * 7 5 3
10 10 H 1.48503 * 109.47084 * 179.97438 * 9 7 5
11 11 H 1.48504 * 109.47174 * 60.00252 * 9 7 5
12 12 H 1.48495 * 109.47585 * 300.00229 * 9 7 5
13 13 N 1.46893 * 109.47572 * 296.60023 * 3 2 1
14 14 C 1.46902 * 110.99990 * 277.35250 * 13 3 2
15 15 C 1.53005 * 119.80861 * 103.37762 * 14 13 3
16 16 C 1.53002 * 60.65384 * 112.31271 * 15 14 13
17 17 H 1.09002 * 120.24781 * 247.86625 * 16 15 14
18 18 C 1.54482 * 118.06917 * 90.40552 * 16 15 14
19 19 O 1.44424 * 104.80059 * 321.13216 * 18 16 15
20 20 C 1.44995 * 104.98290 * 319.03869 * 19 18 16
21 21 H 1.09001 * 109.46531 * 301.52787 * 1 2 3
22 22 H 1.08998 * 109.46979 * 61.52339 * 1 2 3
23 23 H 1.09001 * 109.46990 * 181.52517 * 1 2 3
24 24 H 1.08994 * 109.47026 * 239.99608 * 2 1 3
25 25 H 1.09007 * 109.46861 * 120.00283 * 2 1 3
26 26 H 0.97001 * 120.00284 * 359.07013 * 8 7 5
27 27 H 1.00902 * 110.99941 * 41.29967 * 13 3 2
28 28 H 1.09004 * 117.43050 * 219.98739 * 15 14 13
29 29 H 1.08999 * 117.43141 * 4.63747 * 15 14 13
30 30 H 1.08998 * 110.36758 * 79.95857 * 18 16 15
31 31 H 1.08998 * 110.37273 * 202.18851 * 18 16 15
32 32 H 1.08997 * 111.17938 * 282.18506 * 20 19 18
33 33 H 1.09004 * 109.83299 * 159.67592 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 3.1284 1.4430 0.0610
5 6 1.4702 2.1768 1.1862
6 1 0.8044 3.0134 1.0343
7 6 1.7987 1.7804 2.4653
8 7 2.7695 0.9140 2.6563
9 14 0.8650 2.4741 3.9269
10 1 1.4064 1.8926 5.1814
11 1 -0.5744 2.1301 3.8033
12 1 1.0201 3.9506 3.9579
13 7 1.6187 2.1108 -1.2383
14 6 2.5344 1.7977 -2.3434
15 6 2.1185 0.7849 -3.4122
16 6 2.2685 2.2589 -3.7940
17 1 1.3927 2.8470 -4.0680
18 6 3.6479 2.7438 -4.2925
19 8 4.6051 2.0446 -3.4675
20 6 4.0400 2.0718 -2.1325
21 1 -0.3632 0.5374 0.8760
22 1 -0.3633 0.4900 -0.9033
23 1 -0.3633 -1.0273 0.0274
24 1 1.8934 -0.5139 -0.8899
25 1 1.8934 -0.5139 0.8900
26 1 3.2455 0.5436 1.8966
27 1 0.6688 1.8669 -1.4757
28 1 2.8802 0.0930 -3.7718
29 1 1.1076 0.3813 -3.3552
30 1 3.7866 2.4802 -5.3410
31 1 3.7431 3.8212 -4.1570
32 1 4.1865 3.0443 -1.6626
33 1 4.4876 1.2849 -1.5253
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000718066824.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:31
Heat of formation + Delta-G solvation = -37.320747 kcal
Electronic energy + Delta-G solvation = -14695.799094 eV
Core-core repulsion = 12335.460635 eV
Total energy + Delta-G solvation = -2360.338458 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 211.131 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.43669 -38.18376 -35.64198 -33.64811 -31.64619 -29.14599 -27.47220 -26.81971
-25.48315 -21.97091 -21.60708 -20.52686 -18.72125 -17.83591 -16.95071 -16.19333
-16.01589 -15.63639 -15.35589 -15.05586 -14.61670 -14.05432 -13.80261 -13.64860
-13.14625 -12.82273 -12.60186 -12.40969 -12.34988 -12.07278 -11.93484 -11.72049
-11.57128 -11.09546 -10.90067 -10.48203 -10.23962 -8.92090 -8.52317 -6.19561
1.56133 1.62422 1.81476 2.50891 2.60469 2.80257 3.25116 3.28382
3.59302 3.64262 3.94335 4.18104 4.34136 4.35017 4.42495 4.53212
4.59776 4.64674 4.69079 4.77208 4.83014 4.93645 5.05109 5.16347
5.21252 5.38819 5.53109 5.62351 5.96844 6.20329 6.53940 6.68458
6.77682 7.55115 8.84777
Molecular weight = 211.13amu
Principal moments of inertia in cm(-1)
A = 0.044751 B = 0.008968 C = 0.008398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 625.528814 B = 3121.293933 C = 3333.173350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.141 4.141
3 C 0.211 3.789
4 H 0.001 0.999
5 C -0.582 4.582
6 H 0.045 0.955
7 C -0.025 4.025
8 N -0.936 5.936
9 Si 1.106 2.894
10 H -0.289 1.289
11 H -0.271 1.271
12 H -0.277 1.277
13 N -0.633 5.633
14 C -0.010 4.010
15 C -0.162 4.162
16 C -0.185 4.185
17 H 0.136 0.864
18 C 0.070 3.930
19 O -0.388 6.388
20 C 0.094 3.906
21 H 0.047 0.953
22 H 0.053 0.947
23 H 0.050 0.950
24 H 0.039 0.961
25 H 0.035 0.965
26 H 0.257 0.743
27 H 0.340 0.660
28 H 0.092 0.908
29 H 0.108 0.892
30 H 0.119 0.881
31 H 0.078 0.922
32 H 0.065 0.935
33 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.730 1.071 -11.648 12.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.181 4.181
3 C 0.103 3.897
4 H 0.019 0.981
5 C -0.620 4.620
6 H 0.063 0.937
7 C -0.224 4.224
8 N -0.574 5.574
9 Si 0.929 3.071
10 H -0.215 1.215
11 H -0.196 1.196
12 H -0.202 1.202
13 N -0.263 5.263
14 C -0.103 4.103
15 C -0.202 4.202
16 C -0.204 4.204
17 H 0.154 0.846
18 C -0.006 4.006
19 O -0.306 6.306
20 C 0.016 3.984
21 H 0.066 0.934
22 H 0.072 0.928
23 H 0.069 0.931
24 H 0.057 0.943
25 H 0.054 0.946
26 H 0.067 0.933
27 H 0.160 0.840
28 H 0.111 0.889
29 H 0.126 0.874
30 H 0.137 0.863
31 H 0.096 0.904
32 H 0.083 0.917
33 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -2.305 1.575 -9.888 10.274
hybrid contribution -0.114 -0.884 -1.515 1.758
sum -2.419 0.691 -11.403 11.677
Atomic orbital electron populations
1.21496 0.95014 1.00197 1.01391 1.22064 0.97549 0.99741 0.98776
1.19105 0.93800 0.89339 0.87466 0.98129 1.22043 1.30972 1.16841
0.92168 0.93654 1.26925 0.96253 0.96054 1.03137 1.70925 1.20664
1.31477 1.34340 0.83057 0.75374 0.75791 0.72835 1.21458 1.19591
1.20235 1.60366 1.04278 1.60381 1.01254 1.23297 0.93946 1.04608
0.88438 1.23428 1.02854 0.91950 1.01933 1.24324 1.00610 0.97842
0.97641 0.84634 1.23097 0.84434 0.96739 0.96333 1.89231 1.44535
1.77792 1.19068 1.22597 0.89847 1.01123 0.84805 0.93401 0.92781
0.93098 0.94270 0.94619 0.93260 0.84033 0.88935 0.87355 0.86343
0.90390 0.91653 0.90611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.84 9.39 71.98 0.68 -4.16 16
2 C -0.14 -6.32 5.47 30.59 0.17 -6.15 16
3 C 0.21 10.21 1.89 44.17 0.08 10.30 16
4 H 0.00 0.05 5.73 -2.38 -0.01 0.03 16
5 C -0.58 -31.48 7.32 25.60 0.19 -31.30 16
6 H 0.05 2.50 7.84 -2.91 -0.02 2.48 16
7 C -0.03 -1.39 5.19 84.66 0.44 -0.95 16
8 N -0.94 -55.69 13.02 21.45 0.28 -55.41 16
9 Si 1.11 49.75 29.92 68.60 2.05 51.80 16
10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16
11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16
12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
13 N -0.63 -25.92 6.55 -447.13 -2.93 -28.85 16
14 C -0.01 -0.34 2.75 4.55 0.01 -0.33 16
15 C -0.16 -4.67 9.51 30.60 0.29 -4.38 16
16 C -0.19 -5.00 7.25 -9.77 -0.07 -5.07 16
17 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16
18 C 0.07 1.76 7.52 72.49 0.55 2.30 16
19 O -0.39 -12.67 11.34 -148.98 -1.69 -14.36 16
20 C 0.09 3.43 6.37 72.48 0.46 3.89 16
21 H 0.05 2.09 7.06 -2.39 -0.02 2.07 16
22 H 0.05 1.86 6.45 -2.39 -0.02 1.84 16
23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
24 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16
25 H 0.04 1.80 6.45 -2.38 -0.02 1.78 16
26 H 0.26 15.47 6.09 -92.71 -0.56 14.90 16
27 H 0.34 12.94 6.50 -89.69 -0.58 12.36 16
28 H 0.09 2.66 8.06 -2.38 -0.02 2.64 16
29 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16
30 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16
31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
33 H 0.08 2.96 7.57 -2.38 -0.02 2.94 16
Total: -1.00 -61.07 263.11 1.22 -59.85
By element:
Atomic # 1 Polarization: 22.12 SS G_CDS: 0.72 Total: 22.83 kcal
Atomic # 6 Polarization: -38.65 SS G_CDS: 2.79 Total: -35.86 kcal
Atomic # 7 Polarization: -81.61 SS G_CDS: -2.65 Total: -84.26 kcal
Atomic # 8 Polarization: -12.67 SS G_CDS: -1.69 Total: -14.36 kcal
Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal
Total: -61.07 1.22 -59.85 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000718066824.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.529 kcal
(2) G-P(sol) polarization free energy of solvation -61.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.321 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds